BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G06650.2
Length=1360
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470684 jgi|Araly1|470684|fgenesh2_kg.1__638__AT1G06650.2 1906 0.0
Ahg910348 jgi|Araly1|910348|Al_scaffold_0001_602 1338 0.0
Ahg470414 jgi|Araly1|470414|fgenesh2_kg.1__368__AT1G04380.1 235 6e-61
> Ahg470684 jgi|Araly1|470684|fgenesh2_kg.1__638__AT1G06650.2
Length=1339
Score = 1906 bits (1032), Expect = 0.0
Identities = 1247/1350 (92%), Gaps = 18/1350 (1%)
Strand=Plus/Plus
Query 1 TTAAGAAAAACGTTTCATTCTTG-TTTTATGTGTGATTGTTGTTCTGTTTTTGATTTGAG 59
|||||||||| |||||||||||| ||||||||||||||||||||||| ||| || |||
Sbjct 1 TTAAGAAAAATGTTTCATTCTTGTTTTTATGTGTGATTGTTGTTCTG--TTT--TTCGAG 56
Query 60 AAACAAAAACGATGGAGATGATGAAGATTGATCCTTTATTCGATCGTGCCAGTGAGCTTA 119
|||| ||||| ||||||| || |||||||| | ||| ||||||||||||||||||||| |
Sbjct 57 AAACTAAAACTATGGAGACGACGAAGATTGCTTCTTCATTCGATCGTGCCAGTGAGCTCA 116
Query 120 AAGCTTTCGATGAAACGAAAACGGGTGTGAAAGGACTCGTCGACTCCGGAGTTTCACAAG 179
||||||| ||||| ||||||| |||||||||||||||||| ||| | ||||||| ||||
Sbjct 117 AAGCTTTTGATGAGACGAAAATGGGTGTGAAAGGACTCGTTGACGCAGGAGTTTTACAAA 176
Query 180 TTCCACGCATCTTTCATCATCCAACTGTCAAATTATCAACCCCAAAACCACTTCCCTCGG 239
||||||||||||||||||||||| || |||||||||||| ||| ||||||||| ||| |
Sbjct 177 TTCCACGCATCTTTCATCATCCATCTATCAAATTATCAAACCCTAAACCACTTTTCTCAG 236
Query 240 ACCTGCTACATCTCAAGACGATCCCAACGATCGATCTCGGAGGACGGGA-C-TTCCAGGA 297
|| |||||||||||||||||||||||||||| ||||| |||||| ||| | || ||||
Sbjct 237 ACTTGCTACATCTCAAGACGATCCCAACGATTGATCTAGGAGGA-AGGATCGTT-GAGGA 294
Query 298 CGCGATTAAGCGCAATAACGCGATTGAAGAGATTAAAGAAGCAGCAGCGAAGTGGGGTTT 357
||||| ||||| || ||||||||||||| ||| ||||||||||||| ||||||||||||
Sbjct 295 CGCGAGCAAGCGTAAGAACGCGATTGAAGGGATCAAAGAAGCAGCAGAGAAGTGGGGTTT 354
Query 358 CTTCCAGGTGATCAACCATGGAGTTTCGCTTGAACTTCTTGAGAAGATGAAAAAAGGAGT 417
||||||||||||||||||||||||||||||||| |||||||||||||||||| | |||||
Sbjct 355 CTTCCAGGTGATCAACCATGGAGTTTCGCTTGATCTTCTTGAGAAGATGAAAGATGGAGT 414
Query 418 TCGTGACTTCCACGAGCAATCACAAGAAGTGAGGAAAGAATTCTACAGTCGCGATTTCAG 477
|||||| || ||||||||||| | |||||||||||||||||||| ||||||||||||||
Sbjct 415 TCGTGATTTTCACGAGCAATCCCCTGAAGTGAGGAAAGAATTCTATAGTCGCGATTTCAG 474
Query 478 CAGAAGGTTTCTGTATTTAAGTAATTTCGATCTCTTTAGTTCTCCAGCAGCAAATTGGAG 537
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 475 CAGAAGGTTTCTGTATTTAAGTAATTTCGATCTCTTCAGTTCTCCAGCTGCAAATTGGAG 534
