BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G06750.2 Length=1917 Score E Sequences producing significant alignments: (Bits) Value Ahg470697 jgi|Araly1|470697|fgenesh2_kg.1__651__AT1G06750.1 2388 0.0 Ahg481980 jgi|Araly1|481980|fgenesh2_kg.4__1040__AT2G30630.1 1376 0.0 > Ahg470697 jgi|Araly1|470697|fgenesh2_kg.1__651__AT1G06750.1 Length=1482 Score = 2388 bits (1293), Expect = 0.0 Identities = 1425/1489 (96%), Gaps = 8/1489 (1%) Strand=Plus/Plus Query 275 ATGATAGCAGCCGCAGTGCATTACCGTCTGCGGAGGCTACGTGACACCAAAATCATCCCT 334 |||||||||||||||||||||||||| ||||||||| |||||||| |||||||||||||| Sbjct 1 ATGATAGCAGCCGCAGTGCATTACCGCCTGCGGAGGATACGTGACTCCAAAATCATCCCT 60 Query 335 CGTCTCAAATCATCTCACAAACACAAAGGCCATGAGAAACTCGAGAGATTCTCTCATTAC 394 ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 CGTCTCAGATTATCTCACAAACACAAAGGCCATGAGAAACTCGAGAGATTCTCTCATTAC 120 Query 395 GTCGCAAGGCAAATGGGATTCAAGGACAGAAGAGAGTGTCCAAATCTCTGCAAGTTAGCA 454 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 GTAGCAAGGCAAATGGGATTCAAGGACAGAAGAGAGTGTCCAAATCTCTGCAAGTTAGCA 180 Query 455 GCAGAATACATAAGTAAATCTGAATGTTGTGAAGAAGACATTTACAGCTTTTTCTCTGAA 514 |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 181 GCAGAATACATAAGCAAATCTGAATGTTGTGAAGAAGATATTTACAGCTTTTTCTCTGAA 240 Query 515 GAACCTGATGCTGATACCCTCTTCATTAAGCTTGTTGAGGAGTTTGAAAGATGCATTCTC 574 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 GAGCCTGATGCTGATACCCTCTTCATTAAGCTTGTTGAGGAGTTTGAAAGATGCATTCTC 300 Query 575 AGCTACTTTGCGTTTCACTGGAGCCACGCCGATCTCATGATTACTCAGGTACTGAGCGCT 634 ||||||||||||||||||||||||||||||||||||||||||| |||| || ||||||| Sbjct 301 AGCTACTTTGCGTTTCACTGGAGCCACGCCGATCTCATGATTAGTCAGATATTGAGCGCG 360 Query 635 GATGCTGAGCCAAAGAGGAAGCTGAAACAAATTGTGATGGCAGCTACAAGGGAGCTGAGG 694 |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| Sbjct 361 GATGCTGAGCCAAAGAGGAAGCTGAAGCAAATTGTGATGGCAGCTACAAGGGAGCAGAGG 420 Query 695 ATTAAGAGGGTGACTAAGAACTTAAAAGTGGCAAGAGTGTTCAACACTTTGGTAGAGGAA 754 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 ATTAAGAGGGTGACTAAGAACTTAAAAGTGGCAAGAGTGTTCAACACTTTGGTAGAGGAA 480 Query 755 ATGAGAGCAATGGGGCTCGCGTCTG-TGGATGACTCGCAGTGCACAGAAGTTATGGCACC 813 |||| |||||||||||||||||||| | |||||||||||||| ||||||||||||||||| Sbjct 481 ATGAAAGCAATGGGGCTCGCGTCTGCT-GATGACTCGCAGTGTACAGAAGTTATGGCACC 539 Query 814 AGTGGCTCACAAAGACAGAAGTCCAGTGCTACTCCTTATGGGTGGTGGGATGGGTGCAGG 873 |||||||||||||||| ||||||| || || ||||| ||||||||||||||||||||||| Sbjct 540 