BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G06620.1 Length=1292 Score E Sequences producing significant alignments: (Bits) Value Ahg910347 jgi|Araly1|910347|Al_scaffold_0001_601 1581 0.0 Ahg887940 jgi|Araly1|887940|Al_scaffold_0265_1 773 0.0 Ahg479417 jgi|Araly1|479417|fgenesh2_kg.3__2118__AT3G19000.1 58.4 1e-07 > Ahg910347 jgi|Araly1|910347|Al_scaffold_0001_601 Length=1089 Score = 1581 bits (856), Expect = 0.0 Identities = 1024/1103 (93%), Gaps = 19/1103 (2%) Strand=Plus/Plus Query 18 ATGGAGTCATCACTTCC--CCA-AGTTGCTGCACTTGATCGTTCAACTCTACTCAAAGCT 74 ||||||||||||||||| | ||| |||||| || |||||||||||| ||| |||||| Sbjct 1 ATGGAGTCATCACTTCCTATTACAGTCGCTGCAATTAATCGTTCAACTCAACTAAAAGCT 60 Query 75 TTCGACGAGACTAAAACCGGCGTGAAAGGCCTTATCGACGCCGGAATCACAGAGATTCCT 134 |||||||| |||||||||||||||||||||||| |||| ||||||||||| |||||||| Sbjct 61 TTCGACGAAACTAAAACCGGCGTGAAAGGCCTTGTCGATGCCGGAATCACTGAGATTCCG 120 Query 135 TCGATATTTCGTGCACCTCCGGCTACTTTAACAAGTCCAAAACCACCTTCCTCCTCTGAT 194 || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 TCAATATTCCGTGCACCTCCGGCTACTTTAACAAGTCCAAAACCACCTTCCTCCTCTGAG 180 Query 195 TTCTCCATCCCCACAATCGATCTCAAAGGAGGTGGCACGGACTCGATCACGCGGCGGAGC 254 ||| | ||||| ||||||||||||||||||||| | | ||||||||||||| Sbjct 181 TTCACTATCCCGACAATCGATCTCAAAGGAGGT------G----G--CACGCGGCGGAGC 228 Query 255 TTGGTGGAGAAGATCGGAGACGCGGCAGAGAAATGGGGATTTTTCCAGGTGATCAACCAC 314 |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||| Sbjct 229 TTGGTGGAGAAGATCGGAGACGCGGCTGAGAAATGGGGTTTTTTCCAGGTGATCAATCAC 288 Query 315 GGGATCCCGATGGATGTGTTGGAGAAGATGATAGATGGGATTCGTGAGTTTCACGAGCAA 374 |||||||||||||||||||||||||||| || ||| || |||||||| |||||||||||| Sbjct 289 GGGATCCCGATGGATGTGTTGGAGAAGAAGAAAGAAGGAATTCGTGACTTTCACGAGCAA 348 Query 375 GACACTGAAGTGAAGAAAGGGTTTTACTCTCGAGATCCAGCTAGTAAGATGGTATACAGC 434 ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| ||| Sbjct 349 GACACACAAGTGAAGAAAGGGTTTTACTCTCGAGATCCAGCTAGTAAGGTGGTATATAGC 408 Query 435 AGCAACTTCGATCTGTTTAGCTCACCGGCGGCGAATTGGAGAGATACACTTGGTTGTTAT 494 || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 409 AGTAACTTCGATCTGTTTAGCTCACCGGCGGCGAATTGGAGAGATACACTCGGTTGTTAT 468 Query 495 ACAGCACCAGATCC-CCCGAGACCGGAGGACTTACCCGCCACTTGTGGGGAGATGATGAT 553 || ||||||||||| ||| ||||||||||||||||||||| ||||||||||||||||||| Sbjct 469 ACGGCACCAGATCCTCCC-AGACCGGAGGACTTACCCGCCGCTTGTGGGGAGATGATGAT 527 Query 554 TGAGTACTCAAAGGAAGTGATGAAATTGGGTAAATTACTCTTCGAGCTTCTCTCGGAAGC 613 ||||||||||||||||||||||||||| |||||||| ||||| ||||||||||| ||||| Sbjct 528 