BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G06660.1
Length=1694
Score E
Sequences producing significant alignments: (Bits) Value
Ahg919381 jgi|Araly1|919381|scaffold_100662.1 2285 0.0
> Ahg919381 jgi|Araly1|919381|scaffold_100662.1
Length=1503
Score = 2285 bits (1237), Expect = 0.0
Identities = 1423/1509 (94%), Gaps = 27/1509 (2%)
Strand=Plus/Plus
Query 77 GCTCTTGAGGAAATCAAATGATATGAGACGAC-TGTTGATGAACCGAAACCTAAGCCCCT 135
|||||||| ||||||||||||||||||||| | |||||||||| ||||||||||| ||||
Sbjct 1 GCTCTTGAAGAAATCAAATGATATGAGACG-CTTGTTGATGAATCGAAACCTAAGTCCCT 59
Query 136 TGTGCAGATCCGTGCTCAGATTCATCGATTTATCAGTCTGTAGAGCCATGGCTTGTTTTC 195
|||||||||||||||||||||||||||||||||| || ||||| ||||||||||| ||||
Sbjct 60 TGTGCAGATCCGTGCTCAGATTCATCGATTTATCTGTTTGTAGGGCCATGGCTTGCTTTC 119
Query 196 TCGACTGCTTCCGCGCCAGAGACAATCGCTCTACTAGTAATCTCGTCTCTCATTCTTCAC 255
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 120 TCGATTGCTTCCGCGCCAGAGACAATCGCTCTACTAGTAATCTCGTCTCTCACTCTTCAC 179
Query 256 TCGCCAATTCCAGAAAAGC-ACAGGACTCGCAGAATGATTTGTCAGCTTTGTTTCTTTCT 314
|||||||| |||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 180 TCGCCAATCCCAGAAAA-CGTCAGGACTCGCAGAATGATTTGTCAGCTTTGTTTCTTTCT 238
Query 315 GAAGAGAAATCAGCTTCTTCGCCTTGCCTTGACAAAGAAAGATTTGATTTAGATTCTATA 374
||||||||| ||||||| |||||||||| ||||||||||||||||||||| ||||||||
Sbjct 239 GAAGAGAAAGCAGCTTCCTCGCCTTGCCATGACAAAGAAAGATTTGATTTGGATTCTATT 298
Query 375 CATATTGACAAAGGCCTTAGGGATGAGGCGCGGTTTCTTAAAGCTTGTGGTACTATACCG 434
||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 299 CATATTGACAAAGGCCTAAGGGACGAGGCACGGTTTCTTAAAGCTTGTGGTACTATACCG 358
Query 435 GAGACACCTATTGAAATTAGGAAAGCATCCCAAAAACT---TAGTCCTCAACATTCTGGA 491
||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||
Sbjct 359 GAGACACCTATTGAAATTAGGAAAGGATCCCAAAAACTAAGTAGTCCTCAACATTCTGGA 418
Query 492 TCTTCCCATTTTCACTCATGGATTTCCAGTAGCTCCT-CTATGGGGTCTCGTTTGGCTGA 550
|||||||||||||||||||||||||||||||||| || | || ||||||| | |||||||
Sbjct 419 TCTTCCCATTTTCACTCATGGATTTCCAGTAGCT-CTGCGATTGGGTCTCATCTGGCTGA 477
Query 551 ATCCTCAACCCCCATGAAAGCTTGTGAAGAGGTGGGAAGACCATCATTTACTTCAGAGCA 610
|||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 478 ATCCACAACCCCCATGAAAGCTTGTGAAGAGGTGGGAAGACCATCATTCACTTCAGAGCA 537
Query 611 AACAGCTAGCAGTTGTGTAATCGATGTCCGGGACAATGCAAGGATCTCTTCTGCATCTAG 670
|||| |||||||||||||||| ||||| ||||||| |||||||||||||||||| |||||
Sbjct 538 AACAACTAGCAGTTGTGTAATTGATGTACGGGACAGTGCAAGGATCTCTTCTGCTTCTAG 597
Query 671 TGATGGTACTGAGGTAGAAAGCGTTGGCACTGCAATCAAGGGTGAGTTGGATAGAACGGC 730
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 598 TGATGGTACTGAAGTAGAAAGCGTTGGCACTGCAATCAAGGGTGAATTGGATAGAACTGC 657
Query 731 CAGGCCAACGTTCACAGCTGGAAAGAATAAGTCTGTCCGGTTTGAATGTGATCTTGATCA 790
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 CAGGCCAACGTTCACAGCTGGAAAGAATAAGTCTGTCCGGTTTGAATGTGATCTTGATCA 717
