BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G06520.1
Length=1995
Score E
Sequences producing significant alignments: (Bits) Value
Ahg919369 jgi|Araly1|919369|scaffold_100650.1 3072 0.0
> Ahg919369 jgi|Araly1|919369|scaffold_100650.1
Length=1962
Score = 3072 bits (1663), Expect = 0.0
Identities = 1867/1967 (95%), Gaps = 8/1967 (0%)
Strand=Plus/Plus
Query 26 tctctctctACGCCATAGCTATGGTTTTACCAGAGCTTCTCGTGATTCTAGCAGAATGGG 85
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1 TCTCTCTCTAAGCCATAGCTATGGTTTTACCAGAGCTTCTAGTGATTCTAGCAGAATGGG 60
Query 86 TTCTTTACCGTCTTCTTGCTAAATCATGTTACAGAGCTGCTAGAAAGCTCAGAGGCTATG 145
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 61 TTCTTTACCGTCTTCTTGCTAATTCATGTTACAGAGCTGCTAGAAAGCTTAGAGGCTATG 120
Query 146 GTTTCCAGTTAAAAAATCTCCTAAGCCTCTCCAAAACACAATCTCTACACAACAATTCTC 205
||||||| || |||||||||||||||||||| ||| ||||||||| ||||||||| ||||
Sbjct 121 GTTTCCAATTGAAAAATCTCCTAAGCCTCTCTAAAGCACAATCTCAACACAACAACTCTC 180
Query 206 AGCATCATCTTCA-TAACCATCATCAACAAAATCACCCTAACCAAACCCTTCAAGATTCT 264
| ||||| | || || || || ||||||||||| | ||||| | ||||||||||||
Sbjct 181 ATCATCAACACCAGCAA-CAACAACAACAAAATCAGCAAAACCAGTCTCTTCAAGATTCT 239
Query 265 CTAGACCCTCTGTTCCCAAGCCTTACAAAATACCAAGAACTTCTTCTAGACAAAAACAGA 324
||| ||||| | ||||||||| ||||||| ||||||||| ||| ||||||||||||||
Sbjct 240 CTAAACCCTATCTTCCCAAGCATTACAAAGTACCAAGAA---CTTGTAGACAAAAACAGA 296
Query 325 GCATGCTCTGTTTCGTCTGATCATTATCGTGATACCTTTTTCTGCGATATCGATGGTGTT 384
|||||||||||||||||||||||| ||| |||||||||| ||||||| |||||||||||
Sbjct 297 GCATGCTCTGTTTCGTCTGATCATCATCTTGATACCTTTGTCTGCGACGTCGATGGTGTT 356
Query 385 TTATTAAGACAACATTCGAGCAAACACTTCCACACGTTCTTCCCTTACTTCATGCTCGTG 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 TTATTAAGACAACATTCGAGCAAACACTTCCACACGTTCTTCCCTTACTTCATGCTCGTG 416
Query 445 GCTTTTGAAGGAGGATCGATCATCAGAGCGATCCTTCTCTTGCTCTCCTGTTCTTTCCTT 504
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 417 GCTTTTGAAGGAGGATCGATCATCAGAGCGATCCTTCTCTTGCTCTCTTGTTCTTTCCTC 476
Query 505 TGGACTCTGCAACAAGAAACCAAACTCAGAGTTCTCTCTTTCATAACCTTCTCTGGTCTT 564
|||||||||||||||||||||||||||| ||| |||||||| || |||||||||||||||
Sbjct 477 TGGACTCTGCAACAAGAAACCAAACTCAAAGTCCTCTCTTTTATTACCTTCTCTGGTCTT 536
Query 565 AGAGTCAAAGACATGGACAATGTTTCTAGATCGGTTCTACCAAAATTCTTCCTCGAGAAC 624
| ||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 537 AAAGTCAAAGATATGGACAACGTTTCTAGATCGGTTCTACCCAAATTCTTCCTCGAGAAC 596