TGAGTACTCAAAGGAAGTGATGAAATTAGGTAAATTGCTCTTTGAGCTTCTCTCAGAAGC 587 Query 614 TCTAGGGTTAAACACTAATCACCTCAAGGACATGGATTGCACTAACTCCTTGCTGTTGCT 673 ||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| Sbjct 588 TCTAGGGTTAAACACTAGTCACCTCAAGGACATGGATTGCACCAACTCCTTGCTGTTGCT 647 Query 674 CGGCCATTATTACCCGCCATGTCCCCAACCCGACCTTACTCTAGGCTTAACGAAACACTC 733 |||||||||||||||||||||||||||||||||||||||| |||| || || ||||||| Sbjct 648 CGGCCATTATTACCCGCCATGTCCCCAACCCGACCTTACTTTAGGTTTGACCAAACACTT 707 Query 734 CGACAACTCTTTTCTCACTATTCTTCTTCAAGACCATATCGGAGGGCTTCAAGTTCTTCA 793 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 708 CGACAACTCTTTTCTCACTATTCTTCTTCAAGACCATATCGGAGGGCTTCAAGTTCTCCA 767 Query 794 TGACCAATATTGGGTTGATGTTCCTCCTG-TCCCTGGAGCTCTTGTTGTTAACGTTGGAG 852 ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| Sbjct 768 TGACCAATATTGGGTTGATGTTCCTCCTGTTCCC-GGAGCTCTTGTTGTTAACGTTGGAG 826 Query 853 ATCTTCTTCAGCTTATAACAAACGACAAGTTCATAAGCGTGGAGCATAGGGTTTTGGCCA 912 |||||||||||| |||||||||||||||||||| ||| |||||||||||||||||||| | Sbjct 827 ATCTTCTTCAGCATATAACAAACGACAAGTTCAAAAGTGTGGAGCATAGGGTTTTGGCGA 886 Query 913 ATGTAGCTGGACCGAGAATTTCAGTGGCATGTTTCTTCAGCTCGTATTTGATGGCGAATC 972 ||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||| Sbjct 887 ATGTAGCTGGACCAAGAATTTCAGTGGCTTGTTTCTTCAGTTCGTATTTGATGGCGAATC 946 Query 973 CTCGAGTTTATGGACCCATCAAAGAGATTTTGTCTGAAGAAAACCCTCCTAATTATAGAG 1032 |||||||||||||||||||||||||||||||||||||| |||| ||||| || ||||||| Sbjct 947 CTCGAGTTTATGGACCCATCAAAGAGATTTTGTCTGAACAAAATCCTCCCAAATATAGAG 1006 Query 1033 ACACTACTATTACAGAGTATGCAAAGTTCTACAGATCCAAAGGATTCGATGGTACCTCTG 1092 |||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1007 ACACCACCATTACGGAGTATGCAAAGTTCTACAGATCCAAAGGATTCGATGGTACCTCTG 1066 Query 1093 GATTACTCTATCTCAAGATCTGA 1115 ||||||||||||||||||||||| Sbjct 1067 GATTACTCTATCTCAAGATCTGA 1089 > Ahg887940 jgi|Araly1|887940|Al_scaffold_0265_1 Length=687 Score = 773 bits (418), Expect = 0.0 Identities = 563/626 (90%), Gaps = 37/626 (6%) Strand=Plus/Plus Query 390 AAAGGGTTTTACTCTCGAGATCCAGCTAGTAAGATGGTATACAGCAGCAACTTCGATCTG 449 ||||||||||||||||||||||||||||||||| ||||||| ||||| |||||||||||| Sbjct 1 AAAGGGTTTTACTCTCGAGATCCAGCTAGTAAGGTGGTATATAGCAGTAACTTCGATCTG 60 Query 450 TTTAGCTCACCGGCGGCGAATTGGAGAGATACACTTGGTTGTTATACAGCACCAGATCC- 508 ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| Sbjct 61 TTTAGCTCACCGGCGGCGAATTGGAGAGATACACTCGGTTGTTATACGGCACCAGATCCT 120 Query 509 CCCGAGACCGGAGGACTTACCCGCCACTTGTGGGGAGATGATGATTGAGTACTCAAAGGA 568 ||| ||||||||||||||||||||| ||||| |||||||||||||||||||||||||| Sbjct 