BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G06540.1

Length=409
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg910342 jgi|Araly1|910342|Al_scaffold_0001_596                     560    2e-159


> Ahg910342 jgi|Araly1|910342|Al_scaffold_0001_596
Length=387

 Score =  560 bits (303),  Expect = 2e-159
 Identities = 349/371 (94%), Gaps = 3/371 (1%)
 Strand=Plus/Plus

Query  1    ATGGCAGACTCCCTTTTGCAAAAGGCCACCTCTGCTCTTGGTGAAGCGAAACAAACTGTT  60
            ||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||| |||
Sbjct  1    ATGGCCGACTCCCTTTTGCAAAAGGCCACCTCTGCCCTTGGTGAAGCCAAACAAACCGTT  60

Query  61   ATGGCCTCTGCTGAAACCGCCAAGACCAATGTCGTCAAGGATGCAGTTGACAATGTGGTG  120
            || ||||||||||||| |||||||||| |||||||  |||||||||||||||||||||||
Sbjct  61   ATCGCCTCTGCTGAAAACGCCAAGACCGATGTCGTGGAGGATGCAGTTGACAATGTGGTG  120

Query  121  TCAAGAGGCATAGATGGAGCCAAAACCCTGTTGCACGGATTAGAGGAGAAGAAAGATGAA  180
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct  121  TCAAGAGGCATAGATGGAGCCAAAACCCTGTTGCACGGATTGGAGGAGAAGAAAGGTGAA  180

Query  181  GTCTCTTCCAAAATCATGGGAGCTGTTACACACTTTACTGGTAGCGCTGACTCAGCAGCC  240
            ||||| ||||||||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct  181  GTCTCCTCCAAAATCTTGGGAGCTGTTACACACTTTACCGGTAGCGCTGACTCAGCAGCC  240

Query  241  ACAACCGCAAACCGTGACTTACCCGTATCCACTGACAATCAGCCACTCCTAGCAGCAGGT  300
            |||||||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||
Sbjct  241  ACAACCGCAAACCGTGACTTACCCGTATCCACAGACGATCAGCCACTCCTAGCGGCAGGT  300

Query  301  ---CGTGAGGTCGAGACGCCATGGTGGAAGAACTGTTGTGGAATTCTTGATCTTCTCAAG  357
               |||||||||||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct  301  GATCGTGAGGTCGAGACACCATGGTGGAAGAACTGTTGTGGAGTTCTTGATCTTCTCAAG  360

Query  358  GCATCATCATC  368
            |||||||||||
Sbjct  361  GCATCATCATC  371



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14689901765


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5