BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G06475.1

Length=553
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg470668 jgi|Araly1|470668|fgenesh2_kg.1__622__AT1G06475.1          399    8e-111


> Ahg470668 jgi|Araly1|470668|fgenesh2_kg.1__622__AT1G06475.1
Length=405

 Score =  399 bits (216),  Expect = 8e-111
 Identities = 344/400 (86%), Gaps = 32/400 (8%)
 Strand=Plus/Plus

Query  50   AGTATAAGAATGCTGCACCGTGACATGAC----TC--TGTA-GTag-agagagagagaga  101
            |||||||||||||||||||| ||||||||    ||  |||| |||| |||||||||||||
Sbjct  28   AGTATAAGAATGCTGCACCGCGACATGACTATGTCTATGTATGTAGTAGAGAGAGAGAGA  87

Query  102  gagagGTAGACAATGGGAGTTATGAAGAAGTGGGCGTCGCTGAAGAAGAAGAAGCTGCAA  161
            | || ||||| |||| |||| |||| ||||||||||||| ||||||||||||||| ||||
Sbjct  88   GGGACGTAGAGAATGAGAGTGATGATGAAGTGGGCGTCGTTGAAGAAGAAGAAGCAGCAA  147

Query  162  CAAGAGGAGGAACAAGTGACGGCTAAAGAAACACAGACATGGCAGCGATTAAGGAATCTG  221
            |||||||| | ||  | | |  | |||||||| || ||||||||||||||||||||| | 
Sbjct  148  CAAGAGGA-G-AC--G-G-C--C-AAAGAAACGCAAACATGGCAGCGATTAAGGAAT-T-  196

Query  222  TTTTCAACGTCGTCTTCGTCTTCGTCTTCGTCGGCGAAGTGGAAGCGAGTTGAGATAATA  281
            | ||     |  ||| ||   ||||||||||||||||||||||||||||| |||||||||
Sbjct  197  TGTT-----T--TCTACG---TCGTCTTCGTCGGCGAAGTGGAAGCGAGTGGAGATAATA  246

Query  282  ATGCTGACAGAGATAGTAGACGGAGTAGTTTACAAGGTCATGTATGTAGTTGAAGCT-TT  340
            ||| ||||||||||||||||||||||||||||||| |||||||||||||| |||||| ||
Sbjct  247  ATGGTGACAGAGATAGTAGACGGAGTAGTTTACAAAGTCATGTATGTAGTCGAAGCTCTT  306

Query  341  CGTTCTCGTTTCCACGCTCTGCTTCTTCTACCTCTGTTGTGGATGCCACATTTGATCCAA  400
             ||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||  
Sbjct  307  -GTTCTCGTTTCGACGCTCTGCTTCTTCTACCTTTGTTGTGGATGCCACATCTGATCCTT  365

Query  401  -TTTTTGTTTCTCTCATTATATTATTCTTTCCAATTCATA  439
             ||||| ||||| |||||||||||||||||||||||||||
Sbjct  366  CTTTTTATTTCTTTCATTATATTATTCTTTCCAATTCATA  405



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20184306581


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5