Query 625 TTGAATATCCAAGTTTACGACATCTGGGCTCGAACTGAGTACTCCAAAGTTGTGTTCACG 684
|||||| | || || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 TTGAATCTTCAGGTGTACGACATCTGGGCTCGAACTGAGTACTCCAAAGTTGTGTTCACG 656
Query 685 AGCTTGCCGCAAGTGCTGGTGGAGAGGTTCCTCAGAGAACATCTCAACGCTGATGATGTG 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 AGCTTGCCGCAAGTGCTGGTGGAGAGGTTCCTCAGAGAACATCTCAACGCTGATGATGTG 716
Query 745 ATTGGGACTAAACTGCAAGAAATAAAAGTCATGGGAAGGA-AATTCTACACAGGCCTAGC 803
|||||||||||||||||||||||| |||||||||| |||| || ||||||||||||||||
Sbjct 717 ATTGGGACTAAACTGCAAGAAATAGAAGTCATGGGGAGGAGAA-TCTACACAGGCCTAGC 775
Query 804 TTCTGGTTCTGGTTTCGTCCTGAAACATAAATCAGCTGAAGACTACTTTTTTGATAGCAA 863
||||||||||||||||||| |||||||||||||||||||||||||||| | |||| |||
Sbjct 776 TTCTGGTTCTGGTTTCGTCGTGAAACATAAATCAGCTGAAGACTACTTCCTCGATAACAA 835
Query 864 GAAGAAGCCTGCACTTGGAATTGGAAGCTCTTCAAGCCCACAAGATCACATCTTCATCTC 923
|||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 836 GAAGAAGCCTGCTCTTGGAATTGGATGCTCTTCAAGCCCACAAGATCACATCTTCATCTC 895
Query 924 CATTTGCAAAGAAGCTTATTTTTGGAATGAAGAAGAGTCCATGAGCAAGAACAACGCATT 983
||||||||||||||||||| |||||||||||||||||||||||| | |||||||| || |
Sbjct 896 CATTTGCAAAGAAGCTTATCTTTGGAATGAAGAAGAGTCCATGAACGAGAACAACACACT 955
Query 984 GCCTAGAGAAAGATACCCAAAGCCACTGATATTCCACGACGGGAGATTGGCTTTCTTGCC 1043
||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 956 GCCTAGAGAAAGATACCCAAAGCCATTGATATTCCACGACGGGAGGTTGGCTTTCTTGCC 1015
Query 1044 AACACCATTAGCTACATTAGCCATGTTCATATGGCTCCCTATCGGATTTTTACTCGCTGT 1103
||||||||||||||||||||| |||||||||||||||||||||||||| || ||||||||
Sbjct 1016 AACACCATTAGCTACATTAGCTATGTTCATATGGCTCCCTATCGGATTCTTCCTCGCTGT 1075
Query 1104 CTTCAGGATCTCGGTAGGAGTCTTTCTTCCTTACCATGTAGCCAATTTCTTGGCTTCTAT 1163
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1076 CTTCAGGATCTCGGTAGGAGTCTTGCTTCCTTACCATGTAGCCAATTTCTTGGCTTCTAT 1135
Query 1164 GTCCGGTGTTAGGATCACTTTCAAGACCCATAATTTGAATAACGGTCGTCCAGAGAAAGG 1223
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1136 GTCCGGTGTTAGGATCACTTTCAAGACTCATAATTTGAATAACGGTCGTCCAGAGAAAGG 1195
Query 1224 TAATAGTGGAGTCTTGTATGTATGCAACCATAGGACCCTCCTCGACCCAGTTTTCCTCAC 1283
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1196 TAAAAGTGGAGTCTTGTATGTATGCAACCATAGGACCCTCCTTGACCCAGTTTTCCTCAC 1255
Query 1284 CACTTCGCTGGGCAAGCCCTTGACCGCGGTTACTTACAGCCTAAGCAAGTTCTCCGAGTT 1343
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1256 CACTTCGCTTGGCAAGCCCTTGACCGCGGTTACTTACAGCCTAAGCAAGTTCTCCGAGCT 1315
