BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G06620.1
Length=1292
Score E
Sequences producing significant alignments: (Bits) Value
Ahg910347 jgi|Araly1|910347|Al_scaffold_0001_601 1581 0.0
Ahg887940 jgi|Araly1|887940|Al_scaffold_0265_1 773 0.0
Ahg479417 jgi|Araly1|479417|fgenesh2_kg.3__2118__AT3G19000.1 58.4 1e-07
> Ahg910347 jgi|Araly1|910347|Al_scaffold_0001_601
Length=1089
Score = 1581 bits (856), Expect = 0.0
Identities = 1024/1103 (93%), Gaps = 19/1103 (2%)
Strand=Plus/Plus
Query 18 ATGGAGTCATCACTTCC--CCA-AGTTGCTGCACTTGATCGTTCAACTCTACTCAAAGCT 74
||||||||||||||||| | ||| |||||| || |||||||||||| ||| ||||||
Sbjct 1 ATGGAGTCATCACTTCCTATTACAGTCGCTGCAATTAATCGTTCAACTCAACTAAAAGCT 60
Query 75 TTCGACGAGACTAAAACCGGCGTGAAAGGCCTTATCGACGCCGGAATCACAGAGATTCCT 134
|||||||| |||||||||||||||||||||||| |||| ||||||||||| ||||||||
Sbjct 61 TTCGACGAAACTAAAACCGGCGTGAAAGGCCTTGTCGATGCCGGAATCACTGAGATTCCG 120
Query 135 TCGATATTTCGTGCACCTCCGGCTACTTTAACAAGTCCAAAACCACCTTCCTCCTCTGAT 194
|| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TCAATATTCCGTGCACCTCCGGCTACTTTAACAAGTCCAAAACCACCTTCCTCCTCTGAG 180
Query 195 TTCTCCATCCCCACAATCGATCTCAAAGGAGGTGGCACGGACTCGATCACGCGGCGGAGC 254
||| | ||||| ||||||||||||||||||||| | | |||||||||||||
Sbjct 181 TTCACTATCCCGACAATCGATCTCAAAGGAGGT------G----G--CACGCGGCGGAGC 228
Query 255 TTGGTGGAGAAGATCGGAGACGCGGCAGAGAAATGGGGATTTTTCCAGGTGATCAACCAC 314
|||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||
Sbjct 229 TTGGTGGAGAAGATCGGAGACGCGGCTGAGAAATGGGGTTTTTTCCAGGTGATCAATCAC 288
Query 315 GGGATCCCGATGGATGTGTTGGAGAAGATGATAGATGGGATTCGTGAGTTTCACGAGCAA 374
|||||||||||||||||||||||||||| || ||| || |||||||| ||||||||||||
Sbjct 289 GGGATCCCGATGGATGTGTTGGAGAAGAAGAAAGAAGGAATTCGTGACTTTCACGAGCAA 348
Query 375 GACACTGAAGTGAAGAAAGGGTTTTACTCTCGAGATCCAGCTAGTAAGATGGTATACAGC 434
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 349 GACACACAAGTGAAGAAAGGGTTTTACTCTCGAGATCCAGCTAGTAAGGTGGTATATAGC 408
Query 435 AGCAACTTCGATCTGTTTAGCTCACCGGCGGCGAATTGGAGAGATACACTTGGTTGTTAT 494
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 409 AGTAACTTCGATCTGTTTAGCTCACCGGCGGCGAATTGGAGAGATACACTCGGTTGTTAT 468
Query 495 ACAGCACCAGATCC-CCCGAGACCGGAGGACTTACCCGCCACTTGTGGGGAGATGATGAT 553
|| ||||||||||| ||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct 469 ACGGCACCAGATCCTCCC-AGACCGGAGGACTTACCCGCCGCTTGTGGGGAGATGATGAT 527
Query 554 TGAGTACTCAAAGGAAGTGATGAAATTGGGTAAATTACTCTTCGAGCTTCTCTCGGAAGC 613
||||||||||||||||||||||||||| |||||||| ||||| ||||||||||| |||||