Query 538 AGACACTTTCTCTTGTACCATGGCTCCAGATACTCCAAAACCACAGGATCTTCCGGAGAT 597
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 535 AGACACTTTCTCTTGTACTATGGCTCCAGATACTCCAAAACCACAGGATCTTCCGGAGAT 594
Query 598 TTGTAGGGATATTATGATGGAATATTCAAAGCAAGTGATGAATTTGGGTAAATTTCTCTT 657
|||||||||| ||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct 595 TTGTAGGGATGTTATGATGGAATACTCAAAGCAAGTGATGATTTTGGGTAAATTTCTCTT 654
Query 658 CGAGCTTTTATCAGAAGCTCTAGGGTTGGAACCTAATCACCTCAATGACATGGATTGCTC 717
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 655 TGAGCTTTTATCAGAAGCTCTAGGGTTGGAACCTAATCACCTCAATGACATAGATTGCTC 714
Query 718 TAAGGGTTTGCTCATGCTCTCCCACTACTACCCACCGTGTCCAGAGCCTGACCTAACTTT 777
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 715 CAAGGGTTTGCTCATGCTCTCCCATTACTACCCACCGTGTCCAGAGCCTGACCTAACTTT 774
Query 778 AGGCACAAGTCAGCACTCCGACAACTCTTTTCTCACTGTCCTTCTTCCCGATCAGATCGA 837
||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||
Sbjct 775 AGGCACAAGTCAGCACTCCGACAACTCTTTTCTTACCGTCCTTCTCCCCGATCAGATCGA 834
Query 838 AGGGCTTCAGGTTCGTCGTGAAGGGCACTGGTTCGATGTTCCTCATGTTTCCGGCGCTCT 897
|||||||||||||||||| || ||| ||||||||||||||||||||||| ||||||||||
Sbjct 835 AGGGCTTCAGGTTCGTCGCGATGGGTACTGGTTCGATGTTCCTCATGTTCCCGGCGCTCT 894
Query 898 CATCATCAACATCGGAGATCTTTTACAGCTTATAACAAACGACAAATTCATCAGTTTGGA 957
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 895 AATCATCAACATTGGAGATCTTTTACAGCTTATAACAAACGACAAATTCATCAGTTTGGA 954
Query 958 GCACAGAGTATTGGCGAACAGAGCAACAAGAGCTCGAGTGTCTGTCGCATGTTTCTTTAC 1017
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 955 GCATAGAGTATTGGCGAACAGAGCGACAAGAGCTCGAGTGTCTGTCGCATGTTTCTTTAC 1014
Query 1018 CACTGGAGTAAGACCGAATCCTAGAATGTACGGACCGATTAGAGAGCTTGTGTCTGAAGA 1077
||| ||||| |||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1015 CACCGGAGTCAGACCGGATCCTAGAGTGTACGGACCGATTAGAGAGCTTGTGTCTGAAGA 1074
Query 1078 AAATCCTCCAAAGTACAGAGAGACCACAATTAAAGACTACGCTACTTACTTCAATGCCAA 1137
||| ||||||||||||||||||||||| |||| ||| |||||||||||||||||||||||
Sbjct 1075 AAACCCTCCAAAGTACAGAGAGACCACCATTAGAGAGTACGCTACTTACTTCAATGCCAA 1134
Query 1138 AGGACTTGACGGGACCTCTGCTTTGCTCCATTTTAA-GATATGAAACATGGTGAGCTACT 1196
|||||| ||||||||||||||||||||||||||||| | |||||||||||| ||||||||
Sbjct 1135 AGGACTGGACGGGACCTCTGCTTTGCTCCATTTTAAAG-TATGAAACATGGCGAGCTACT 1193
Query 1197 ACTGTCTCACACATATACGACATGACAATATATGTAATAATTCATTTGCAGATTAAAATT 1256
