BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G06515.1

Length=633
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg910338 jgi|Araly1|910338|Al_scaffold_0001_592                     300    9e-81
  Ahg320841 jgi|Araly1|320841|fgenesh1_pm.C_scaffold_4000898           167    1e-40


> Ahg910338 jgi|Araly1|910338|Al_scaffold_0001_592
Length=171

 Score =  300 bits (162),  Expect = 9e-81
 Identities = 168/171 (98%), Gaps = 0/171 (0%)
 Strand=Plus/Plus

Query  148  ATGAACTGGGTTCAACGCAAAATCTACCTTTATAATGTCACATTCGGGCTCTACATGCTT  207
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGAACTGGGTTCAACGCAAAATCTACCTTTATAATGTCACATTCGGGCTCTACATGCTT  60

Query  208  GATTGGTGGGAACGATACCTCTTCAATTCTTTGGTGGTTGTTTTGATGTGGTTCGTTTTA  267
            ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| ||
Sbjct  61   GATTGGTGGGAACGATATCTCTTCAATTCTTTGGTGGTGGTTTTGATGTGGTTCGTTATA  120

Query  268  TACAACGGTACTCGCTACTTTTCGGAGCTTTTCCAGAGGCATTTGACATGA  318
            |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  TACAACGGTACTCGCTACTTTTCGGAGCTTTTCCAGAGGCATTTGACATGA  171


> Ahg320841 jgi|Araly1|320841|fgenesh1_pm.C_scaffold_4000898
Length=162

 Score =  167 bits (90),  Expect = 1e-40
 Identities = 137/160 (86%), Gaps = 2/160 (1%)
 Strand=Plus/Plus

Query  148  ATGAACTGGGTTCAACGCAAAATCTACCTTTATAATGTCACATTCGGGCTCTACATGCTT  207
            ||||||||||||||||| |||||||| ||||| || ||||| |||||||| |||||||||
Sbjct  1    ATGAACTGGGTTCAACGAAAAATCTATCTTTACAACGTCACCTTCGGGCTTTACATGCTT  60

Query  208  GATTGGTGGGAACGATACCTCTTCAATTCTTTGGTGGTTGTTTTGATGTGGTTCGTTTTA  267
            |||||||||||||||||||| ||||||||||||||| |  | |||||||||||  || | 
Sbjct  61   GATTGGTGGGAACGATACCTATTCAATTCTTTGGTGATAATCTTGATGTGGTTTATTCTG  120

Query  268  TACAACGG-TACTCGCTACTTTTCGGAGCTTTTCCAGAGG  306
            ||||| || | ||||||| ||||| ||||| | | |||||
Sbjct  121  TACAATGGAT-CTCGCTATTTTTCAGAGCTCTGCAAGAGG  159



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23178733536


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5