BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G06580.1
Length=2052
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470679 jgi|Araly1|470679|fgenesh2_kg.1__633__AT1G06580.1 2333 0.0
> Ahg470679 jgi|Araly1|470679|fgenesh2_kg.1__633__AT1G06580.1
Length=1885
Score = 2333 bits (1263), Expect = 0.0
Identities = 1521/1642 (93%), Gaps = 32/1642 (2%)
Strand=Plus/Plus
Query 1 AGACCCCTCCCTGCTCGCCGGAGCACTACTCGGCGAC-T--TCAGATCTTCTTTCAGGGT 57
||| ||||||||||||||||||||||||||||||| | | || |||||||||| |||||
Sbjct 1 AGATCCCTCCCTGCTCGCCGGAGCACTACTCGGCGTCTTCGTCGGATCTTCTTTTAGGGT 60
Query 58 TCTTCCAGGAATTAGATTGTCAACGAATCCAATCTTCTGAAACAAAAATCTTCGGATGCG 117
|| |||||||| |||||||| | || ||| ||| | |||||||||
Sbjct 61 TCATCCAGGAACTAGATTGT---C-AA---AAT-TTC-G------------TCGGATGCG 99
Query 118 AAGATCGATTGTGATTGTGATTGCGTTAACGGCGAAGGGGTTTCTTCATCGGCATCTTCT 177
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 100 GAGATCGATTTTGATTGTGATTGCGTTAACGGCGAAGGGGTTTCTTCATCGGCATCTTCT 159
Query 178 GGAGAAAGGTAATCTTGTAACTGCTCTCTCATTACGCATTTGCAATTCCCGAGCTTTTTC 237
|||||||||||||| ||||||||||||||||||| | | ||||||| | ||||||||||
Sbjct 160 GGAGAAAGGTAATCCTGTAACTGCTCTCTCATTAAACGTGTGCAATTTCGGAGCTTTTTC 219
Query 238 TGGTAGG-AGTGATTACCGAGAGAGATTGAGAAGTGGGCTTCACTCTATTAAGTTTAACG 296
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 220 TGGT-GGCAGTGATTACCGAGAGAGATTGAGAAGTGGGCTTCACTCTATTAAGTTTAACG 278
Query 297 ATGCACTTACTTTGTTCTGTGACATGGCTGAGTCTCATCCCCTCCCTTCCATTGTTGATT 356
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 279 ATGCACTTACTTTGTTCTGTGACATGGCTGAGTCTCGTCCCCTCCCTTCCATTGTTGATT 338
Query 357 TCAGTAGATTACTGATTGCCATTGCTAAGCTGAATAAGTATGAAGCTGTGATCTCTCTCT 416
||||||||||| || ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 339 TCAGTAGATTATTGGTTGCCATTGCTAAGCTGAAGAAGTATGAAGCTGTGATCTCTCTCT 398
Query 417 TTCGGCATTTGGAGATGTTGGGAATTTCACATGATCTCTATAGCTTCACTACTTTAATAG 476
|||||||| | ||||| ||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 399 TTCGGCATATAGAGATTTTGGGAATTTCACATGATCTCTATAGCTTCAGTACTTTAATCG 458
Query 477 ATTGTTTCTGCCGATGCGCTCGACTCTCTCTTGCTCTGTCATGTCTAGGAAAGATGATGA 536
|||| ||||| |||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct 459 ATTGCTTCTGTCGATGCTCTCGACTCTCTCTTGCTCTGTCATGTCTGGGAAAGATGATGA 518
Query 537 AGCTTGGTTTTGAGCCCAGCATAGTTACCTTTGGATCTCTGGTCAATGGATTCTGTCACG 596
|||||||||||||||||||||| ||||| ||||| |||||||| ||||||||||||||||
Sbjct 519 AGCTTGGTTTTGAGCCCAGCATTGTTACATTTGGCTCTCTGGTGAATGGATTCTGTCACG 578
Query 597 TAAATAGATTTTATGAAGCCATGTCTCTGGTTGATCAAATCGTGGGATTGGGATATGAAC 656
|||||||| || | || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 579 TAAATAGAATTCAGGAGGCCATGTCTCTGGTTGATCAAATCGTGGGATTGGGATATGAAC 638
Query 657 CTAATGTTGTAATCTACAACACTATCATTGATAGTCTCTGCGAAAAGGGACAAGTGAATA 716
||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||
Sbjct 639 CTAATGTTGTAATCTACAACACTATCATTGATAGTCTTTGCGAAAACCGACAAGTGGATA 698
Query 717 CTGCGCTGGATGTTTTGAAACATATG-AAGAAAATGGGAATTAGACCGGATGTTGTTACA 775
|||||||||| |||||||| |||||| || |||||||||||||||||||||||| ||||
Sbjct 699 CTGCGCTGGACGTTTTGAAGCATATGGAA-AAAATGGGAATTAGACCGGATGTTATTACC 757
Query 776 TACAACTCTCTCATTACTCGCCTTTTCCATTCTGGTACATGGGGCGTCTCTGCTCGAATA 835
