BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G06640.1
Length=1381
Score E
Sequences producing significant alignments: (Bits) Value
Ahg910348 jgi|Araly1|910348|Al_scaffold_0001_602 1620 0.0
Ahg470684 jgi|Araly1|470684|fgenesh2_kg.1__638__AT1G06650.2 1399 0.0
> Ahg910348 jgi|Araly1|910348|Al_scaffold_0001_602
Length=1107
Score = 1620 bits (877), Expect = 0.0
Identities = 1038/1115 (93%), Gaps = 13/1115 (1%)
Strand=Plus/Plus
Query 29 ATGGAGAGC-ACGAAGATTGCTCCTTCATTCGATCGTGCCAGTGAGCTTAAAGCTTTCGA 87
||||||| | | |||||||| ||||||| |||||||||||||||||||||||||| ||
Sbjct 1 ATGGAGA-CGAAGAAGATTG---CTTCATTTGATCGTGCCAGTGAGCTTAAAGCTTTTGA 56
Query 88 TGAGACG-AAGACTGGTGTGAAAGGACTCGTTGACTCTGGAATCTCAAAGATTCCACGCA 146
||||| | ||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 57 TGAGA-GCAAGACTGGTGTGAAAGGACTCGTTGACGCTGGAATCTCACAGATTCCACGCA 115
Query 147 TTTTCCATCACTCATCTGTCGAACTAGCAAACCCTAAACCACTTCCCTCGGACCTGCTAC 206
|||| |||||||||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 116 TTTTTCATCACTCATCTGTCGAACTAGCAGACCCTAAACCACTTCCCTCGGAGTTGCTAC 175
Query 207 ATCTCAAGACGATCCCAACGATCGATCTCGGAGGACGGGACTTCCAGGACGCGATTAAGC 266
|||| |||||||||||||||||| ||||||||||||||| |||| |||||||||||||||
Sbjct 176 ATCTAAAGACGATCCCAACGATCAATCTCGGAGGACGGGTCTTCGAGGACGCGATTAAGC 235
Query 267 ACAAGAACGCGATTGAAGGGATTAAAGAAGCAGCTGCCAAGTGGGGTTTCTTCCAAGTGA 326
|||||||||||||||||||||||| |||||| ||||| ||||||||||||||||||||||
Sbjct 236 ACAAGAACGCGATTGAAGGGATTAGAGAAGCGGCTGCGAAGTGGGGTTTCTTCCAAGTGA 295
Query 327 TCAACCATGGAGTTTCGCTCGAGCTTCTTGAGAAGATGAAAGATGGAGTTCGTGACTTTC 386
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 296 TTAACCATGGAGTTTCGCTCGATCTTCTTGAGAAGATGAAAGATGGAGTTCGTGACTTTC 355
Query 387 ATGAGCAACCTCCTGAAGTGAGGAAAGATTTGTACAGCCGCGATTTCGGCAGAAAGTTTA 446
|||||||||| ||||||||||||||||| ||||| |||||||||||| |||||||||||
Sbjct 356 ATGAGCAACCCCCTGAAGTGAGGAAAGAATTGTATAGCCGCGATTTCAACAGAAAGTTTA 415
Query 447 TCTATTTAAGTAATTTCGATCTCTACACTGCTGCAGCTGCGAATTGGAGAGACACATTCT 506
| ||||||||||| ||||||||||||| |||| ||||||| |||||||||||||||||||
Sbjct 416 TGTATTTAAGTAACTTCGATCTCTACAGTGCTCCAGCTGCAAATTGGAGAGACACATTCT 475
Query 507 ATTGTTACATGGCTCCAGATCCTCCAGAACCACAGGATCTGCCAGAGATTTGTAGGGATG 566
