BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G06700.1
Length=1535
Score E
Sequences producing significant alignments: (Bits) Value
Ahg919385 jgi|Araly1|919385|scaffold_100666.1 1884 0.0
Ahg933581 jgi|Araly1|933581|scaffold_401569.1 1136 0.0
Ahg900854 jgi|Araly1|900854|Al_scaffold_0004_1504 944 0.0
> Ahg919385 jgi|Araly1|919385|scaffold_100666.1
Length=1126
Score = 1884 bits (1020), Expect = 0.0
Identities = 1092/1127 (97%), Gaps = 3/1127 (0%)
Strand=Plus/Plus
Query 163 TATTGAACAAGTAAACAAGGATGCGTAAGTGGATCTGTTGTACATGTCAAATAGAAGACT 222
||||||| |||| |||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 1 TATTGAAGAAGTGAACAAGGATGCGCAAGTGGATCTGTTGTACATGTCAGATAGAAGACT 60
Query 223 CAAATGAAGAGCAACAACTGAAAAGTTCACAGCAGCAATCTGATGCAAATCATAAGAATT 282
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 61 CAAATGAAGAGCAACAACTGAAAAGTTCGCAGCAGCAATCTGATGCAAATCATAAGAATC 120
Query 283 CAAAACCAGCACCTGTTGCAAAACAT-GAGGTTAAGAAGGAAGCTCTTCCCATCGAGGTC 341
|||||||||||||||||||||||| | ||| | ||||||||||||||||| |||||||||
Sbjct 121 CAAAACCAGCACCTGTTGCAAAAC-TCGAGATGAAGAAGGAAGCTCTTCCAATCGAGGTC 179
Query 342 CCTCCCTTGTCTTTGGATGAGGTCAAGGAAAAGACTGAAAATTTTGGATCCAAGGCACTG 401
||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||
Sbjct 180 CCTCCCTTGTCTTTGGATGAGGTGAAGGAAAAGACTGAAAATTTCGGATCGAAGGCACTG 239
Query 402 ATTGGTGAAGGGTCTTATGGGAGAGTATATTATGCGACACTAAATGATGGTGTGGCGGTT 461
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 240 ATTGGTGAAGGGTCTTACGGGAGAGTATATTATGCGACACTAAATGATGGTGTAGCGGTT 299
Query 462 GCTCTGAAGAAACTTGATGTCGCACCTGAAGCTGAAACAGATACCGAATTCTTGAGTCAG 521
||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct 300 GCTCTGAAGAAACTTGATGTCGCCCCTGAAGCTGAAACAGATGCCGAATTCTTGAGTCAG 359
Query 522 GTTTCCATGGTCTCTAGGCTGAAGCATGAAAATCTCATTCAATTGCTTGGTTTTTGTGTT 581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 GTTTCCATGGTCTCTAGGCTGAAGCATGAAAATCTCATTCAATTGCTTGGTTTTTGTGTT 419
Query 582 GATGGAAACCTCCGCGTCCTTGCATATGAGTTTGCAACAATGGGATCGTTGCATGACATC 641
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 420 GATGGAAACCTACGCGTCCTTGCATATGAGTTTGCAACAATGGGGTCGTTGCATGACATC 479
Query 642 TTGCATGGTAGGAAGGGAGTTCAAGGAGCACAACCAGGTCCAACACTTGACTGGATAACG 701
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 480 TTGCATGGTAGGAAGGGAGTTCAAGGGGCACAGCCAGGTCCAACACTTGACTGGATAACG 539
