BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G06730.1
Length=1968
Score E
Sequences producing significant alignments: (Bits) Value
Ahg919388 jgi|Araly1|919388|scaffold_100669.1 2362 0.0
> Ahg919388 jgi|Araly1|919388|scaffold_100669.1
Length=1513
Score = 2362 bits (1279), Expect = 0.0
Identities = 1439/1515 (95%), Gaps = 16/1515 (1%)
Strand=Plus/Plus
Query 87 TTTCCTGGGTTTTTCTGAATGTATCACCACGCTTTTTCCCTAAAATTTCACTCCTTCTCT 146
||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 4 TTT-CTGGGTTTTTCTGAATGTATCACCACGCTTTTTCCCTAAAATTCCACTCCTTCTCT 62
Query 147 CCTCACTATGCGTTATCCCTCTCCAATTTCTCCACCCAAAGCCCTAAT-C-CT-CT-CC- 201
|||||||||||||||||||||||||||||||| ||||||||||||||| | || || ||
Sbjct 63 CCTCACTATGCGTTATCCCTCTCCAATTTCTCTACCCAAAGCCCTAATCCTCTCCTCCCT 122
Query 202 ----TCCCGCCATTCGCTAGAGTCCCTCATGTGACCAGCTCTGTTTGCCTCCGCTGCCGG 257
||||||||||||||||||| || |||||| ||||||| |||||||||||||||||
Sbjct 123 AATTTCCCGCCATTCGCTAGAGTTCCGAATGTGAGCAGCTCTCTTTGCCTCCGCTGCCGG 182
Query 258 AGCAGCGCCGCTGATGTATCTCCGGTTATATACGCCGATGGCTCCTCCTCCATCTGTTCT 317
|||||||||||||||||||||||||||| ||||||| ||||||||||||||||| | |||
Sbjct 183 AGCAGCGCCGCTGATGTATCTCCGGTTAGATACGCCAATGGCTCCTCCTCCATCGGCTCT 242
Query 318 TTCGGGGAAACTGGAGATGTCGCGGTGGTCGAGAAACCTATAGATGTCTCAACCTTGGGT 377
||||||| ||||||| | ||| ||||| |||||||||||| |||||| |||||||||||
Sbjct 243 CTCGGGGATACTGGAGGTATCGTGGTGGCCGAGAAACCTATCGATGTCGCAACCTTGGGT 302
Query 378 AATCTCTGCGTCGACATTGTTCTCAGTGTTCACGAATTGCCCCCTCCTTCTCGTGGAGAA 437
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 303 AATCTCTGCGTCGACATTGTTCTCAGTGTTCACGAATTGCCCCCTCCTTCTCGTGAAGAA 362
Query 438 CGCAAGGCCCTCATGGACGAACTCTCTATGTCTCCCCCAGATAAGAAATACTGGGAAGCA 497
||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 363 CGCAAGGCCCTCATGGACGAACTCTCTCTTTCTCCCCCAGATAAGAAATACTGGGAAGCA 422
Query 498 GGTGGCAACTGTAACATGGCTATAGCAGCTGCTAGATTGGGGCTTCATTGTGTTGCTATT 557
|||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct 423 GGTGGCAACTGTAACATGGCTATAGCTGCTGCTAGATTGGGGCTTCGTTGTGTTGCTATT 482
Query 558 GGTCACGTTGGGGATGAAATCTATGGTGAGTTTCTTCTTGATGTGCTTCATGAGGAAGGA 617
||||| || |||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 483 GGTCATGTGGGGGATGAAATCTACGGTGAGTTTCTTCTAGATGTGCTTCATGAGGAAGGA 542
Query 618 ATAGGTACGGTTGCATTGAATGGAGGAACAAATGAAAAAGATACCAGCTCATTCTGTGAA 677
|||||||||||||||||| || ||||||| |||| ||||||||||||||||||||||||
Sbjct 543 ATAGGTACGGTTGCATTGGATAGAGGAACGAATGCCAAAGATACCAGCTCATTCTGTGAA 602
Query 678 ACTCTCATTTGCTGGGTTCTTGTGGATCCTTTGCAGAGGCATGGGTTTTGCAGTCGAGCT 737
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 603 ACTCTCATTTGCTGGGTTCTTGTGGATCCTTTGCAGAGGCATGGGTTTTGCAGTCGAGCT 662
Query 738 GATTTCAAGGAGGAACCTGCTTTCAGTTGGATCACTGACCTATCTGATGAAGTAAAGATG 797
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 663 GATTTCAAGGAGGAACCTGCTTTCAGTTGGATCACTGACCTATCTGATGAAGTAAAGATG 722