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 476 ATTGTTACATGGCTCCAGATCCTCCAAAACCAGAGGATCTGCCAGAGATTTGTAGGGATG 535
Query 567 TTATGATGGAATACTCAAAGCAAGTGATGATTTTGGGTGAATTTCTGTTTGAGCTTTTGT 626
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 536 TTATGATGGAATACTCAAAGCAAGTGATGATTTTGGGTGAATTTCTCTTTGAGCTTTTGT 595
Query 627 CAGAAGCACTAGGGTTGAACCCTAATCACCTCAAGGACATGGAGTGCTTAAAGGGTTTGC 686
||||||| |||||| |||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 596 CAGAAGCTCTAGGGCTGAACCCTAATCACCTCAAGGACATGGATTGCCTAAAGGGTTTGC 655
Query 687 GCATGCTTTGCCACTACTTCCCACCGTGTCCGGAGCCTGACCTAACTTTTGGCACAAGTA 746
||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 656 GCATGCTTTGCCATTACTTCCCACCGTGTCCAGAGCCTGACCTAACTTTTGGCACAAGTC 715
Query 747 AGCACTCCGACGGCTCTTTTCTTACCGTCCTTCTACCAGATAACATAGAAGGGCTTCAGG 806
||||||||||| |||||||||||||| |||| || |||||| | || |||||||||||||
Sbjct 716 AGCACTCCGACAGCTCTTTTCTTACCATCCTCCTTCCAGATCAGATCGAAGGGCTTCAGG 775
Query 807 TT-TGTCGTGA-GGGATACTGGTTCGATGTTCCTCATGTTCCCGGCGCTCTCATCATCAA 864
|| | |||||| ||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 776 TTCT-TCGTGAAGGG-TACTGGTTCGATGTTCCTCATGTTCCAGGCGCTCTCATCATCAA 833
Query 865 CATCGGAGATCTTCTGCAGCTTATAACAAACGACAAGTTCATCAGTTTGAAGCATAGAGT 924
||||||||||||| | |||||||||||||||||||| |||||||||||| |||| ||||
Sbjct 834 CATCGGAGATCTTTTACAGCTTATAACAAACGACAAATTCATCAGTTTGGGGCATCGAGT 893
Query 925 ATTGGCGAACAGAGCCACAAGAGCTCGAGTCTCTGTCGCATGTTTCTTC-CATACCCACG 983
||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 894 ATTGGCGAACAGAGCCACAAGAGCTCGAGTCTCTGTCGCATGTTTCTTCACC-ACCCACG 952
Query 984 TAAAACCAAATCCTAGAGTGTACGGACCCATTAAAGAGCTTGTGTCCGAAGAAAATCCTC 1043
||||||| ||||||||||| || ||||||||||||||||||||||| |||||||| ||||
Sbjct 953 TAAAACCCAATCCTAGAGTATATGGACCCATTAAAGAGCTTGTGTCTGAAGAAAACCCTC 1012
Query 1044 CAAAGTACAGAGAGACCACCATCAGAGATTACGCTACTTACTTCAATGGCAAAGGACTTG 1103
|||||||||||||||||||||| | | |||||||||||||||||||||||||||||||||
Sbjct 1013 CAAAGTACAGAGAGACCACCATTACAAATTACGCTACTTACTTCAATGGCAAAGGACTTG 1072
Query 1104 GCGGGACCTCTGCTTTGCTGGATTTTAAAGTATGA 1138
|||| |||||||||||||| ||||||||||||||
Sbjct 1073 GCGGAACCTCTGCTTTGCTCCATTTTAAAGTATGA 1107
> Ahg470684 jgi|Araly1|470684|fgenesh2_kg.1__638__AT1G06650.2
Length=1339
Score = 1399 bits (757), Expect = 0.0