Query 702 AGGGTGAAGATAGCGGTTGAGGCAGCTAGGGGTTTGGAATACCTCCATGAGAAGTCTCAG 761
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 540 AGGGTGAAGATAGCGGTTGAGGCAGCTAGGGGTTTGGAATACCTTCATGAGAAGTCTCAG 599
Query 762 CCTCCTGTAATCCATAGGGACATAAGATCTAGCAATGTCCTTCTTTTTGAAGACTACAAA 821
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 CCTCCTGTAATCCATAGAGACATAAGATCTAGCAATGTCCTTCTTTTTGAAGACTACAAA 659
Query 822 GCAAAGATTGCTGATTTCAATCTCTCGAATCAAGCACCTGATAATGCTGCCCGTCTTCAC 881
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 GCAAAGATTGCTGATTTCAATCTCTCGAATCAAGCACCTGATAATGCTGCCCGTCTTCAC 719
Query 882 TCAACAAGAGTCTTGGGGACTTTTGGTTATCATGCTCCAGAATATGCAATGACTGGACAG 941
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 720 TCAACAAGAGTCTTGGGGACTTTTGGTTATCATGCTCCGGAATATGCAATGACTGGACAG 779
Query 942 TTAACTCAGAAGAGTGATGTGTACAGCTTTGGTGTTGTACTTCTAGAACTTCTTACAGGG 1001
|| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 780 TTGACTCAGAAGAGTGATGTGTACAGCTTTGGGGTTGTTCTTCTAGAACTTCTTACAGGG 839
Query 1002 AGGAAACCGGTGGATCATACCATGCCTAGAGGTCAACAGAGTCTTGTAACCTGGGCGACA 1061
|||||||| |||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 840 AGGAAACCAGTGGATCATACCATGCCTCGGGGTCAACAGAGTCTTGTAACCTGGGCGACA 899
Query 1062 CCAAGACTCAGTGAAGATAAAGTGAAACAGTGCATTGATCCAAAGCTAAAAGCCGATTAC 1121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 CCAAGACTCAGTGAAGATAAAGTGAAACAGTGCATTGATCCAAAGCTAAAAGCCGATTAC 959
Query 1122 CCTCCAAAAGCAGTTGCTAAGCTAGCAGCGGTGGCAGCATTGTGTGTGCAATACGAAGCT 1181
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 960 CCTCCAAAAGCAGTTGCTAAGCTAGCAGCAGTGGCAGCATTGTGTGTGCAATACGAAGCT 1019
Query 1182 GAGTTTAGACCAAATATGAGCATAGTTGTGAAGGCGCTACAGCCTCTCCTGAAACCTCCA 1241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 GAGTTTAGACCAAATATGAGCATAGTTGTGAAGGCGCTACAGCCTCTCCTGAAACCTCCA 1079
Query 1242 GCAGCAGCTCCAGCACCAGAATCTTGAAACT-TTTAAATCttttttt 1287
|| |||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 1080 GCCGCAGCTCCAGCACCAGAATCTTGAAACTCTTTTAATCTTTTTTT 1126
> Ahg933581 jgi|Araly1|933581|scaffold_401569.1
Length=1136
Score = 1136 bits (615), Expect = 0.0
Identities = 913/1057 (86%), Gaps = 20/1057 (2%)
Strand=Plus/Plus
Query 222 TCAAATGAAGAGCAACAACTGAAAAGTTCACAGCAGCAATCTGATGCAAATCATAAGAAT 281
|||||||| ||| || ||||||||| || |||||||||||| |||||||| |||||
Sbjct 69 TCAAATGAGGAGGTGCATCTGAAAAGTCCATGGCAGCAATCTGACGCAAATCAAAAGAA- 127