Query 791 ATCAAACTCTTCTAATTCTTCCGAGAATGGCAGTTCAAGAAAACCCGAGATGGGTGGCAA 850
|||| | ||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 718 ATCACATTCTTCTAATTCTTCCGAGAATAGCAGTTCAAGAAAACCCGAGATGGGTGGCAA 777
Query 851 AATTTGTTTTACAGTGAGCTCACCTAATCCAACCCCCTTGAAACTATCTGATGAGATGCA 910
||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 778 AATTTGTTTCACAGTGAGCTCGCCTAATCCAACCCCCTTGAAGCTATCTGATGAGATGCA 837
Query 911 AACTCCTGGAACCATATATCCTGCAAACATGGAATCAGGGGGAAGGGGGAGGCCTAGAAT 970
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 838 AACTCCTGGAACCATATATCCTGCAAACATGGAATCAGCAGGAAGGGGGAGGCCTAGAAT 897
Query 971 CAGGTCACAGTTTGTGCATTCAGTTTCCAATATAATGGAAAATGCATCCTTATATAAG-G 1029
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 898 CAGGTCGCAGTTTGTGCATTCAGTTTCCAATATAATGGAAAATGCATCCTTATATAAGTG 957
Query 1030 TCTACAAGGATTCACATGA-AGGCCTAGATTACGAAGAGCAGATAGAGGCTGAAACACCC 1088
||||| ||||||||||| || |||||||||||||||||||||||||| ||||||||||
Sbjct 958 -CTACATGGATTCACATGGGAG-CCTAGATTACGAAGAGCAGATAGAGGGTGAAACACCC 1015
Query 1089 TCTTCAGAAACTTATGGTGAAAAAGTGGAAGAAAGCTCAGATGAGAAACTGTCCAAGTTT 1148
||||||| ||||||||||||||| |||||||||||||| ||||||||| |||||||||||
Sbjct 1016 TCTTCAGCAACTTATGGTGAAAAGGTGGAAGAAAGCTCTGATGAGAAATTGTCCAAGTTT 1075
Query 1149 GAGGCAAGTTTTTCTCCTTGGCTAAACCAGATCAA---------T---GAAAACATTGCG 1196
||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 1076 GAGGCAAGTTTTTCTCCTTGGCTAAACCAGATCAACGAAGACAGTAACGAAAACATTGCG 1135
Query 1197 GCTTTAAATGAAAGGACACCAGGAGTCGGTGTCATAACCCCAGGTGACAGGCCTATCATT 1256
| |||||||||||||||||||||||| | || ||||||||||||||||||||||||||||
Sbjct 1136 GTTTTAAATGAAAGGACACCAGGAGTAGCTGCCATAACCCCAGGTGACAGGCCTATCATT 1195
Query 1257 GGATTGGTTGCTGCTCAGTGGATCGAGAATGAGCAAACTGAGATTTCACCCAAAATGTGG 1316
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 1196 GGATTGGTTGCTGCTCAGTGGATCGAGGATGAGCAAACTGAGATTTCACCCAAATTGTGG 1255
Query 1317 GATGGAAATGGGATCCCAAATTCGACAACCAAATACAAGGAGGATCAGAAAGTGAGTTGG 1376
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1256 GATGGAAATGGGATCCCAAATTCGACAACCAAATATAAGGAGGATCAGAAAGTGAGTTGG 1315
Query 1377 CATGCAACACCATTTGAAGTGAGACTGGAGAAGGCACTTTCTGAAGAAGGTGGTCAGAGT 1436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1316 CATGCAACACCATTTGAAGTGAGACTGGAGAAGGCACTTTCTGAAGAAGGTGGTCAGAGT 1375
Query 1437 TTATTCCCTCAAAGGAAACTTGAAGTGATGATGGAGGAGGTTGAAGGGGACACAGACATA 1496
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1376 TTATTCCCTCAAAGGAAACTTGAAGTGATGATGGAGGAGGTTGAAGGGGACACAGACATA 1435
Query 1497 TCGCAGCTGCACCATTCAGTGCAACCAAACTCGGTAGTTTCCTTCTGAAAGTC-TCCTTG 1555
||||||||||| ||||||||||||||||||||||||||||||||||||||||| || | |
Sbjct 1436 TCGCAGCTGCAGCATTCAGTGCAACCAAACTCGGTAGTTTCCTTCTGAAAGTCCTC-TCG 1494
Query 1556 GCTTTCGTA 1564
|||||||||
Sbjct 1495 GCTTTCGTA 1503
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63534528660
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5