BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G06630.1
Length=1745
Score E
Sequences producing significant alignments: (Bits) Value
Ahg324460 jgi|Araly1|324460|fgenesh1_pm.C_scaffold_5002004 313 3e-84
Ahg483055 jgi|Araly1|483055|fgenesh2_kg.4__2115__AT2G40120.1 91.6 2e-17
> Ahg324460 jgi|Araly1|324460|fgenesh1_pm.C_scaffold_5002004
Length=1272
Score = 313 bits (169), Expect = 3e-84
Identities = 404/513 (79%), Gaps = 33/513 (6%)
Strand=Plus/Plus
Query 134 CAATCAACTGGCTCCCTGACG-AGATTCTGGGCAAAATCTTGTCATTACTTG-CGACAAA 191
|||||| ||| ||||| |||| || || |||||||||||||||| || | || |||||||
Sbjct 41 CAATCAGCTGTCTCCCAGACGAAG-TTTTGGGCAAAATCTTGTCGTTTC-TGCCGACAAA 98
Query 192 ACAGGCTGTTTCAACATCGGTTCTTTCTAAAAAGTGGAGGACTCTCTTTAAATTAGTGGA 251
||||||||| |||||||| |||| || |||||||||| | | | || ||| | |||
Sbjct 99 ACAGGCTGTATCAACATCTCTTCTCTCGAAAAAGTGGACTTTTATGTATAGATTGGCGGA 158
Query 252 TACCCTCGAGTTTGACGATTCTGT-C-TCTGGAATGGGTGAACAAGAAGCGAGCTATGTG 309
| || || ||||| ||||| | | ||| | ||| | ||| || | || | ||||
Sbjct 159 TTGTCTTGATTTTGATGATTCCCTCCATCT-GCATGCG-GAA-GAG-GGTGAAC-ATGTA 213
Query 310 TTTCCGGAGAGCTTTAAGGATTTG-GTGGATCGAACAGTAGCTTTGCAGTGTGATTATCC 368
||||| |||||||| || | || |||||||||||| | |||||||| ||||||||| |
Sbjct 214 TTTCCAGAGAGCTTCAA-AAACTGTGTGGATCGAACACTGGCTTTGCAATGTGATTATTC 272
Query 369 GATCAGGAAGTTGTCACTAAAATGTCATGTTGGCAG-GGACGA-TGAAC-AACGAAA-GG 424
|||| ||| || ||||||||||| || |||| | | || | || || | ||| ||
Sbjct 273 AATCAAGAAATTCTCACTAAAATGCCACATTGG-TGCGCAC-AGTG-ACTGTC-AAAGGG 328
Query 425 CTTGTGTGGGCCGCTGGATATCGAATGTCGTAGGGCGCGGTGTT-TCAGAAGTGGTA-CT 482
|||||||||| ||||||||||| ||||| ||||| || |||||| | ||| ||| | ||
Sbjct 329 CTTGTGTGGGACGCTGGATATCTAATGTTGTAGGACGTGGTGTTGT-TGAATTGG-ACCT 386
Query 483 A-AGGATCAAT-GATCGTGGTTTACACTTTCTGTCTCCTCAGCTCTT-GACATGCAAAAC 539
| | ||| ||| ||| | ||| |||||||| || ||||||||||||| | || |||||||
Sbjct 387 ACA-GAT-AATAGATTGGGGTCTACACTTTATGCCTCCTCAGCTCTTCG-CAAGCAAAAC 443
Query 540 ACTGGTTAAGCTGACACTAGGCACA-CGTCTCTTTCTTGGAAAGCTTCCTTCATATGTGT 598
|||||||||||||||||||| ||| || ||| |||||||| ||||||||||||||||
Sbjct 444 GCTGGTTAAGCTGACACTAGGGACAGCG-CTCAACCTTGGAAATCTTCCTTCATATGTGT 502
Query 599 CACTTCCATCTCTTAAGTTTCTCTTCATCCATA 631
||||||||||||||||||||||||||||| |||
Sbjct 503 CACTTCCATCTCTTAAGTTTCTCTTCATCGATA 535
> Ahg483055 jgi|Araly1|483055|fgenesh2_kg.4__2115__AT2G40120.1
Length=2175
Score = 91.6 bits (49), Expect = 2e-17
Identities = 61/67 (91%), Gaps = 0/67 (0%)
Strand=Plus/Plus
Query 1266 GAAAAACAAACTCGGTTCTTTTGATTTCGAGAAGTTTCTGTTCCCGATTCCTCCGCCAAT 1325
|||||||||||||| |||||| ||||||||||||||||||||||||||||| || || ||
Sbjct 401 GAAAAACAAACTCGCTTCTTTCGATTTCGAGAAGTTTCTGTTCCCGATTCCGCCACCGAT 460
Query 1326 CAAAATC 1332
|| ||||
Sbjct 461 CAGAATC 467
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65477131155
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5