Query 282 TC-AAAACCAGCACCTGTTGCAAAACATGAGGTTAAGAAGGAAGCTCTTCCCATCGAGGT 340
|| ||||||| || |||||||||||| ||||| |||||||||||||||||||||| ||
Sbjct 128 TCAAAAACCACCAGCTGTTGCAAAACCTGAGGCGCAGAAGGAAGCTCTTCCCATCGAAGT 187
Query 341 CCCTCCCTTGTCT-TTGGATGAGGTCAAGGAAAAGACTGAAAATTTTGGATCCAAGGCAC 399
|||||||||||| || || ||||| || ||||||||||| ||||||||||| ||| | |
Sbjct 188 TCCTCCCTTGTCTGTT-GACGAGGTTAAAGAAAAGACTGACAATTTTGGATCAAAGTCTC 246
Query 400 TGATTGGTGAAGGG-TCTTATGGGAGAGTATATTATGCGACACTAAATGATGGTG-TGGC 457
||||||||| |||| |||||||| || ||||||||||| || ||||||||||| | ||
Sbjct 247 TGATTGGTG-AGGGATCTTATGGAAGGGTATATTATGCAACTCTAAATGATGG-GAAAGC 304
Query 458 GGTTGCTCTGAAGAAACTTGATGTCGCACCTGAAGCTGAAACAGATACCGAATTCTTGAG 517
|| ||| |||||||||| ||||| || ||||||||||||||| || | || ||||||||
Sbjct 305 AGTGGCTTTGAAGAAACTCGATGTTGCCCCTGAAGCTGAAACAAATTCTGAGTTCTTGAG 364
Query 518 TCAGGTTTCCATGGTCTCTAGGCTGAAGCATGAAAATCTCATTCAATTGCTTGGTTTTTG 577
||||||||||||||| || || |||||||||| |||||||||||| || |||||| |||
Sbjct 365 TCAGGTTTCCATGGTTTCAAGATTGAAGCATGAGAATCTCATTCAACTGGTTGGTTATTG 424
Query 578 TGTTGATGGAAACCTCCGCGTCCTTGCATATGAGTTTGCAACAATGGGATCGTTGCATGA 637
|||||||| |||||| || || ||||| ||||||||||||||||||||||| |||| ||
Sbjct 425 TGTTGATGAAAACCTTCGTGTTCTTGCTTATGAGTTTGCAACAATGGGATCACTGCACGA 484
Query 638 CA-TCTTGCATGGTAGGAAGGGAGTTCAAGGAGCACAACCAGGTCCAACACTTGACTGGA 696
|| || | ||||||||||||||||||||||| ||||| || ||||||||||||||||||
Sbjct 485 CATTC-TCCATGGTAGGAAGGGAGTTCAAGGTGCACAGCCTGGTCCAACACTTGACTGGT 543
Query 697 TAACGAGGGTGAAGATAGCGGTTGAGGCAGCTAGGGGTTTGGAATACCTCCATGAGAA-G 755
|||| |||||||||||||| |||||||||||||||||||| |||||||| |||||||| |
Sbjct 544 TAACAAGGGTGAAGATAGCAGTTGAGGCAGCTAGGGGTTTAGAATACCTTCATGAGAAGG 603
Query 756 TCTCAGCCTCCTGTAATCCATAGGGACATAAGATCTAGCAATGTCCTTCTTTTTGAAGAC 815
| |||||||||||| || ||||| |||||||||||||||||||| |||||||||||||||
Sbjct 604 T-TCAGCCTCCTGTGATACATAGAGACATAAGATCTAGCAATGTGCTTCTTTTTGAAGAC 662
Query 816 TA-CAAAGC-AAAGATTGCTGATTTCAATCTCTCGAATCAAGCACCTGATAATGCTGCCC 873
|| | |||| |||| ||||||||||||||||||| |||||||| |||||||||||||| |
Sbjct 663 TATC-AAGCAAAAG-TTGCTGATTTCAATCTCTCAAATCAAGCTCCTGATAATGCTGCTC 720
Query 874 GTCTTCACTCAACAAGAGTCTTGGGGACTTTTGGTTATCATGCTCCAGAATATGCAATGA 933
|||||||||| |||||||||||||| || ||||| ||||| |||||||||||||| ||||
Sbjct 721 GTCTTCACTCTACAAGAGTCTTGGGCACCTTTGGCTATCACGCTCCAGAATATGCTATGA 780