Sbjct 528 TGAGTACTCAAAGGAAGTGATGAAATTAGGTAAATTGCTCTTTGAGCTTCTCTCAGAAGC 587
Query 614 TCTAGGGTTAAACACTAATCACCTCAAGGACATGGATTGCACTAACTCCTTGCTGTTGCT 673
||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct 588 TCTAGGGTTAAACACTAGTCACCTCAAGGACATGGATTGCACCAACTCCTTGCTGTTGCT 647
Query 674 CGGCCATTATTACCCGCCATGTCCCCAACCCGACCTTACTCTAGGCTTAACGAAACACTC 733
|||||||||||||||||||||||||||||||||||||||| |||| || || |||||||
Sbjct 648 CGGCCATTATTACCCGCCATGTCCCCAACCCGACCTTACTTTAGGTTTGACCAAACACTT 707
Query 734 CGACAACTCTTTTCTCACTATTCTTCTTCAAGACCATATCGGAGGGCTTCAAGTTCTTCA 793
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 708 CGACAACTCTTTTCTCACTATTCTTCTTCAAGACCATATCGGAGGGCTTCAAGTTCTCCA 767
Query 794 TGACCAATATTGGGTTGATGTTCCTCCTG-TCCCTGGAGCTCTTGTTGTTAACGTTGGAG 852
||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct 768 TGACCAATATTGGGTTGATGTTCCTCCTGTTCCC-GGAGCTCTTGTTGTTAACGTTGGAG 826
Query 853 ATCTTCTTCAGCTTATAACAAACGACAAGTTCATAAGCGTGGAGCATAGGGTTTTGGCCA 912
|||||||||||| |||||||||||||||||||| ||| |||||||||||||||||||| |
Sbjct 827 ATCTTCTTCAGCATATAACAAACGACAAGTTCAAAAGTGTGGAGCATAGGGTTTTGGCGA 886
Query 913 ATGTAGCTGGACCGAGAATTTCAGTGGCATGTTTCTTCAGCTCGTATTTGATGGCGAATC 972
||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 887 ATGTAGCTGGACCAAGAATTTCAGTGGCTTGTTTCTTCAGTTCGTATTTGATGGCGAATC 946
Query 973 CTCGAGTTTATGGACCCATCAAAGAGATTTTGTCTGAAGAAAACCCTCCTAATTATAGAG 1032
|||||||||||||||||||||||||||||||||||||| |||| ||||| || |||||||
Sbjct 947 CTCGAGTTTATGGACCCATCAAAGAGATTTTGTCTGAACAAAATCCTCCCAAATATAGAG 1006
Query 1033 ACACTACTATTACAGAGTATGCAAAGTTCTACAGATCCAAAGGATTCGATGGTACCTCTG 1092
|||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1007 ACACCACCATTACGGAGTATGCAAAGTTCTACAGATCCAAAGGATTCGATGGTACCTCTG 1066
Query 1093 GATTACTCTATCTCAAGATCTGA 1115
|||||||||||||||||||||||
Sbjct 1067 GATTACTCTATCTCAAGATCTGA 1089
> Ahg887940 jgi|Araly1|887940|Al_scaffold_0265_1
Length=687
Score = 773 bits (418), Expect = 0.0
Identities = 563/626 (90%), Gaps = 37/626 (6%)
Strand=Plus/Plus
Query 390 AAAGGGTTTTACTCTCGAGATCCAGCTAGTAAGATGGTATACAGCAGCAACTTCGATCTG 449
||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||
Sbjct 1 AAAGGGTTTTACTCTCGAGATCCAGCTAGTAAGGTGGTATATAGCAGTAACTTCGATCTG 60
Query 450 TTTAGCTCACCGGCGGCGAATTGGAGAGATACACTTGGTTGTTATACAGCACCAGATCC- 508
||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 61 TTTAGCTCACCGGCGGCGAATTGGAGAGATACACTCGGTTGTTATACGGCACCAGATCCT 120
Query 509 CCCGAGACCGGAGGACTTACCCGCCACTTGTGGGGAGATGATGATTGAGTACTCAAAGGA 568
