BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G06570.1
Length=1554
Score E
Sequences producing significant alignments: (Bits) Value
Ahg919374 jgi|Araly1|919374|scaffold_100655.1 2211 0.0
> Ahg919374 jgi|Araly1|919374|scaffold_100655.1
Length=1425
Score = 2211 bits (1197), Expect = 0.0
Identities = 1353/1429 (95%), Gaps = 8/1429 (1%)
Strand=Plus/Plus
Query 67 TAGCAGAGTTGGTGAAATCAATGGGCCACCAAAACGCCGCCGTTTCAGAGAATCAAAACC 126
||||||||||||||||||||||||||||| | |||||||||||||| || | |||| | |
Sbjct 1 TAGCAGAGTTGGTGAAATCAATGGGCCACGAGAACGCCGCCGTTTCGGATATTCAACATC 60
Query 127 ATGATGACGGCGCTGCGTCGTCGCCGGGATTCAAGCTCGTCGGATTTTCCAAGTTCGTAA 186
||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |
Sbjct 61 ATGATGACGGCGCTGCGTCGTCGCCGGGATTCAAGCTGGTCGGATTCTCCAAGTTCGTTA 120
Query 187 GAAAGAATCCAAAGTCTGATAAATTCAAGGTTAAGCGCTTCCATCACATCGAGTTCTGGT 246
| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 121 GGAAGAATCCAAAGTCTGATAAATTCAAGGTTAAGCGTTTCCACCACATCGAGTTCTGGT 180
Query 247 GCGGCGACGCAACCAACGTCGCTCGTCGCTTCTCCTGGGGTCTGGGGATGAGATTCTCCG 306
|||||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 181 GCGGCGACGCCACCAACGTCGCTCGTCGCTTCTCCTGGGGTCTCGGGATGAGGTTCTCCG 240
Query 307 CCAAATCCGATCTTTCCACCGGAAACATGGTTCACGCCTCTTACCTACTCACCTCCGGTG 366
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 241 CCAAATCCGATCTCTCCACCGGAAACATGGTTCACGCCTCTTACCTACTCACCTCCGGCG 300
Query 367 ACCTCCGATTCCTTTTCACTGCTCCTTACTCTCCGTCTCTCTCCGCCGGAGAGATTAAAC 426
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 301 ACCTCCGATTCCTTTTCACTGCTCCTTACTCTCCGTCTCTCTCCGCCGGAGAAATTAAAC 360
Query 427 CGACAACCACAGCTTCTATCCCAAGTTTCGATCACGGCTCTTGTCGTTCCTTCTTCTCTT 486
|||||| |||||||||||||||||||||||||||| |||||| || |||||||||||||
Sbjct 361 CGACAATGACAGCTTCTATCCCAAGTTTCGATCACGTCTCTTGCCGCTCCTTCTTCTCTT 420
Query 487 CACATGGTCTCGGTGTTAGAGCCGTTGCGATTGAAGTAGAAGACGCAGAGTCAGCTTTCT 546
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CACATGGTCTCGGCGTAAGAGCCGTTGCGATTGAAGTAGAAGACGCAGAGTCAGCTTTCT 480
Query 547 CCATCAGTGTAGCTAATGGCGCTATTCCTTCGTCGCCTCCTATCGTCCTCAATGAAGCAG 606
|||||||||| |||||||| |||||||||||||||||||||||||||||| | |||||||
Sbjct 481 CCATCAGTGTCGCTAATGGTGCTATTCCTTCGTCGCCTCCTATCGTCCTCGACGAAGCAG 540
Query 607 TTACGATCGCTGAGGTTAAACTATACGGCGATGTTGTTCTCCGATATGTTAGTTACAAA- 665
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 TTACTATCGCTGAGGTTAAACTATACGGCGATGTTGTTCTCCGATATGTTAGTTACAAAG 600
Query 666 GCAGAAGATACCGAAAAATCCGAATTCTTGCCAGGGTTCGAGCGTGTAGAGGATGCGTCG 725
|| ||| | |||| ||||| |||||||||||||| || |||| ||| |||||| |||||
Sbjct 601 GCGGAA-ACACCGGTAAATCGGAATTCTTGCCAGGATTTGAGCCTGTGGAGGATACGTCG 659
Query 726 TCGTTCCCATTGGATTATGGTATCCGGCGGCTTGACCACGCCGTGGGAAACGTTCCTGAG 785