Identities = 1060/1203 (88%), Gaps = 34/1203 (3%)
Strand=Plus/Plus
Query 5 TCTGTCTTACGAGAGACCAAAACGATGGAGAGC-ACGAAGATTGCTCCTTCATTCGATCG 63
||||| || ||||| || ||||| ||||||| | |||||||||||| |||||||||||||
Sbjct 44 TCTGTTTTTCGAGAAACTAAAACTATGGAGA-CGACGAAGATTGCTTCTTCATTCGATCG 102
Query 64 TGCCAGTGAGCTTAAAGCTTTCGATGAGACGAAGACT-GGTGTGAAAGGACTCGTTGACT 122
|||||||||||| |||||||| ||||||||||| | | |||||||||||||||||||||
Sbjct 103 TGCCAGTGAGCTCAAAGCTTTTGATGAGACGAA-AATGGGTGTGAAAGGACTCGTTGACG 161
Query 123 CTGGAATCTCA-AAGATTCCACGCAT-TTTCCATCACT-CATCTGTCGAACTAGCAAACC 179
| ||| | | | || ||||||||||| ||| ||||| | ||||| || || || ||||||
Sbjct 162 CAGGAGTTTTACAA-ATTCCACGCATCTTT-CATCA-TCCATCTATCAAATTATCAAACC 218
Query 180 CTAAACCACTTCCCTCGGACCTGCTACATCTCAAGACGATCCCAACGATCGATCTCGGAG 239
||||||||||| ||| ||| |||||||||||||||||||||||||||| ||||| ||||
Sbjct 219 CTAAACCACTTTTCTCAGACTTGCTACATCTCAAGACGATCCCAACGATTGATCTAGGAG 278
Query 240 GACGGGA-C-TTCCAGGACGCGATTAAGCACAAGAACGCGATTGAAGGGATTAAAGAAGC 297
|| ||| | || ||||||||| |||| |||||||||||||||||||| ||||||||
Sbjct 279 GA-AGGATCGTT-GAGGACGCGAGCAAGCGTAAGAACGCGATTGAAGGGATCAAAGAAGC 336
Query 298 AGCTGCCAAGTGGGGTTTCTTCCAAGTGATCAACCATGGAGTTTCGCTCGAGCTTCTTGA 357
||| | ||||||||||||||||| ||||||||||||||||||||||| || ||||||||
Sbjct 337 AGCAGAGAAGTGGGGTTTCTTCCAGGTGATCAACCATGGAGTTTCGCTTGATCTTCTTGA 396
Query 358 GAAGATGAAAGATGGAGTTCGTGACTTTCATGAGCAA-CCTCCTGAAGTGAGGAAAGATT 416
|||||||||||||||||||||||| ||||| |||||| || ||||||||||||||||| |
Sbjct 397 GAAGATGAAAGATGGAGTTCGTGATTTTCACGAGCAATCC-CCTGAAGTGAGGAAAGAAT 455
Query 417 TGTACAGCCGCGATTTCGGCAGAAAGTTTATCTATTTAAGTAATTTCGATCTCTACACTG 476
| || || ||||||||| |||||| |||| | |||||||||||||||||||||| || |
Sbjct 456 TCTATAGTCGCGATTTCAGCAGAAGGTTTCTGTATTTAAGTAATTTCGATCTCTTCAGTT 515
Query 477 CTGCAGCTGCGAATTGGAGAGACACATTCTATTGTTAC-ATGGCTCCAGATCCTCCAGAA 535
|| ||||||| |||||||||||||| |||| ||| ||| |||||||||||| ||||| ||
Sbjct 516 CTCCAGCTGCAAATTGGAGAGACACTTTCTCTTG-TACTATGGCTCCAGATACTCCAAAA 574
Query 536 CCACAGGATCTGCCAGAGATTTGTAGGGATGTTATGATGGAATACTCAAAGCAAGTGATG 595
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 575 CCACAGGATCTTCCGGAGATTTGTAGGGATGTTATGATGGAATACTCAAAGCAAGTGATG 634
Query 596 ATTTTGGGTGAATTTCTGTTTGAGCTTTTGTCAGAAGCACTAGGGTTG-AACCCTAATCA 654