121 CCC-AGACCGGAGGACTTACCCGCCGCTTGT---GAGATGATGATTGAGTACTCAAAGGA 176 Query 569 AGTGATGAAATTGGGTAAATTACTCTTCGAGCTTCTCTCGGAAGCTCTAGGGTTAAACAC 628 |||||||||||| |||||||| ||||| |||||||| || |||||||||||||||||||| Sbjct 177 AGTGATGAAATTAGGTAAATTGCTCTTTGAGCTTCTGTCAGAAGCTCTAGGGTTAAACAC 236 Query 629 TAATCAC-----CTC--A-AGG-A---CATGGATTGCACTAACTCCTTGCTGTTGCTCGG 676 | |||| ||| | || | |||||||||||| |||||||||||||||||||| Sbjct 237 TCCTCACAAATGCTCGGACCGGCACTGCATGGATTGCACCAACTCCTTGCTGTTGCTCGG 296 Query 677 CCATTATTACCCGCCATGTCCCCAACCCGACCTTACTCTAGGCTTAACGAAACACTCCGA 736 ||||||||||||||||||||||||||||||||||||| |||| || || ||||||| ||| Sbjct 297 CCATTATTACCCGCCATGTCCCCAACCCGACCTTACTTTAGGTTTGACCAAACACTTCGA 356 Query 737 CAACTCTTTTCTCACTATTCTTCTTCAAGACCATATCGGAGGGCTTCAAGTTCTTCATGA 796 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 357 CAACTCTTTTCTCACTATTCTTCTTCAAGACCATATCGGAGGGCTTCAAGTTCTCCATGA 416 Query 797 CCAATATTGGGTTGATGTTCCTCCTGT-CCCTGGAGCTCTTGTTGTTAACGTTGGAGATC 855 ||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| Sbjct 417 CCAATATTGGGTTGATGTTCCTCCTGTTCCC-GGAGCTCTTGTTGTTAACGTTGGAGATC 475 Query 856 TTCTTCAGCTTATAACAAACGACAAGTTCATAAGCGTGGAGCATAGGGTTTTGGCCAATG 915 |||||||| || |||| | || | ||||||||||||||||||| |||| Sbjct 476 TTCTTCAG-TT----CAAA--A---GT------G--TGGAGCATAGGGTTTTGGCGAATG 517 Query 916 TAGCTGGACCGAGAATTTCAGTGGCATGTTTCTTCAGCTCGTATTTGATGGCGAATCCTC 975 |||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||| Sbjct 518 TAGCTGGACCAAGAATTTCAGTGGCTTGTTTCTTCAGTTCGTATTTGATGGCGAATCCTC 577 Query 976 GAGTTTATGGACCCATCAAAGAGATT 1001 |||||||||||||||||||||| ||| Sbjct 578 GAGTTTATGGACCCATCAAAGATATT 603 Score = 139 bits (75), Expect = 5e-32 Identities = 81/84 (96%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 1032 GACACTACTATTACAGAGTATGCAAAGTTCTACAGATCCAAAGGATTCGATGGTACCTCT 1091 ||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 604 GACACCACCATTACGGAGTATGCAAAGTTCTACAGATCCAAAGGATTCGATGGTACCTCT 663 Query 1092 GGATTACTCTATCTCAAGATCTGA 1115 |||||||||||||||||||||||| Sbjct 664 GGATTACTCTATCTCAAGATCTGA 687 > Ahg479417 jgi|Araly1|479417|fgenesh2_kg.3__2118__AT3G19000.1 Length=1191 Score = 58.4 bits (31), Expect = 1e-07 Identities = 36/38 (95%), Gaps = 1/38 (3%) Strand=Plus/Plus Query 279 GCAGAGAAATGGGGATTTTTCCAGGTGATCAACCACGG 316 ||| ||| |||||||||||||||||||||||||||||| Sbjct 304 GCA-AGAGATGGGGATTTTTCCAGGTGATCAACCACGG 340 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 48301735839 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5