||||| ||||||||||| ||||| || |||||||||||||||||||||||||||||||||
Sbjct 660 TCGTTTCCATTGGATTACGGTATACGTCGGCTTGACCACGCCGTGGGAAACGTTCCTGAG 719
Query 786 CTTGGTCCGGCTTTAACTTATGTAGCGGGGTTCACTGGTTTTCACCAATTCGCAGAGTTC 845
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 720 CTTGGTCCGGCTTTGACTTATGTCGCGGGGTTCACTGGTTTTCACCAATTCGCAGAGTTC 779
Query 846 ACAGCAGACGACGTTGGAACCGCCGAGAGCGGTTTAAATTCAGCGGTCCTGGCTAGCAAT 905
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 780 ACAGCAGACGACGTTGGAACCGCCGAGAGCGGTTTAAATTCAGCGGTCCTGGCTAACAAT 839
Query 906 GATGAAATGGTTCTTCTACCGATTAACGAGCCAGTGCACGGAAC-AAAGAGGAAGAGTCA 964
||||| ||||||||||| ||||||||||||||||||||||| || ||| |||||||||||
Sbjct 840 GATGAGATGGTTCTTCTGCCGATTAACGAGCCAGTGCACGGGACGAAA-AGGAAGAGTCA 898
Query 965 GATTCAGACGTATTTGGAACATAACGAAGGCGCAGGGCTACAACATCTGGCTCTGATGAG 1024
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 899 GATTCAGACGTATTTGGAACACAACGAAGGCGCAGGGCTACAACATCTTGCTCTGATGAG 958
Query 1025 TGAAGACATATTCAGGACCCTGAGAGAGATGAGGAAGAGGAGCAGTATTGGAGGATTCGA 1084
|||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct 959 TGAAGACATATTCAGGACTCTGAGAGAGATGAGGAAGAGGAGCAGTGTTGGAGGATTCGA 1018
Query 1085 CTTCATGCCTTCTCCTCCGCCTACTTACTACCAGAATCTCAAGAAACGGGTCGGCGACGT 1144
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1019 CTTCATGCCTTCTCCTCCGCCTACTTACTACCAGAATCTGAAGAAACGGGTCGGCGACGT 1078
Query 1145 GCTCAGCGATGATCAGATCAAGGAGTGTGAGGAATTAGGGATTCTTGTAGACAGAGATGA 1204
||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1079 GCTGAGCGATGAACAGATCAAGGAGTGTGAGGAATTAGGGATTCTTGTGGACAGAGATGA 1138
Query 1205 TCAAGGGACGTTGCTTCAAATCTTCACAAAACCACTAGGTGACAGGCCGACGATATTTAT 1264
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1139 TCAAGGGACGTTGCTTCAAATCTTCACAAAACCACTTGGTGACAGGCCGACGATATTTAT 1198
Query 1265 AGAGATAATCCAGAGAGTAGGATGCATGATGAAAGATGAGGAAGGGAAGGCTTACCAGAG 1324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 AGAGATAATCCAGAGAGTAGGATGCATGATGAAAGATGAGGAAGGGAAGGCTTACCAGAG 1258
Query 1325 TGGAGGATGTGGTGGTTTTGGCAAAGGCAATTTCTCTGAGCTCTTCAAGTCCATTGAAGA 1384
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 TGGAGGATGTGGTGGCTTTGGCAAAGGCAATTTCTCTGAGCTCTTCAAGTCCATTGAAGA 1318
Query 1385 ATACGAAAAGACTCTTGAAGCCAAACAG-TTAGTGGGATGAACAAGAAGAAGAACCAACT 1443
||||| ||||||||||||||||||||| || ||||||||||||||| ||||||||||||
Sbjct 1319 GTACGAGAAGACTCTTGAAGCCAAACAGCTT-GTGGGATGAACAAGAGGAAGAACCAACT 1377
Query 1444 AAAG-GATTGTGTAATTAATGTAAAACTGTTTTATCTTATCAAAACAAT 1491
||| | |||||||||||||||| ||||| ||||| |||||||||||||
Sbjct 1378 AAAATG-TTGTGTAATTAATGTATAACTGCTTTATGTTATCAAAACAAT 1425
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58201894360
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5