Query 934 CTGGACAGTTAACTCAGAAGAGTGATGTGTACAGCTTTGGTGTTGTACTTCTAGAACTTC 993
| |||||||| || ||||||||||| ||||| |||||||| ||||| |||||||| |||
Sbjct 781 CCGGACAGTTGACGCAGAAGAGTGACGTGTATAGCTTTGGGGTTGTTCTTCTAGAGCTT- 839
Query 994 TT-ACAGGGAGGAAACCGGTGGATCATACCATGCCTA-GAGGTCAACAGAGTCTTGTAAC 1051
|| |||||||||||||| || ||||| || ||||| | | || ||||| |||||||||||
Sbjct 840 TTGACAGGGAGGAAACCTGTAGATCACACAATGCC-ACGTGGCCAACAAAGTCTTGTAAC 898
Query 1052 CTGGGCGACACCAAGACTCAGTGAAGATAAAGTGAAACAGTGCATTGATCCAAAGCTAAA 1111
|||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 899 CTGGGCTACACCAAGACTCAGTGAAGATAAAGTGAAGCAGTGTGTTGATCCAAAGCTAAA 958
Query 1112 AGCCGATTACCCTCCAAAAGCAGTTGCTAAGCTAGCAGCGGTGGCAGCATTGTGTGTGCA 1171
|| || || ||||| ||| |||| |||||||||||||||||||||||||||||||| ||
Sbjct 959 AGGAGAATATCCTCCTAAATCAGTAGCTAAGCTAGCAGCGGTGGCAGCATTGTGTGTACA 1018
Query 1172 ATACGAAGCTGAGTTTAGACCAAATATGAGCATAGTTGTGAAGGCGCTACAGCCTCTCCT 1231
||||||| ||||||||||||| || ||||| |||||||| || || | ||||| || ||
Sbjct 1019 ATACGAATCTGAGTTTAGACCCAACATGAGTATAGTTGTAAAAGCTTTGCAGCCACTTCT 1078
Query 1232 GAAACCTCCAGCAGCAGCTCCAGCACCAGAATCTTGA 1268
||||| |||||| |||| |||| ||| ||||| |||
Sbjct 1079 CAAACCACCAGCACCAGCCCCAGTACCGGAATCCTGA 1115
> Ahg900854 jgi|Araly1|900854|Al_scaffold_0004_1504
Length=1068
Score = 944 bits (511), Expect = 0.0
Identities = 772/898 (86%), Gaps = 18/898 (2%)
Strand=Plus/Plus
Query 325 CTCTTCCCATCGAGGTCCCTCCCTTGTCT-TTGGATGAGGTCAAGGAAAAGACTGAAAAT 383
|||||||||| || || |||||||||||| || || ||||| || ||||||||||| |||
Sbjct 131 CTCTTCCCATTGAAGTTCCTCCCTTGTCTGTT-GACGAGGTTAAAGAAAAGACTGACAAT 189
Query 384 TTTGGATCCAAGGCACTGATTGGTGAAGGG-TCTTATGGGAGAGTATATTATGCGACACT 442
|||||||| ||| | |||||||||| |||| |||||||| || ||||| ||||| || ||
Sbjct 190 TTTGGATCAAAGTCTCTGATTGGTG-AGGGATCTTATGGAAGGGTATACTATGCAACTCT 248
Query 443 AAATGATGGTGTGGCGGTTGCTCTGAAGAAACTTGATGTCGCACCTGAAGCTGAAACAGA 502
||||||||| || |||||| |||||||||| ||||| || ||||||| ||||||| |
Sbjct 249 AAATGATGGAAAAGCAGTTGCTTTGAAGAAACTCGATGTTGCGCCTGAAGATGAAACAAA 308
Query 503 TACCGAATTCTTGAGTCAGGTTTCCATGGTCTCTAGGCTGAAGCATGAAAATCTCATTCA 562
|||| ||||| || |||||||||||||| || || || |||||||| |||||||||||
Sbjct 309 CGCCGAGTTCTTAAGCCAGGTTTCCATGGTATCAAGACTAAAGCATGAGAATCTCATTCA 368
Query 563 A-TTGCTTGGTTTTTGTGTTGATGGAAACCTCCGCGTCCTTGCATATGAGTTTGCAACAA 621
| | | |||||| ||||||||| | ||| || || || ||||| |||||||| ||||| |