||||||||| ||||||| ||||||||||| |||||||| ||||||||| |||| ||||||
Sbjct 635 ATTTTGGGTAAATTTCTCTTTGAGCTTTTATCAGAAGCTCTAGGGTTGGAACC-TAATCA 693
Query 655 CCTCAAGGACATGGAGTGCTTAAAGGGTTTGCGCATGCTTTGCCACTACTTCCCACCGTG 714
|||||| ||||| || |||| |||||||||| |||||| | ||| |||| |||||||||
Sbjct 694 CCTCAATGACATAGATTGCTCCAAGGGTTTGCTCATGCTCTCCCATTACTACCCACCGTG 753
Query 715 TCCGGAGCCTGACCTAACTTTTGGCACAAGTAAGCACTCCGACGGCTCTTTTCTTACCGT 774
||| ||||||||||||||||| ||||||||| ||||||||||| |||||||||||||||
Sbjct 754 TCCAGAGCCTGACCTAACTTTAGGCACAAGTCAGCACTCCGACAACTCTTTTCTTACCGT 813
Query 775 CCTTCTACCAGATAACATAGAAGGGCTTCAGGTTTGTCGTGA-GGGATACTGGTTCGATG 833
|||||| || ||| | || ||||||||||||||| |||| || ||| |||||||||||||
Sbjct 814 CCTTCTCCCCGATCAGATCGAAGGGCTTCAGGTTCGTCGCGATGGG-TACTGGTTCGATG 872
Query 834 TTCCTCATGTTCCCGGCGCTCTCATCATCAACATCGGAGATCTTCTGCAGCTTATAACAA 893
|||||||||||||||||||||| ||||||||||| ||||||||| | |||||||||||||
Sbjct 873 TTCCTCATGTTCCCGGCGCTCTAATCATCAACATTGGAGATCTTTTACAGCTTATAACAA 932
Query 894 ACGACAAGTTCATCAGTTTGAAGCATAGAGTATTGGCGAACAGAGCCACAAGAGCTCGAG 953
||||||| |||||||||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct 933 ACGACAAATTCATCAGTTTGGAGCATAGAGTATTGGCGAACAGAGCGACAAGAGCTCGAG 992
Query 954 TCTCTGTCGCATGTTTCTT--CCATACCC-ACGTAAAACCAAATCCTAGAGTGTACGGAC 1010
| ||||||||||||||||| ||| || | || | ||| ||||||||||||||||||
Sbjct 993 TGTCTGTCGCATGTTTCTTTACCA--CCGGA-GTCAGACCGGATCCTAGAGTGTACGGAC 1049
Query 1011 CCATTAAAGAGCTTGTGTCCGAAGAAAATCCTCCAAAGTACAGAGAGACCACCATCAGAG 1070
| |||| |||||||||||| |||||||| |||||||||||||||||||||||||| ||||
Sbjct 1050 CGATTAGAGAGCTTGTGTCTGAAGAAAACCCTCCAAAGTACAGAGAGACCACCATTAGAG 1109
Query 1071 ATTACGCTACTTACTTCAATGGCAAAGGACTTGG-CGGGACCTCTGCTTTGCTGGATTTT 1129
| ||||||||||||||||||| ||||||||| || |||||||||||||||||| |||||
Sbjct 1110 AGTACGCTACTTACTTCAATGCCAAAGGACT-GGACGGGACCTCTGCTTTGCTCCATTTT 1168
Query 1130 AAAGTATGAATCATGCCGAGCTACTACTT-TCTCACAGATATACGACATGACATTATATG 1188
|||||||||| |||| |||||||||| || ||||||| |||||||||||||| | |||||
Sbjct 1169 AAAGTATGAAACATGGCGAGCTACTA-TTGTCTCACATATATACGACATGAC-T-ATATG 1225
Query 1189 TAA 1191
|||
Sbjct 1226 TAA 1228
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51694675452
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5