Query 798 GCAATCAGACAGTCAAAAGTTCTTTTCTGCAATGGTTATGACTTTGACGATTTCAGCCCT 857
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 723 GCAATCAGACAGTCAAAAGTTCTTTTCTGCAATGGTTATGACTTTGACGATTTCAGCCCT 782
Query 858 AGTTTTATTATGTCAACGATAGATTACGCTGCCAAAGTTGGGACAGCTATCTTCTTCGAT 917
|||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 783 AGTTTTATAATGTCAACGATAGATTACGCTTCCAAAGTTGGGACAGCTATCTTCTTCGAT 842
Query 918 CCTGGACCACGGGGAAAGAGTCTGTCCAAGGGAACTCCTGATGAGCGTAGAGCACTTGCT 977
||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct 843 CCTGGACCACGGGGAAAGAGTCTTTCCAAGGGAACTCCTGATGAGCGTCGAGCACTTGCT 902
Query 978 CATTTCTTAAGAATGAGTGATGTTCTTCTTCTAACATCTGAGGAGGTGGAGGCTCTAACT 1037
|| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 903 CACTTCTTAAGAATGAGTGATGTTCTTCTTCTAACATCTGAGGAGGCGGAGGCTCTAACT 962
Query 1038 GGCATCAGGAACCCTGTTAAAGCAGGACAAGAAATTCTGAGGAACGGAAAGGGAACGAAA 1097
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 963 GGCATCAGGAACCCTGTAAAAGCAGGACAAGAAATTCTGAGGAATGGAAAGGGAACGAAA 1022
Query 1098 TGGGTGATTGTAAAGATGGGCCCAAAGGGTTCAATTCTAGTGACGAAATCTAGTGTCTCA 1157
||||||||||||||||||||| | ||||||||||||||||||||||| |||||||||||
Sbjct 1023 TGGGTGATTGTAAAGATGGGCGCGAAGGGTTCAATTCTAGTGACGAAGTCTAGTGTCTCG 1082
Query 1158 GTGGCACCTGCGTTTAAGGTGGAAGTGGTTGACACTGTTGGATGTGGAGACAGTTTTGTG 1217
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1083 GTGGCACCTGCGTTTAAGGTGGAAGTGGTTGACACTGTTGGATGTGGAGACAGTTTTGTG 1142
Query 1218 GCTGCAATTGCATTAGGTTATATACGCAACATGCCGCTTGTTAATACCTTAACAATTGCA 1277
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1143 GCTGCAATTGCATTAGGTTATATACGCAACATGCCGCTTGTTAATACGTTAACAATTGCA 1202
Query 1278 AATGCGGTTGGAGCAGCAACTGCAATGGGCTGTGGAGCAGGTAGAAATGTTGCAAAAAGG 1337
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 1203 AATGCGGTTGGAGCAGCAACTGCAATGGGTTGTGGAGCGGGTAGAAATGTTGCAAAAAGG 1262
Query 1338 CATCAGGTGGTGGATCTGATGAAGGCCTCGAAACTCAATGATGAAGAGAAGTTTTTCGAA 1397
||||| ||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||
Sbjct 1263 CATCAAGTGGTGGATCTGATGAAGGGCTCGAAACTCAATGACGAAGAGATGTTTTTCGAA 1322
Query 1398 CAACTCCTGGCTGAAAATTCAGAGTCATC-TAGAATCAATCTTCTTTCAAAAGGGATGAT 1456
||||| ||||||||||||||||| || || |||||||||||| |||||||||||||||||
Sbjct 1323 CAACTACTGGCTGAAAATTCAGAATC-TCCTAGAATCAATCTACTTTCAAAAGGGATGAT 1381
Query 1457 AAAGGATGGGAGGAGCAACAAGCAGCTGATAGAAACAATCTCAATGGAAAAAGTGGTTTC 1516
|||||||||||| ||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 1382 AAAGGATGGGAG---CAACAAGCAGCAGATAGAAACAATCTCTATGGAAAAAGTGGTTTC 1438
Query 1517 TGAATTGCTTGCAGAACTTGAACTTGGGAGGTGTTGTGTGAAGGCTTCATCTTGAATC-T 1575
||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || |
Sbjct 1439 TGAATTGCTTGCAGAGCTTGAACTTGGGAGGTGTTGTGTGAAGGCTTCATCTTGATTCAT 1498
Query 1576 TTGAAACAAACTCGC 1590
|||||||||| ||||
Sbjct 1499 TTGAAACAAAATCGC 1513
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73971255790
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5