Sbjct 369 ACTAG-TTGGTTATTGTGTTGACGAAAAACTACGTGTTCTTGCTTATGAGTTGGCAACGA 427
Query 622 TGGGATCGTTGCATGACATCTTGCATGGTAGGAAGGGAGTTCAAGGAGCACAACCAGGTC 681
||||||| ||||| ||||| || ||||||||||||||||||||||| |||||||||||||
Sbjct 428 TGGGATCATTGCACGACATTTTACATGGTAGGAAGGGAGTTCAAGGCGCACAACCAGGTC 487
Query 682 CAACACTTGACTGGATAACGAGGGTGAAGATAGCGGTTGAGGCAGCTAGGGGTTTGGAAT 741
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 488 CAACACTTGATTGGATAACGAGGGTGAAGATAGCGGTTGAGGCAGCTAGGGGTTTAGAAT 547
Query 742 ACCTCCATGAGAAG-TCTCAGCCTCCTGTAATCCATAGGGACATAAGATCTAGCAATGTC 800
|||| ||||||||| | ||| |||| |||||| ||||||||||||||||||||||||||
Sbjct 548 ACCTTCATGAGAAGGT-TCAACCTCATGTAATACATAGGGACATAAGATCTAGCAATGTG 606
Query 801 CTTCTTTTTGAAGACTACAAAGCAAAGATTGCTGATTTCAATCTCTCGAATCAAGCACCT 860
||||||||||||||||| |||||||| ||||||||||| ||||| || |||||||| |||
Sbjct 607 CTTCTTTTTGAAGACTATAAAGCAAAAATTGCTGATTTTAATCTTTCAAATCAAGCTCCT 666
Query 861 GATAATGCTGCCCGTCTTCACTCAACAAGAGTCTTGGGGACTTTTGGTTATCA-TGCTCC 919
||||||||||| |||||||| || |||||| ||||||| || ||||||||||| | ||||
Sbjct 667 GATAATGCTGCTCGTCTTCAATCTACAAGAATCTTGGGAACCTTTGGTTATCACT-CTCC 725
Query 920 AGAATATGCAATGACTGGACAGTTAACTCAGAAGAGTGATGTGTACAGCTTTGGTGTTGT 979
||||||||| ||||||||| |||| || || |||||||| || || || |||||||| ||
Sbjct 726 AGAATATGCTATGACTGGAGAGTTGACACATAAGAGTGACGTATATAGTTTTGGTGTAGT 785
Query 980 ACTTCTAGAACTTCTT-ACAGGGA-GGAAACCGGTGGATCATACCATGCCTA-GAGGTCA 1036
||||||||| || ||| || |||| ||||||| ||||||| ||| ||||| | | || ||
Sbjct 786 ACTTCTAGAGCT-CTTGAC-GGGAAGGAAACCTGTGGATCCTACAATGCC-ACGTGGCCA 842
Query 1037 ACAGAGTCTTGTAACCTGGGCGACACCAAGACTCAGTGAAGATAAAGT-GAAACAGTGCA 1095
||| ||||||||||| ||||| ||||||| ||| ||||||||| |||| || |||||
Sbjct 843 ACAAAGTCTTGTAACTTGGGCTACACCAAAACTTAGTGAAGATGAAGTAGAG-CAGTGTG 901
Query 1096 TTGATCCAAAGCTAAAAGCCGATTACCCTCCAAAAGCAGTTGCTAAGCTAGCAGCGGTGG 1155
|||||||||||||||||| || || ||||| ||| |||| |||||||||||||||||||
Sbjct 902 TTGATCCAAAGCTAAAAGGAGAATATCCTCCTAAATCAGTAGCTAAGCTAGCAGCGGTGG 961
Query 1156 CAGCATTGTGTGTGCAATACGAAGCTGAGTTTAGACCAAATATGAGCATAGTTGTGAA 1213
||||||||||||||||||| ||| |||||| ||||||||| ||||||| |||||||||
Sbjct 962 CAGCATTGTGTGTGCAATATGAATCTGAGTGTAGACCAAAAATGAGCACAGTTGTGAA 1019
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57478179705
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5