BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G06470.1
Length=1834
Score E
Sequences producing significant alignments: (Bits) Value
Ahg919363 jgi|Araly1|919363|scaffold_100644.1 2159 0.0
> Ahg919363 jgi|Araly1|919363|scaffold_100644.1
Length=1286
Score = 2159 bits (1169), Expect = 0.0
Identities = 1242/1278 (97%), Gaps = 2/1278 (0%)
Strand=Plus/Plus
Query 343 CTGGTGAGTTCAGATTATTGATGGAGCAAAGAGTGCAGCTCCGTGTTGGTACAATGGAAA 402
||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct 1 CTGGTGAGTTCAGATTATTGATGGAGCAAAGAGTGCAGCTCCGTGGTGGTACAATAGAAG 60
Query 403 CCATATCCAATGAGGGAGATGTAGATAGAGAACAGGTTTTAGAGACTTTTGGTATTGAAA 462
| ||||||||| ||| ||||||||| |||||||||||||||||| | |||| ||||||||
Sbjct 61 CTATATCCAATCAGGTAGATGTAGACAGAGAACAGGTTTTAGAGCCGTTTGATATTGAAA 120
Query 463 ATGAGACCGGGAAGGAGACAAACGGCTCCAGAAGTTTTGATGTTGGTTACAGTTCCGGTG 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 ATGAGACCGGGAAGGAGACAAACGGCTCCAGAAGTTTTGATGTTGGTTACAGTTCCGGTG 180
Query 523 ATACCCTTGAAACATTGCCTAAAGCGTCAAAAGTAGATATCTCTCCTGCTGACGTGCTTA 582
||| ||| |||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 181 ATAACCTCGAAACATTGCCTAAAGCGTCAAAAACGGATATCTCTCCTGCTGACGTGCTTA 240
Query 583 AAACACTCTTCTTTATACTTGTATGGTACACTTTCAGCACATTTCTGACTCTGTACAACA 642
||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 241 AAACACTGTTCTTTATACTTGTATGGTACACTTTCAGCACATTTTTGACTCTGTACAACA 300
Query 643 AAACTCTCTTAGGAGATGATTTAGGGAAATTTCCTGCTCCCTTATTAATGAATACCATTC 702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AAACTCTCTTAGGAGATGATTTAGGGAAATTTCCTGCTCCCTTATTAATGAATACCATTC 360
Query 703 ACTTTTCTATTCAAGCTGTTTTATCAAAGATGATAACATGGTATTGGTCGGGGAGATTTC 762
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 ACTTTTCTATTCAAGCTGTTTTATCAAAGATGATAACATGGTATTGGTCGGGGAGATTTC 420
Query 763 AGCCTGATGTTACCATATCATGGAGAGACTATTTCGTTAGAGTTGTACCAACAGCGCTTG 822
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 AACCTGATGTTACCATATCATGGAGAGACTATTTCGTTAGAGTTGTACCAACAGCGCTTG 480
Query 823 GAACTGCTATGGATATAAACCTAAGTAACGAGTCACTTGTCTTCATATCGGTTACATTTG 882
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 481 GAACTGCTATGGATATAAACCTAAGTAATGAGTCACTTGTCTTCATATCGGTTACATTTG 540
Query 883 CAACAATGTGCAAATCTGCAGCCCCAATATTTCTTCTTCTGTTTGCTTTTGCCTTCAGGC 942
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 CAACAATGTGCAAATCTGCAGCCCCAATATTTCTTCTTCTGTTTGCTTTTGCCTTCAGGC 600
Query 943 TGGAGTCTCCAAGCCTGAAACTTTTTGGCATTATTTCAGTGATCTCAGCAGGAGTGTTGT 1002
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TGGAGTCTCCAAGCCTGAAACTTTTTGGCATTATTTCAGTGATCTCAGCAGGAGTGTTGT 660
Query 1003 TAACAGTTGCAAAGGAGACAGAATTTGAGTTTTGGGGTTTCGTTTTTGTCATGCTTGCTG 1062
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 TAACAGTTGCAAAGGAGACAGAATTTGAGTTTTGGGGTTTCGTTTTTGTCATGCTTGCTG 720
Query 1063 CTGTCATGTCTGGTTTCCGCTGGTGTATGACGCAAGTTCTTTTGCAGAAAGAAACATTTG 1122
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 721 CTGTCATGTCTGGTTTCCGCTGGTGTATGACACAAGTTCTTTTGCAGAAAGAAACCTTTG 780
Query 1123 GACTGAAAAATCCATTCATATTCATGAGCTGTGTGGCACCAGTGATGGCTATAGCGACTG 1182
| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 781 GCCTGAAAAATCCATTCATATTCATGAGCTGTGTGGCACCAGTGATGGCGATAGTGACTG 840
Query 1183 GTCTTCTTTCTCTCCTTCTGGATCCATGGAGTGAATTTAGAGACAACAAATACTTTGATA 1242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 GTCTTCTTTCTCTCCTTCTGGATCCATGGAGTGAATTTAGAGACAACAAATACTTTGATA 900
Query 1243 GTGGAGCACAttttgctcgaacttgttttttgatgctttttggcggagcactggcttttt 1302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 GTGGAGCACATTTTGCTCGAACTTGTTTTTTGATGCTTTTTGGCGGAGCACTGGCTTTTT 960
Query 1303 gtatggttttgACAGAGTATGTCCTTGTTTCCGTAACTAGTGCTGTAACCGTCACAATAG 1362
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 961 GTATGGTTTTGACAGAGTATGTCCTTGTTTCCGTAACCAGTGCTGTAACCGTCACAATAG 1020
Query 1363 CGGGAGTTGTCAAAGAGGCTGTCACCATAGTGGTTGCAGTGTTTTACTTCCATGACGAAT 1422
|||| ||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 1021 CGGGCGTTGTTAAAGAGGCTGTCACCATAGTGGTTGCAGTATTTTACTTCCACGACGAAT 1080
Query 1423 TTACGTGGCTGAAAGGTGTGGGTCTGATGATCATTATGGTTGGTGTCAGTTTGTTCAACT 1482
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1081 TTACGTGGCTGAAAGGTGTGGGTCTGATGATTATTATGGTTGGTGTCAGTTTGTTCAACT 1140
Query 1483 GGTACAAATATGATAAACTACAAAAGGGGCACAAAACAGAGGAAGAGAAGCAGTTACAAG 1542
|||||||||||||||||||||||||||| |||||||||||||| |||| |||||||||||
Sbjct 1141 GGTACAAATATGATAAACTACAAAAGGGTCACAAAACAGAGGATGAGACGCAGTTACAAG 1200
Query 1543 CTCCAAGTCAGACTGGAAAATATGTGATTCTTGATGAGATGGATGATCAAGAAAATAGTC 1602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1201 CTCCAAGTCAGACTGGAAAATATGTGATTCTTGATGAGATGGATGATCAAGAAAATAGTC 1260
Query 1603 CCTAAGAATT--ATTTTT 1618
|||||| ||| ||||||
Sbjct 1261 CCTAAGGATTTTATTTTT 1278
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68867162960
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5