BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G06460.1
Length=1226
Score E
Sequences producing significant alignments: (Bits) Value
Ahg910333 jgi|Araly1|910333|Al_scaffold_0001_587 1393 0.0
> Ahg910333 jgi|Araly1|910333|Al_scaffold_0001_587
Length=855
Score = 1393 bits (754), Expect = 0.0
Identities = 826/860 (96%), Gaps = 7/860 (1%)
Strand=Plus/Plus
Query 148 ATGGAGCATGAATCTATCACCGCTCGACGCAGGCTCGCTGCCTTCGCCGCTCACTTCCCG 207
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1 ATGGAGCATGAATCTATCACCGCTCGACGCAGGCTCGCTGCCGTCGCCGCTCACTTCCCG 60
Query 208 GCAACCAGTTACGATTCCGCCTCCACCGCATCTCTCGTCCCCTTGAACTGCAGCAGCAGT 267
|||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 61 CCAACCAGTTACGATCCCGCCTCCACCGCATCTCTCGTCCCCTTGAACTGTAGCAGCAGT 120
Query 268 TTGAACACTGTCATCCAAAGGTGTGACAACAAAATCTCTTTTGCCCGGCAAGCATCATCT 327
|||||| ||||||||| |||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 121 TTGAACTCTGTCATCCTAAGGTGTGACAACAAAATCTCTTTCGCCCGCCAAGCATCATCT 180
Query 328 GAACAGGGCTTT-TTTATGAGGCCAGCTTCACCCGATGATGTCCTTGAGAACTTAGGTAT 386
|||||||| ||| |||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct 181 GAACAGGG-TTTCTTTATGAGGCAAGCTTCACCCGATGATGTCCTTGAGAACTTAGGCAT 239
Query 387 GAATTTGAAGAACACTGTCGTTAGAAGGGGTGACAACAGGCTGTATTTTGCTCGGCAAGC 446
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 240 GAATTTGAAGAACTCTGTCATTAGAAGGGGTGACAACAGGCTGTATTTTGCTCGGCAAGC 299
Query 447 ATCTTCTGCACAAGGtttttttATGAGACAGGCTTCGACTAATGAGAGGACCATACCACA 506
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 300 ATCTTCTGCACAGGGTTTTTTTATGAGACAGGCTTCTACTAATGAGAGGACCATACCACA 359
Query 507 TGATGCTGCTGCATCTACCAAGTTTTCTGCTACCAAAACAACTGGCTTCGATTCTTCTTC 566
| | ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 360 -G--GATGCTGCATCTACCAAGTATTCTGCTACCAAAACAACTGGCTTCGATTCTTCTTC 416
Query 567 ACCTGCGTACGCTGCACCACACTTTTCTAAGCCTGCAAAAGAGGACATCTTTTTTCCTTC 626
||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 417 ACCTGCGTACGCTGCACCACACTTTTCTAAGCCTGCAAAAGAGGATTTCGTTTTTCCTTC 476
Query 627 TTTATCACCAAATCTGCAAAAGGAAAGGCCTAAGCTTGATCTTCCTAAGTTAGCCAATTT 686
| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 TGTATCACCAAATCTGCGAAAGGAAAGGCCTAAGCTTGATCTTCCTAAGTTAGCCAATTT 536
Query 687 AGGTACTGTTTGGTCTCCCAGATCGAATGTTGCTGAAT-CGACACACAGCTATGTTGTGG 745
|||||||||||||||||| ||||||||||||||||||| ||| |||||||||||||||||
Sbjct 537 AGGTACTGTTTGGTCTCCGAGATCGAATGTTGCTGAATCCGA-ACACAGCTATGTTGTGG 595
Query 746 CAATAGAGCTACCAGGAGCCAGTATCAATGATATAAGAGTGGAGGTTGACAACACAAACT 805
|||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |||||
Sbjct 596 CAATAGAGCTACCAGGGGCCAGTATCAATGATATAAGAGTGGAGGTCGACAACATAAACT 655
Query 806 TGACTGTGACAGGTAGACGCACATCTATCTGTCAAAAAGTTGATGCAGGCACCAAAGCTT 865
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 656 TGACTGTGACAGGTAGACGCACATCTATCTGTCAAAAAGTTGATGCAGGCACCAAAGCTT 715
Query 866 CGATCCTTGGATATCATAAGCAAGAAATACTACAAGGACCATTCAAAGTTTCCTGGCCAC 925
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 716 CAATCCTTGGATATCATAAGCAAGAAATACTACAAGGACCATTCAAAGTTTCCTGGCCAC 775
Query 926 TCCCCAGCAATGTGAACAAGGATAATGTTTCCGCTGAATTTATGGATGGGATTCTGAGAA 985
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 776 TCCCCAGCAATGTGAACAAGGATAATGTTTCCGCTGAATTTATGGATGGGATTCTGAGAA 835
Query 986 TAGTAATTCCAAAGCTTTGA 1005
|||| |||||||||||||||
Sbjct 836 TAGTTATTCCAAAGCTTTGA 855
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45785623317
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5