BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G06680.1
Length=1139
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470689 jgi|Araly1|470689|fgenesh2_kg.1__643__AT1G06680.1 1768 0.0
> Ahg470689 jgi|Araly1|470689|fgenesh2_kg.1__643__AT1G06680.1
Length=1082
Score = 1768 bits (957), Expect = 0.0
Identities = 1024/1056 (97%), Gaps = 5/1056 (0%)
Strand=Plus/Plus
Query 3 ACTCTTGGTTTCACCTCCATACATTAACACA--CCAACAATCCTCAAAAAACACTTTCAT 60
||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1 ACTCTTGGTTTCATCTCCATACATTAACACACTCCAACAATCCTCAAAAAACACTTTCAT 60
Query 61 AACTTAATCACACACAAGgagagaagagagaaagagagaaagagagacagagaTAATGGC 120
| ||||||||||||||| | |||||||||||||||||| | | ||| ||||||||||||
Sbjct 61 AGCTTAATCACACACAA--AAAGAAGAGAGAAAGAGAGATATACAGAGAGAGATAATGGC 118
Query 121 GTACAGTGCGTGTTTCCTACACCAGAGCGCATTGGCTTCATCAGCCGCACGATCATCATC 180
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 119 GTACAGTGCGTGTTTCCTACACCAGAGCGCATTGGCTTCCTCAGCCGCACGATCATCATC 178
Query 181 TTCCTCCTCATCCCAGCGTCACGTGTCGCTCTCCAAACCTGTTCAGATCATCTGTAAAGC 240
||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||
Sbjct 179 TTCCTCCTCATCCCAGCGTCACGTGTCACTCTCCAAACCTGTTCAGATTATGTGTAAAGC 238
Query 241 TCAACAGTCTCATGAAGACGATAACTCCGCCGTCTCCCGCCGTCTTGCTCTCACTCTCCT 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 TCAACAGTCTCATGAAGACGATAACTCCGCCGTCTCCCGCCGTCTTGCTCTCACTCTCCT 298
Query 301 CGTCGGCGCCGCTGCTGTTGGTTCCAAAGTATCTCCTGCTGATGCCGCCTACGGTGAAGC 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 CGTCGGCGCCGCTGCTGTTGGTTCCAAAGTATCTCCTGCTGATGCCGCCTACGGTGAAGC 358
Query 361 TGCAAACGTGTTTGGGAAGCCAAAGACGAACACAGACTTCTTGCCATACAATGGAGATGG 420
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 359 TGCAAATGTGTTTGGGAAGCCAAAGACGAACACAGACTTCTTGCCATACAACGGAGATGG 418
Query 421 GTTCAAAGTGCAGGTTCCAGCAAAATGGAACCCAAGCAAAGAGATTGAGTATCCAGGACA 480
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 ATTCAAAGTGCAGGTGCCAGCAAAATGGAACCCAAGCAAAGAGATTGAGTATCCAGGACA 478
Query 481 AGTCCTTAGGTTCGAAGACAACTTCGATGCTACTAGCAATCTCAATGTCATGGTCACTCC 540
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 AGTCCTTAGGTACGAAGACAACTTCGATGCTACTAGCAATCTCAATGTCATGGTCACTCC 538
Query 541 TACCGACAAGAAGTCCATCACTGATTACGGTTCTCCCGAAGAGTTCCTCTCTCAGGTTAA 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 TACCGACAAGAAGTCCATCACTGATTACGGTTCTCCCGAAGAGTTCCTCTCTCAGGTTAA 598
Query 601 TTACCTCCTAGGGAAACAAGCTTACTTCGGTGAGACTGCCTCTGAGGGAGGCTTTGACAA 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 TTACCTCCTAGGGAAACAAGCTTACTTCGGTGAGACTGCCTCTGAGGGAGGCTTTGACAA 658
Query 661 CAATGCAGTGGCAACAGCAAACATTCTGGAGTCATCATCTCAGGAAGTTGGTGGGAAACC 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 CAATGCAGTGGCAACAGCAAACATTCTGGAGTCATCATCTCAGGAAGTTGGTGGGAAACC 718
Query 721 CTACTATTACTTGTCTGTGTTGACAAGAACGGCTGATGGAGACGAAGGTGGGAAGCATCA 780
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 CTACTATTACCTGTCTGTGTTGACAAGAACGGCTGATGGAGACGAAGGTGGGAAGCATCA 778
Query 781 GCTGATCACAGCAACCGTGAATGGAGGGAAGCTTTACATCTGCAAAGCACAAGCTGGAGA 840
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 GCTGATCACAGCCACTGTGAATGGAGGGAAGCTTTACATCTGCAAAGCACAAGCTGGAGA 838
Query 841 CAAGAGGTGGTTCAAGGGAGCCAGGAAATTTGTCGAGAGCGCAGCCACTTCTTTCAGTGT 900
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 839 CAAGAGGTGGTTCAAGGGAGCTAGGAAATTTGTCGAGAGTGCAGCCACTTCTTTCAGTGT 898
Query 901 TGCTTGAGTGAAAGCAACACAACGTAACAATGCTCTGCTTGCTTTCTTCATTTGTCTCTT 960
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 899 TGCTTGAGTGAAAGCAACACAACATAACAATGCTCTGCTTGCTTTCTTCATTTGTCTCTT 958
Query 961 GTAAAAAATGGAAAATGAAACTGAGCTTTTGAGAACTATCAAGATGATGTTACCTTTTCG 1020
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 959 GTAAAAAATGGAAA-TGAAACTGAGCTTTTGAGAACTATCAAGATGATGTCACCTTTGCG 1017
Query 1021 GCATCACTTGTGTACCTATGATAACAGACTCGTTTT 1056
| |||||||||||||| ||||||||||||||||||
Sbjct 1018 GTTTCACTTGTGTACCTGTGATAACAGACTCGTTTT 1053
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42468929538
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5