Query 1344 CATAGCACCTCTCAAGACGGTTAGCCTTAAAAGAGATAGGAAGAAAGACGGTGAGGCAAT 1403
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1316 CATAGCACCTCTCAAGACGGTTAGCCTTAAAAGAGATAGGAAGAAAGACGGCGAGGCAAT 1375
Query 1404 GCAGAGACTATTAAGCAAAGGAGATCTAGTGGTTTGTCCGGAGGGAACCACATGTAGAGA 1463
|||||| ||||||||||||||||||||||||||||||| || |||||||| ||||||||
Sbjct 1376 GCAGAGGTTATTAAGCAAAGGAGATCTAGTGGTTTGTCCCGAAGGAACCACTTGTAGAGA 1435
Query 1464 GCCTTATCTACTAAGGTTCAGTCCTTTGTTCGCTGAGTTAACTGAAGACATTGTTCCCGT 1523
||||||||||||||| ||||||||| |||||||||||||||| |||||||||||||||||
Sbjct 1436 GCCTTATCTACTAAGATTCAGTCCTCTGTTCGCTGAGTTAACAGAAGACATTGTTCCCGT 1495
Query 1524 GGCTGTAGATGCTCGAGTGAGCATGTTCTATGGGACAACTGCGAGCGGGCTCAAGTGTTT 1583
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1496 GGCTGTGGATGCTCGAGTGAGCATGTTCTATGGGACAACCGCGAGCGGGCTCAAGTGTTT 1555
Query 1584 AGACCCTATCTTCTTCCTCATGAACCCTAGGCCGGTTTATTGTCTTGAGATTTTAAAGAA 1643
||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |
Sbjct 1556 AGACCCTATCTTCTTCCTCATGAACCCTAGGCCGGTTTATTGTCTTGAGGTTTTGAAGCA 1615
Query 1644 GTTGCCAAAAGAGATGACTTGTGCAGGAGGCAAGTCAAGCTTTGAAGTTGCGAATTTCAT 1703
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1616 GTTGCCAAAGGAGATGACTTGTGCAGGAGGCAAGTCAAGCTTTGAAGTTGCGAATTTCAT 1675
Query 1704 ACAGGGAGAACTTGCTAGGGTTTTGGGATTTGAATGCACTAATCTCACAAGGAGGGATAA 1763
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1676 ACAGGGAGAACTTGCTAGGGTTTTGGGATTTGAATGCACTAATCTCACAAGGAGGGATAA 1735
Query 1764 GTACTTGGTTCTTGCTGGAAATGAAGGCATTGTCAGATAAACTATTCCGAATTTTCATTA 1823
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 1736 GTACTTGGTTCTTGCTGGAAATGAAGGCATTGTCAGATAAAATAATCCGAATTTTCATTA 1795
Query 1824 Gtttt-tttGTTTGTTTGAAAAGCTAAATATTATTGTTATTTCAGGACTTAGATGTTTAA 1882
||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1796 GTTTTGTTTGTTTGTTTGAAAAGCAAAATATTATTGTTATTTCAGGACTTAGATGTTTAA 1855
Query 1883 TTCTATATGGTTGATTCATTGGCATCATTTCTATTTCTTATCACTCGGGACCATTGATAT 1942
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1856 TTCTATATGGTTGATTCATTGGCATCATTTCTATTTCTTATCACTCGGGACCATTGATAT 1915
Query 1943 GTATTGAAAATGTTTGCTTTATATGATTTTGTTTCTGGATTTGTATA 1989
|||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1916 GTATTGGAAATGTTTGCTTTATATGATTTTGTTTCTGGATTTGTATA 1962
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74999692405
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5