BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G06450.1
Length=1380
Score E
Sequences producing significant alignments: (Bits) Value
Ahg919361 jgi|Araly1|919361|scaffold_100642.1 1714 0.0
> Ahg919361 jgi|Araly1|919361|scaffold_100642.1
Length=1109
Score = 1714 bits (928), Expect = 0.0
Identities = 1062/1124 (94%), Gaps = 20/1124 (2%)
Strand=Plus/Plus
Query 67 TCTGCAGAAATCATCATCATGAACGAGATTCATCAACCGCTGGCGAGGAGAGTATGGAGA 126
||||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 4 TCTGCAGAACTCATCATCATGAACGAGATTCATCAACCGATTGCGAGGAGAGTATGGAGA 63
Query 127 AGCAACGTCGATGAAGAGATGGCTCGTATGGCCGAATGTCTCAAGCGATTCCCACTCATC 186
||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 64 AGCAACGTCGATGAAGAGATGGCTCGTATGGAGGAATGTCTCAAGAGATTCCCACTCATC 123
Query 187 GCTTTCGATACAGAGTACCCTGGCATTATTTTCCGCACTTATTTCGATTCCTCTAGCGAC 246
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 124 GCTTTCGATACAGAGTACCCTGGCATTATTTTCCGTACTTATTTCGATTCCTCTAGCGAC 183
Query 247 GAATGTTACAGAGCCATGAAAGGTAATGTCGAGAACACCAAGCTGATCCAGTGTGGTTTC 306
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 184 GAATGTTACAGAGCCATGAAAGGTAATGTCGAAAACACCAAACTGATCCAGTGTGGTTTC 243
Query 307 ACTCTTTTCAACGCCAAGGGAGAGATCGGTGGTGTTTGGGAGATTAACTTCTCCAATTTC 366
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 244 ACTCTTTTCAACGCCAAGGGAGAGATCGGTGGCGTTTGGGAGATTAACTTCTCCAATTTC 303
Query 367 GGCGACCCATCAGACACACGCAACGAGCTTTCCATCGAATTCTTGAGGAGGCATGGTTTG 426
||||||||||||||||||||||||||| |||| |||||||| |||||||| |||||||||
Sbjct 304 GGCGACCCATCAGACACACGCAACGAGATTTCGATCGAATTTTTGAGGAGACATGGTTTG 363
Query 427 GATTTGCAGAAGATTAGAGACGAAGGAGTTGATATGTTCGGCTACGGGTTTTTCCCTAAG 486
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 364 GATTTGCAGAAGATTAGAGACGAAGGAGTTGATATGTTCGGCTACGGGTTTTTCCCAAAG 423
Query 487 CTTATGACTGTGTTTCGTTCTCAGAAACACGTTGAGTTCGTCAC-TTTCCAAGGAGCTTA 545
||||||||||||||||| |||||||||||||||||||||||||| |||| ||||||||||
Sbjct 424 CTTATGACTGTGTTTCGATCTCAGAAACACGTTGAGTTCGTCACCTTTC-AAGGAGCTTA 482
Query 546 CGATTTCGCTTACTTCTTGAGTATCCTCAATCA-TGGCAAGCTACCAGAGACTCACGGCG 604
||| |||||||||||||||||||||||||| || ||| |||||||||||||||||||| |
Sbjct 483 CGACTTCGCTTACTTCTTGAGTATCCTCAA-CAATGGGAAGCTACCAGAGACTCACGGAG 541
Query 605 AGTTTGCAACAGAGGTTGTCAAAGTGTTCGGTCAAGTTTACGACACCAAGGTCATGGCTG 664
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 542 AGTTTGCAACGGAGGTTGTCAAAGTGTTCGGTCAAGTTTATGACACCAAGGTCATGGCTG 601
Query 665 GATTCTGTGAAGGACTAGGTGAACACCTCGGGTTAAGCAAACTAGCCCAGCTACTTCAGA 724
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 602 GATTCTGTGAAGGCCTCGGTGAACACCTCGGGTTAAGCAAACTAGCCCAGCTACTTCAGA 661
Query 725 TCACTCGTGTGGGAAGAGCACATCACGCTGGTTCAGACAGCTTAATGACTGCACTTGTCT 784
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 662 TCACTCGGGTGGGAAGAGCACACCACGCTGGTTCAGACAGCTTAATGACTGCACTTGTCT 721
Query 785 TCATCAAGCTTAAACATGTCTATGAAGATTCCAGATTTGCTAGAGGATTGATCTATGGAA 844
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 722 TCATCAAGCTCAAACAAGTCTATGAAGATTCCAGATTTGCTAGAGGATTGATCTATGGAA 781
Query 845 TTGGGAAAAGCAACCTCGTTGCCGCCCCTGCCCCTGCGCCTGTGCCAGAGCCGACTCTTC 904
|||||||||| |||||||||||||||||||| || | || || || | |||
Sbjct 782 TTGGGAAAAGAAACCTCGTTGCCGCCCCTGC----GC-C-TG----AG--CC---TGTTC 826
Query 905 CTTTGATGTGCCAGCAGAATGTAGCTTCATATCCTGTGTTCCACAATGGATATGTCCAGA 964
|||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 827 CTTTGATGTGTCAGCAGAATGTAGCTTCATATCCTGTGTTCCATAATGGATATGTCCAAA 886
Query 965 ACTATGAGCAGCCTCAGCTTGTCTCCTACGATCCTTCAGGTGCCCCATGGGCGTTCTGTA 1024
||||||||||||||||||||||||||||| ||||||||| |||||| ||||||||||| |
Sbjct 887 ACTATGAGCAGCCTCAGCTTGTCTCCTACCATCCTTCAGCTGCCCCTTGGGCGTTCTGCA 946
Query 1025 ATGCTACCGGTACGTATGTGCAGCTTACTCATCTACCTGCAAGCACTTTTGCATACCCGT 1084
|||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct 947 ATGCTACCGGTACGTACGTGCAGCTTACTCATCTACCTGCAAACACTTTTGCATACCCGT 1006
Query 1085 CTCAGACGCCATCTGCTACTGTTGATTATCTTGGACCAGTTCCTAATTATTACAACAATA 1144
||||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||
Sbjct 1007 CTCAGACGCCATCTGCTGCAGTTGATTATCTTGGACCAGTTCCTAATTATTACAATAATA 1066
Query 1145 ATGCTTGCTACGTAGTTGAGTAGATTGAGATTTCCCCAGCTTTA 1188
|||||||||| ||||||||||||||||||||||||| |||||||
Sbjct 1067 ATGCTTGCTATGTAGTTGAGTAGATTGAGATTTCCC-AGCTTTA 1109
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51656552535
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5