||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 121 CCC-AGACCGGAGGACTTACCCGCCGCTTGT---GAGATGATGATTGAGTACTCAAAGGA 176
Query 569 AGTGATGAAATTGGGTAAATTACTCTTCGAGCTTCTCTCGGAAGCTCTAGGGTTAAACAC 628
|||||||||||| |||||||| ||||| |||||||| || ||||||||||||||||||||
Sbjct 177 AGTGATGAAATTAGGTAAATTGCTCTTTGAGCTTCTGTCAGAAGCTCTAGGGTTAAACAC 236
Query 629 TAATCAC-----CTC--A-AGG-A---CATGGATTGCACTAACTCCTTGCTGTTGCTCGG 676
| |||| ||| | || | |||||||||||| ||||||||||||||||||||
Sbjct 237 TCCTCACAAATGCTCGGACCGGCACTGCATGGATTGCACCAACTCCTTGCTGTTGCTCGG 296
Query 677 CCATTATTACCCGCCATGTCCCCAACCCGACCTTACTCTAGGCTTAACGAAACACTCCGA 736
||||||||||||||||||||||||||||||||||||| |||| || || ||||||| |||
Sbjct 297 CCATTATTACCCGCCATGTCCCCAACCCGACCTTACTTTAGGTTTGACCAAACACTTCGA 356
Query 737 CAACTCTTTTCTCACTATTCTTCTTCAAGACCATATCGGAGGGCTTCAAGTTCTTCATGA 796
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 357 CAACTCTTTTCTCACTATTCTTCTTCAAGACCATATCGGAGGGCTTCAAGTTCTCCATGA 416
Query 797 CCAATATTGGGTTGATGTTCCTCCTGT-CCCTGGAGCTCTTGTTGTTAACGTTGGAGATC 855
||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 417 CCAATATTGGGTTGATGTTCCTCCTGTTCCC-GGAGCTCTTGTTGTTAACGTTGGAGATC 475
Query 856 TTCTTCAGCTTATAACAAACGACAAGTTCATAAGCGTGGAGCATAGGGTTTTGGCCAATG 915
|||||||| || |||| | || | ||||||||||||||||||| ||||
Sbjct 476 TTCTTCAG-TT----CAAA--A---GT------G--TGGAGCATAGGGTTTTGGCGAATG 517
Query 916 TAGCTGGACCGAGAATTTCAGTGGCATGTTTCTTCAGCTCGTATTTGATGGCGAATCCTC 975
|||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 518 TAGCTGGACCAAGAATTTCAGTGGCTTGTTTCTTCAGTTCGTATTTGATGGCGAATCCTC 577
Query 976 GAGTTTATGGACCCATCAAAGAGATT 1001
|||||||||||||||||||||| |||
Sbjct 578 GAGTTTATGGACCCATCAAAGATATT 603
Score = 139 bits (75), Expect = 5e-32
Identities = 81/84 (96%), Gaps = 0/84 (0%)
Strand=Plus/Plus
Query 1032 GACACTACTATTACAGAGTATGCAAAGTTCTACAGATCCAAAGGATTCGATGGTACCTCT 1091
||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 604 GACACCACCATTACGGAGTATGCAAAGTTCTACAGATCCAAAGGATTCGATGGTACCTCT 663
Query 1092 GGATTACTCTATCTCAAGATCTGA 1115
||||||||||||||||||||||||
Sbjct 664 GGATTACTCTATCTCAAGATCTGA 687
> Ahg479417 jgi|Araly1|479417|fgenesh2_kg.3__2118__AT3G19000.1
Length=1191
Score = 58.4 bits (31), Expect = 1e-07
Identities = 36/38 (95%), Gaps = 1/38 (3%)
Strand=Plus/Plus
Query 279 GCAGAGAAATGGGGATTTTTCCAGGTGATCAACCACGG 316
||| ||| ||||||||||||||||||||||||||||||
Sbjct 304 GCA-AGAGATGGGGATTTTTCCAGGTGATCAACCACGG 340
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48301735839
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5