| ||||||||| |||||||||||||| ||||||||||||| |||||||||||||| |||
Sbjct 1194 ATTGTCTCACATATATACGACATGAC--TATATGTAATAATGCATTTGCAGATTAATATT 1251
Query 1257 ACTTCAGAAAA-GATCAAAAGAGTGC-TGGTGAAGAA-AATTCTCAAGAGGTTCATAAAC 1313
||||||||||| ||||||||||||| ||||||| || |||||||||||| ||||||||
Sbjct 1252 ACTTCAGAAAAAGATCAAAAGAGTGAATGGTGAA-AAGAATTCTCAAGAGCTTCATAAA- 1309
Query 1314 ATATCACTGTTGATACTTTATTTTTTAATA 1343
| |||||||||||||||||||| |||||||
Sbjct 1310 ACATCACTGTTGATACTTTATTCTTTAATA 1339
> Ahg910348 jgi|Araly1|910348|Al_scaffold_0001_602
Length=1107
Score = 1338 bits (724), Expect = 0.0
Identities = 994/1122 (89%), Gaps = 27/1122 (2%)
Strand=Plus/Plus
Query 71 ATGGAGATGATGAAGATTGATCCTTTATTCGATCGTGCCAGTGAGCTTAAAGCTTTCGAT 130
||||||| || |||||||| ||| ||| |||||||||||||||||||||||||| |||
Sbjct 1 ATGGAGACGAAGAAGATTG---CTTCATTTGATCGTGCCAGTGAGCTTAAAGCTTTTGAT 57
Query 131 GA-AACGAAAACGGGTGTGAAAGGACTCGTCGACTCCGGAGTTTCACAAG-TTCCACGCA 188
|| | | || || ||||||||||||||||| ||| | ||| | |||| || |||||||||
Sbjct 58 GAGAGC-AAGACTGGTGTGAAAGGACTCGTTGACGCTGGAATCTCAC-AGATTCCACGCA 115
Query 189 TCTTTCATCATC-CAACTGTCAAATTATCA-ACCCCAAAACCACTTCCCTCGGACCTGCT 246
| |||||||| | || ||||| || || || | ||| ||||||||||||||||| ||||
Sbjct 116 TTTTTCATCA-CTCATCTGTCGAACTAGCAGA-CCCTAAACCACTTCCCTCGGAGTTGCT 173
Query 247 ACATCTCAAGACGATCCCAACGATCGATCTCGGAGGACGGGACTTCCAGGACGCGATTAA 306
|||||| |||||||||||||||||| ||||||||||||||| |||| |||||||||||||
Sbjct 174 ACATCTAAAGACGATCCCAACGATCAATCTCGGAGGACGGGTCTTCGAGGACGCGATTAA 233
Query 307 GCGCAATAACGCGATTGAAGAGATTAAAGAAGCAGCAGCGAAGTGGGGTTTCTTCCAGGT 366
|| ||| ||||||||||||| ||||| |||||| || |||||||||||||||||||| ||
Sbjct 234 GCACAAGAACGCGATTGAAGGGATTAGAGAAGCGGCTGCGAAGTGGGGTTTCTTCCAAGT 293
Query 367 GATCAACCATGGAGTTTCGCTTGAACTTCTTGAGAAGATGAAAAAAGGAGTTCGTGACTT 426
||| ||||||||||||||||| || |||||||||||||||||| | ||||||||||||||
Sbjct 294 GATTAACCATGGAGTTTCGCTCGATCTTCTTGAGAAGATGAAAGATGGAGTTCGTGACTT 353
Query 427 CCACGAGCAATCACAAGAAGTGAGGAAAGAATTCTACAGTCGCGATTTCAGCAGAAGGTT 486
|| |||||| | | ||||||||||||||||| || || |||||||||| ||||| |||
Sbjct 354 TCATGAGCAACCCCCTGAAGTGAGGAAAGAATTGTATAGCCGCGATTTCAACAGAAAGTT 413
Query 487 TCTGTATTTAAGTAATTTCGATCTCTTTAGTTCTCCAGCAGCAAATTGGAGAGACACTTT 546
| ||||||||||||| |||||||||| ||| ||||||| ||||||||||||||||| ||
Sbjct 414 TATGTATTTAAGTAACTTCGATCTCTACAGTGCTCCAGCTGCAAATTGGAGAGACACATT 473
Query 547 CTCTTG-TACCATGGCTCCAGATACTCCAAAACCACAGGATCTTCCGGAGATTTGTAGGG 605