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 758 TACAACTCTCTCATTACTCGCCTTTTCCATTCTGGTAAATGGGGCGTCTCTGCTCGAATA 817
Query 836 CTGAGTGATATGATGAGGATGGGAATC-AGCCCGGATGTAATCACTTTCAGTGCTTTGAT 894
||||||||||||||||||||||||||| | ||||||||||||||||||||||||| ||||
Sbjct 818 CTGAGTGATATGATGAGGATGGGAATCCA-CCCGGATGTAATCACTTTCAGTGCTATGAT 876
Query 895 CGATGTGTATGGGAAAGAGGGGCAGCTTTTAGAGGCTAAGAAACAGTACAATGAGATGAT 954
|||||||| |||||||||||||||||||||||||||||| ||||||||| | ||||||||
Sbjct 877 CGATGTGTTTGGGAAAGAGGGGCAGCTTTTAGAGGCTAAAAAACAGTACGACGAGATGAT 936
Query 955 TCAAAGGTCAGTTAATCCTAATATTGTCACTTACAATTCACTGATCAACGGGCTTTGCAT 1014
||||||||||||| | |||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 937 TCAAAGGTCAGTTGACCCTAATATAGTCACATACAATTCACTGATCAACGGGCTTTGCAT 996
Query 1015 TCACGGTCTTCTAGATGAAGCCAAAAAAGTTCTTAATGTTT-TGGTAAGTAAAGGTTTCT 1073
|||||||||||||||||||||||||||||| |||||| ||| ||||||||||||||||||
Sbjct 997 TCACGGTCTTCTAGATGAAGCCAAAAAAGTGCTTAAT-TTTATGGTAAGTAAAGGTTTCT 1055
Query 1074 TCCCAAATGCAGTGACTTATAATACTCTCATAAATGGATATTGCAAGGCCAAGAGGGTAG 1133
|||| |||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 1056 TCCCCAATGCAGTGACTTATAATACTCTCGTAAATGGATATTGCAAGTCCAAGAGGGTAG 1115
Query 1134 ATGATGGGATGAAAATCTTGTGCGTAATGTCCCGTGATGGAGTGGATGGTGACACATTCA 1193
|||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1116 ATGATGCGATGAAAATCTTGTGCGTAATGTCGCGTGATGGAGTGGATGGTGACACATTCA 1175
Query 1194 CTTACAATACTCTTTACCAAGGTTATTGTCAAGCGGGAAAATTTAGTGCTGCCGAAAAGG 1253
||||||| ||||||||||| ||||| ||||||||||| |||||| ||||||||||||||
Sbjct 1176 CTTACAACACTCTTTACCAGGGTTACTGTCAAGCGGGCCAATTTAATGCTGCCGAAAAGG 1235
Query 1254 TTTTAGGTCGGATGGTTTCTTGTGGCGTGCATCCCGATATGTATACCTTTAACATTTTGT 1313
|||||| |||||||||||||||||| |||| ||||||||| |||||||||||||||||||
Sbjct 1236 TTTTAGCTCGGATGGTTTCTTGTGGGGTGCGTCCCGATATTTATACCTTTAACATTTTGT 1295
Query 1314 TAGACGGTCTATGTGATCATGGAAAAATAGGAAAAGCATTGGTGAGACTGGAGGATTTGC 1373
|||||||||| ||||| ||||||||||||| |||||||||||||| | |||||||||| |
Sbjct 1296 TAGACGGTCTGTGTGAGCATGGAAAAATAGAAAAAGCATTGGTGAAATTGGAGGATTTAC 1355
Query 1374 AAAAGAGTAAAACAGTTGTTGGTATTATTACATATAATATTATCATCAAAGGGCTGTGTA 1433
|||||||| |||||||||| ||| ||||||| ||||||||||||||||||||| |||| |
Sbjct 1356 AAAAGAGTGAAACAGTTGTCGGTCTTATTACGTATAATATTATCATCAAAGGGATGTGCA 1415
Query 1434 AGGCTGATAAGGTGGAAGATGCTTGGTATTTATTTTGCAGTCTTGCTCTCAAAGGAGTAA 1493
||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 1416 AGGCTAATAAGGTGGAAGATGCTTGGTATTTATTTTGCAGTCTCGCTCTCAAAGGGGTAA 1475
Query 1494 GTCCTGATGTTATAACGTACATTACAATGATGATAGGCTTGCGTAGGAAAAGACTATGGC 1553
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1476 GTCCTGATGTTATAACGTACACTACAATGATGATAGGCTTGCGTAGGAAAAGACTATGGC 1535
Query 1554 GTGAAGCGCATGAGCTGTATAGAAAAATGCAAAAAGAGGATGGGCTTATGCCAATTAAGT 1613
|||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 1536 TTGAAGCGCATGAGCTGTATAGAAAAATGAAAAAAGATGATGGGCTTATGCCAATTAAGT 1595
Query 1614 AGACGTATAAAAGAGGTAAATA 1635
||||||||||||||||||||||
Sbjct 1596 AGACGTATAAAAGAGGTAAATA 1617
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77170836370
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5