BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G06500.1

Length=680
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg919366 jgi|Araly1|919366|scaffold_100647.1                        549    9e-156


> Ahg919366 jgi|Araly1|919366|scaffold_100647.1
Length=460

 Score =  549 bits (297),  Expect = 9e-156
 Identities = 394/437 (90%), Gaps = 21/437 (5%)
 Strand=Plus/Plus

Query  123  ACGATGATGCATTCGACGGTGCAGCATGG-GGGAAACAAGAGTGGCAAGTCAAATGTATG  181
            ||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||
Sbjct  18   ACGATGATGCATTCGACGGTGCAGCATGGTGGG-AACAAGAGTGGCAAGTCCAATGTATG  76

Query  182  GGCTAATACTAACTTGGCAAAGACAGTGGCAGCTGTAGATGAGTTCAAATTTGGATTCCC  241
            |||||| ||||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct  77   GGCTAACACTAATTTGGCAAAGACAGTGGCAGCTTTAGATGAGTTCAAATTTGGATTCCC  136

Query  242  ATCAGGCGGGTTAACAACTGTGTCAAACAAATGGTGGGGAAGGGCAGAGAAAGGCGGACG  301
            ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct  137  ATCAGGCGGGTTAACAACTGTGTCAAACAAATGGTGGGGAAGGCCAGAGAAAGGCGGACG  196

Query  302  -AGAAGATGGTGGAGGAGAGAACACTGAA-A---A--TGGACATGT-A-G--C-A-GCTT  348
             | ||||||||||||||||||| |||||| |   |  |||| |||| | |  | | ||  
Sbjct  197  CA-AAGATGGTGGAGGAGAGAATACTGAAGATGGAGATGGAGATGTCAAGGACGAAGCA-  254

Query  349  G-TGATGAGACGCAAAATTCTTTGGTAGCTATTAGGAAAAGAATAGCGGAAGAAGGAAGA  407
            | |  | | || ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct  255  GCTTCTCATACACAAAATTCTTTGGTAGCTATTAGGAAAAGAATAGCGGAACAAGGAAGA  314

Query  408  GAAGCGGTTGAACTTGGTCTGCATCAAGGATTTGGTTCAAAAAGACCAGGCAAGAGAGAT  467
            ||||| ||||||||||||||||||| ||||||| ||||||||||||||| ||||||||||
Sbjct  315  GAAGCTGTTGAACTTGGTCTGCATCGAGGATTTTGTTCAAAAAGACCAGACAAGAGAGAT  374

Query  468  CAAGCTTTGCTGTTTCAGATCTTCAACTCTGCAATGCCAAAGGATTGGGTTACCCCTGAT  527
            |||||||| |||||||||||||||||||||||| |||||||||||||||||||   ||||
Sbjct  375  CAAGCTTTACTGTTTCAGATCTTCAACTCTGCACTGCCAAAGGATTGGGTTAC---TGAT  431

Query  528  TCTTCCTAAGTTCGTTT  544
            ||||| ||| |||||||
Sbjct  432  TCTTCTTAAATTCGTTT  448



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24970510635


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5