|| ||| || ||||||||||||| ||||||||||| ||||||| || |||||||||||||
Sbjct 474 CTATTGTTA-CATGGCTCCAGATCCTCCAAAACCAGAGGATCTGCCAGAGATTTGTAGGG 532
Query 606 ATATTATGATGGAATATTCAAAGCAAGTGATGAATTTGGGTAAATTTCTCTTCGAGCTTT 665
|| ||||||||||||| |||||||||||||||| ||||||| |||||||||| |||||||
Sbjct 533 ATGTTATGATGGAATACTCAAAGCAAGTGATGATTTTGGGTGAATTTCTCTTTGAGCTTT 592
Query 666 TATCAGAAGCTCTAGGGTTGGAA-CCTAATCACCTCAATGACATGGATTGCTCT-AAGGG 723
| ||||||||||||||| | ||| |||||||||||||| |||||||||||| || |||||
Sbjct 593 TGTCAGAAGCTCTAGGGCT-GAACCCTAATCACCTCAAGGACATGGATTGC-CTAAAGGG 650
Query 724 TTTGCTCATGCTCTCCCACTACTACCCACCGTGTCCAGAGCCTGACCTAACTTTAGGCAC 783
||||| |||||| | ||| |||| |||||||||||||||||||||||||||||| |||||
Sbjct 651 TTTGCGCATGCTTTGCCATTACTTCCCACCGTGTCCAGAGCCTGACCTAACTTTTGGCAC 710
Query 784 AAGTCAGCACTCCGACAACTCTTTTCTCACTGTCCTTCTTCCCGATCAGATCGAAGGGCT 843
||||||||||||||||| ||||||||| || |||| ||||| |||||||||||||||||
Sbjct 711 AAGTCAGCACTCCGACAGCTCTTTTCTTACCATCCTCCTTCCAGATCAGATCGAAGGGCT 770
Query 844 TCAGGTTCGTCGTGAAGGGCACTGGTTCGATGTTCCTCATGTTTCC-GGCGCTCTCATCA 902
|||||||| |||||||||| ||||||||||||||||||||| |||| |||||||||||||
Sbjct 771 TCAGGTTCTTCGTGAAGGGTACTGGTTCGATGTTCCTCATG-TTCCAGGCGCTCTCATCA 829
Query 903 TCAACATCGGAGATCTTTTACAGCTTATAACAAACGACAAATTCATCAGTTTGGAGCA-C 961
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 830 TCAACATCGGAGATCTTTTACAGCTTATAACAAACGACAAATTCATCAGTTTGGGGCATC 889
Query 962 AGAGTATTGGCGAACAGAGCAACAAGAGCTCGAGTGTCTGTCGCATGTTTCTTTACCACT 1021
||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||
Sbjct 890 -GAGTATTGGCGAACAGAGCCACAAGAGCTCGAGTCTCTGTCGCATGTTTCTTCACCACC 948
Query 1022 GGA-GTAAGACCGAATCCTAGAATGTACGGACCGATTAGAGAGCTTGTGTCTGAAGAAAA 1080
| |||| ||| ||||||||| | || ||||| |||| |||||||||||||||||||||
Sbjct 949 C-ACGTAAAACCCAATCCTAGAGTATATGGACCCATTAAAGAGCTTGTGTCTGAAGAAAA 1007
Query 1081 TCCTCCAAAGTACAGAGAGACCACAATTA-AAGACTACGCTACTTACTTCAATGCCAAAG 1139
||||||||||||||||||||||| |||| || | ||||||||||||||||||| |||||
Sbjct 1008 CCCTCCAAAGTACAGAGAGACCACCATTACAA-ATTACGCTACTTACTTCAATGGCAAAG 1066
Query 1140 GACTTGACGGGACCTCTGCTTTGCTCCATTTTAA-GATATGA 1180
|||||| ||| ||||||||||||||||||||||| | |||||
Sbjct 1067 GACTTGGCGGAACCTCTGCTTTGCTCCATTTTAAAG-TATGA 1107
> Ahg470414 jgi|Araly1|470414|fgenesh2_kg.1__368__AT1G04380.1
Length=1241
Score = 235 bits (127), Expect = 6e-61
Identities = 482/647 (74%), Gaps = 50/647 (8%)
Strand=Plus/Plus
