BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G06500.1 Length=680 Score E Sequences producing significant alignments: (Bits) Value Ahg919366 jgi|Araly1|919366|scaffold_100647.1 549 9e-156 > Ahg919366 jgi|Araly1|919366|scaffold_100647.1 Length=460 Score = 549 bits (297), Expect = 9e-156 Identities = 394/437 (90%), Gaps = 21/437 (5%) Strand=Plus/Plus Query 123 ACGATGATGCATTCGACGGTGCAGCATGG-GGGAAACAAGAGTGGCAAGTCAAATGTATG 181 ||||||||||||||||||||||||||||| ||| ||||||||||||||||| |||||||| Sbjct 18 ACGATGATGCATTCGACGGTGCAGCATGGTGGG-AACAAGAGTGGCAAGTCCAATGTATG 76 Query 182 GGCTAATACTAACTTGGCAAAGACAGTGGCAGCTGTAGATGAGTTCAAATTTGGATTCCC 241 |||||| ||||| ||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 77 GGCTAACACTAATTTGGCAAAGACAGTGGCAGCTTTAGATGAGTTCAAATTTGGATTCCC 136 Query 242 ATCAGGCGGGTTAACAACTGTGTCAAACAAATGGTGGGGAAGGGCAGAGAAAGGCGGACG 301 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 137 ATCAGGCGGGTTAACAACTGTGTCAAACAAATGGTGGGGAAGGCCAGAGAAAGGCGGACG 196 Query 302 -AGAAGATGGTGGAGGAGAGAACACTGAA-A---A--TGGACATGT-A-G--C-A-GCTT 348 | ||||||||||||||||||| |||||| | | |||| |||| | | | | || Sbjct 197 CA-AAGATGGTGGAGGAGAGAATACTGAAGATGGAGATGGAGATGTCAAGGACGAAGCA- 254 Query 349 G-TGATGAGACGCAAAATTCTTTGGTAGCTATTAGGAAAAGAATAGCGGAAGAAGGAAGA 407 | | | | || ||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 255 GCTTCTCATACACAAAATTCTTTGGTAGCTATTAGGAAAAGAATAGCGGAACAAGGAAGA 314 Query 408 GAAGCGGTTGAACTTGGTCTGCATCAAGGATTTGGTTCAAAAAGACCAGGCAAGAGAGAT 467 ||||| ||||||||||||||||||| ||||||| ||||||||||||||| |||||||||| Sbjct 315 GAAGCTGTTGAACTTGGTCTGCATCGAGGATTTTGTTCAAAAAGACCAGACAAGAGAGAT 374 Query 468 CAAGCTTTGCTGTTTCAGATCTTCAACTCTGCAATGCCAAAGGATTGGGTTACCCCTGAT 527 |||||||| |||||||||||||||||||||||| ||||||||||||||||||| |||| Sbjct 375 CAAGCTTTACTGTTTCAGATCTTCAACTCTGCACTGCCAAAGGATTGGGTTAC---TGAT 431 Query 528 TCTTCCTAAGTTCGTTT 544 ||||| ||| ||||||| Sbjct 432 TCTTCTTAAATTCGTTT 448 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 24970510635 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5