BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G06550.1
Length=1562
Score E
Sequences producing significant alignments: (Bits) Value
Ahg910343 jgi|Araly1|910343|Al_scaffold_0001_597 1869 0.0
> Ahg910343 jgi|Araly1|910343|Al_scaffold_0001_597
Length=1161
Score = 1869 bits (1012), Expect = 0.0
Identities = 1114/1164 (96%), Gaps = 3/1164 (0%)
Strand=Plus/Plus
Query 192 ATGGCTCAAGAAGGTCAAAACATCGATGAGCCGGTTGTTATTGGAGAGGAAAAAGGTTCT 251
||| |||||| || ||||||||| ||||||||||| ||| || |||||||||||||||
Sbjct 1 ATGTCTCAAGGAGATCAAAACATTGATGAGCCGGTAGTTGTTATTGAGGAAAAAGGTTCT 60
Query 252 GTAAGATTGACTACTCTTAACCGCCCTCGTCAGCTGAATGTCATCTCTCCGGAAGTGGTC 311
|| ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GTGAGATTGACTGTTCTAAACCGCCCTCGTCAGCTGAATGTCATCTCTCCGGAAGTGGTC 120
Query 312 TTTAAGCTTGCAGAATATCTTGAATTGTGGGAGAAGGATGACCAAACAAAGCTTATATTG 371
| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 121 CTCAAGCTTGCAGAATATCTCGAATTGTGGGAGAAGGATGACCAAACAAAGCTTATATTG 180
Query 372 ATCAAGGGTACAGGTAGAGCTTTCTCCGCCGGTGGTGATCTAAAGGTGTTTTATCACGGA 431
||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 181 ATCAAGGGTGCAGGTAGAGCTTTCTCCGCCGGTGGTGATCTGAAGGTGTTTTATCACGGC 240
Query 432 CAGGAATCAAAGGATTCTTGCCTTGAGGTTGTTTACCGGATGTACTGGCTGTGTTATCAT 491
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 241 CAGGAATCAAAGGATTCTTGCCTTGAGGTTGTTTACCGGATGTACTGGCTTTGCTATCAT 300
Query 492 ATCCACACATACAAGAAGACGCAGGTGTCTCTGGTTAATGGAATATCGATGGGTGGAGGT 551
|||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||
Sbjct 301 ATCCACACATACAAGAAGACACAGGTTTCTCTTGTTAATGGAATATCGATGGGTGGAGGT 360
Query 552 GCAGCATTGATGGTCCCTATGAAGTTTTCAGTTGTGACAGAGAAAACTGTTTTTGCGACT 611
||| |||||||||| || ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 361 GCATCATTGATGGTTCCAATGAAGTTTTCAGTTGTGACAGAGAAAACTGTTTTCGCGACT 420
Query 612 CCAGAAGCAAGTTTCGGGTTTCACACTGATTGCGGGTTCTCCTACATCCATTCACGTCTT 671
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 421 CCAGAAGCAAGTTTCGGGTTTCACACTGATTGCGGGTTCTCCTACATCCATTCACATCTT 480
Query 672 CCTGGTCATTTAGGAGAGTTCTTGGCTTTAACTGGGGCAAGATTGAACGGCAAAGAACTT 731
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 CCTGGTCATTTAGGAGAGTTCTTGGCTTTAACTGGGGCAAGATTGAACGGCAAAGAACTT 540
Query 732 GTAGCAATTGGAATGGCAACACATTTTGTACCTTCTGGTAAATTGATGGATCTGGAGGCA 791
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GTAGCAATTGGAATGGCAACACATTTTGTACCTTCTGGTAAATTGATGGATCTGGAGGCA 600
Query 792 CGGCTTGTGAGTTTAGACTCAGGAGATGCGGATGTAGTCCAATCCACAATTGAAGAGTTC 851
| |||||||||||||||||||||||| | ||||||||||| |||||||||||||||||||
Sbjct 601 CAGCTTGTGAGTTTAGACTCAGGAGACGTGGATGTAGTCCGATCCACAATTGAAGAGTTC 660
Query 852 TCCGAGAAAGTCAACCTTGACAAAGACAGCATCCTTAACAAGCAGTCGGTAATCAATGAG 911
||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 661 TCCGAGAAAGTCAACATTGACAAAGACAGCATCCTTAACAAGCAGTCTGTAATCAATGAG 720
Query 912 TGTTTCTCAAAAGAAAGTGTGAAGCAGATCATACAAGCATTTGAAGCTGAAGCAAGCAAA 971
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 721 TGTTTCTCAAAAGAAAGTGTGAAGCAAATCATACAAGCATTTGAAGCTGAAGCAAGCAAA 780
Query 972 GACGGGAATGAATGGATAACTCCAGTCATCAAAGGTCTAAAGCGATCGTCACCCACAGGG 1031
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 GAAGGGAATGAATGGATTACTCCAGTCATCAAAGGTCTAAAGCGATCGTCACCCACAGGG 840
Query 1032 TTGAAGATAGTACTACAATCGATCCGTGAAGGTAGAAAACAAACGCTGAGTGATTGCCTG 1091
|||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct 841 TTGAAGATAGTACTACGATCGATCCGTGAAGGTAGGAAACAAACGCTGAGTGATTGCCTG 900
Query 1092 AAGAAAGAGTTTCGGCTCACCTTGAATATCTTGAGGAAAACCATATCCCCTGATATGTAT 1151
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 901 AAGAAAGAGTTTCGGCTCACCGTGAATATCTTGAGGAAAACCATATCCCCTGATATGTAT 960
Query 1152 GAGGGTATAAGGGCTCTGACCATAGACAAAGACAATTCTCCAAAGTGGAATCCAGCGACA 1211
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 GAGGGTATAAGGGCTCTGACCATAGACAAAGACAATTCTCCAAAGTGGAATCCAGCGACA 1020
Query 1212 TTAGATGAGGTGGATGATGAGAAAATCAACTCGGTGTTTAAGCTCTTTGAGGATGATGAT 1271
||||||||||||||||| |||||||| |||||||||||||||| ||||||||||||| ||
Sbjct 1021 TTAGATGAGGTGGATGACGAGAAAATTAACTCGGTGTTTAAGCCCTTTGAGGATGAT-AT 1079
Query 1272 ATTGAACTACAAATCCCTGAAACAGAAGAAAACAGGTGGGGAGGCAAATACGAGACTTCA 1331
| || || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 -T-GAGCTTCAAATCCCTGAAACAGAAGAAAACAGGTGGGGAGGCAAATACGAGACTTCA 1137
Query 1332 GGCTACGCATCTGTACGAGGATAG 1355
||||| ||||||||||||||||||
Sbjct 1138 GGCTATGCATCTGTACGAGGATAG 1161
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58506616320
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5