Query 327 AGATTAAAGAAGCAGCAGCGAAGTGGGGTTTCTTCCAGGTGATCAACCATGGAGTTTCGC 386
|||| ||||| || |||| ||||||||| |||||||||||||||||||||| | ||| |
Sbjct 211 AGATCAAAGACGCTGCAGAGAAGTGGGGAATCTTCCAGGTGATCAACCATGGTG-TTC-C 268
Query 387 TTGAA--CTTCTTG-AGAAGATGAAAAAAGGAGTTCGTGA-CTTCCACGA-GCA-ATCAC 440
|| || |||||| || |||| |||| |||||| || | || || || | | ||| |
Sbjct 269 TTCAAGTGTTCTTGAAG-AGATTCAAAATGGAGTT-GTTAGGTTTCATGAGGAAGATC-C 325
Query 441 AAGAAGTGAGGAAAGAATT-CTACAGTCGC--GATTTCAGC-AGAAGGTTTCTGTATTTA 496
|| || | |||| || || | |||| || |||| | | || ||| | || |
Sbjct 326 -TGAGGTTAAGAAA-TCTTACTTC--TCGCTTGACTTCA-CAAAAACTTTTATCTA-CCA 379
Query 497 -AGTAATTTCGATCTCTTTAGTTC-TCCAGCAGCAAATTGGAGAGACACTTTCTCTTG-T 553
| ||||||||| || | ||||| | | || | || ||||||||| ||||| |||| |
Sbjct 380 CAATAATTTCGAACTGTACAGTTCGT-CTGCTGGTAACTGGAGAGACTCTTTCGCTTGTT 438
Query 554 ACCATGGCTCCAGATACTCCAAAACCACAGGATCTTCCGGAGATTTGTAGGGATATTATG 613
| ||||||||| ||| ||||||| || ||||||| || | | ||| |||||| ||||
Sbjct 439 A-CATGGCTCCTGATCCTCCAAACCCTGAGGATCTCCCAGTGGCTTGCAGGGATGCTATG 497
Query 614 AT-GGAATATTCAAAGCAAGTGATGAATTTGGGTAAATTT-CTCTTCGAGCTTTTATCAG 671
|| || ||| |||||||| |||||||| || ||| ||| ||||| || ||| | ||||
Sbjct 498 ATCGG-ATACTCAAAGCATGTGATGAACTTAGGT-GGTTTGCTCTTTGAACTTCTCTCAG 555
Query 672 AAGCTCTAGGGTTGGAAC-CT-AATCACCTCAATGA-CATGGATTGCTCT-AAGGGTTTG 727
||||||| |||| || | || | | ||| || || |||| |||| | |||||||||
Sbjct 556 AAGCTCT-TGGTTTGAGCTCTGAGGC-CCT-AAAGAGTATGGGTTGC-ATGAAGGGTTTG 611
Query 728 C-TCATGCTCTCCCACTACTACCCACCGTGTCCAGAGCCTGACCTAACTTTAGGCACAAG 786
| | ||| ||| ||| || |||||||| |||||||| |||||||||||||||||||||||
Sbjct 612 CAT-ATGATCTGCCATTATTACCCACCATGTCCAGAACCTGACCTAACTTTAGGCACAAG 670
Query 787 TCAGCACTCCGACAACTCTTTTCTCACTGTCCTTCTTCCCGATCAG-ATCGAAGGGCTTC 845
|||||||||||||||| | ||| |||| | ||||||| || || || | || ||||
Sbjct 671 TCAGCACTCCGACAACACCTTTATCACCATTCTTCTTCAGGA-CAACATTGGTGGTCTTC 729
Query 846 AGGTTCGTCGTGAAGGGCACT-GGTTCGATGT-TC-CTCATGTTTCCGGCGCTCTCATCA 902
| ||| || | ||| | | || ||||||| || | | | || |||| ||||| |||
Sbjct 730 AAATTCTTCATCAAGA-CTGTTGGGTCGATGTCTCGC-C-TCTTCCCGGGGCTCTTGTCA 786
Query 903 TCAACATCGGAGATCTT-TTACAGCTTATAACAAACGACAAATTCAT 948
||||||| |||||| || || ||||| || || |||||||| |||||
Sbjct 787 TCAACATAGGAGAT-TTCTTGCAGCTGATGACGAACGACAAGTTCAT 832
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50894094195
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5