AGTGGCTCACAAAGACCGAAGTCCGGTTCTGCTCCTCATGGGTGGTGGGATGGGTGCAGG 599 Query 874 GAAAAGCACTGTGCTTAAGGACATACTCAAAGAAGCATTCTGGGCAGGAGCAGACTCTGT 933 ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 600 AAAAAGCACTGTTCTTAAGGACATACTCAAAGAAGCATTCTGGGCAGGAGCAGACTCTGT 659 Query 934 GGTGATTGAAGCTGATGCTTTCAAAGAGTCTGATGTCATTTACAGAGCCTTAAGCTCTCG 993 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 660 GGTGATTGAAGCTGATGCTTTCAAAGAATCTGATGTCATTTACAGAGCCTTAAGCTCTCG 719 Query 994 TGGCCATGTCGATATGATCCAGACAGCTGAATTGGTTCATCAGTCATCAACAGATGCAGC 1053 ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| Sbjct 720 TGGCCATGTCGATATGATCCAGACAGCTGAATTGGTTCACCAGTCATCTACAGATGCAGC 779 Query 1054 TTCATCCCTGCTAGTGACGGCTCTGAACGAAGGAAGGGATGTGATAATGGATGGGACACT 1113 ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| Sbjct 780 TTCATCCCTGCTAGTGACGGCTCTGAATGAAGGGAGGGATGTGATAATGGATGGGACACT 839 Query 1114 CTCTTGGGTACCTTTTGTGGTGCAGACAATAACAATGGCGAGGAACGTACACCGACACCA 1173 ||| |||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||| Sbjct 840 CTCGTGGGTACCTTTTGTGGTGCAGACAATAACAATGGCGAGAAACGTGCACCGTCACCA 899 Query 1174 TTACAGAATGGGAGCTGGATACAAGGTTGGTGATGATGGAGTTATAACAGAGAACTATTG 1233 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 900 TTACAGAATGGGAGCTGGATACAAGGTTGGTGATGATGGAGTTATCACAGAGAACTATTG 959 Query 1234 GGAACGAATTGGTGAAAGGCAACAGATTCAAGAGGATGGTCGTAGGAGAAAACCGTATAG 1293 |||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 960 GGAACGGATTGGTGAAAGGCAACAGCTTCAAGAGGATGGTCGTAGGAGAAAACCGTATAG 1019 Query 1294 AATAGAACTAGTTGGAGTTGTGTGCGATGCGTATTTAGCAGTTATAAGAGGCATTAGGAG 1353 ||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||| Sbjct 1020 AATAGAACTAGTTGGAGTTGTATGCGATGCATATTTAGCAGTAATAAGAGGCATTAGGAG 1079 Query 1354 AGCTATCATGTGCAGAAGAGCAGTTAGGGTGAGATCACAGCTGAGATCTCACAAACGGTT 1413 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1080 AGCCATCATGTGCAGAAGAGCAGTTAGGGTGAGATCACAGCTGAGATCTCACAAACGGTT 1139 Query 1414 TGCGGAAGCATTTCCTACATATTGCAGCCTTGTCGACAATGCTAGGCTCTACTGCACTAA 1473 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1140 TGCGGAAGCATTTCCTACATATTGCAGCCTTGTCGACAATGCTAGGCTCTACTGCACCAA 1199 Query 1474 CGCGCTGGAAGGCTCTCCAAAGCTGATAGGTTGGAAAGAAAAGGAAAAGACATTGCTAGT 1533 ||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1200 CGCACTGGAAGGCTCTCCAAAGCTGATAGGTTGGAAAGAAAAGGAAAAGACGTTGCTAGT 1259 Query 1534 AGATACAGAAGAGATAGATTGTTTGAAGCGAGTAGGAGGGTTAAACGAGAACGCAGGCTC 1593 ||||||||||||||||| |||||||| |||||||||||||||||||||||||||| ||| Sbjct 1260 GGATACAGAAGAGATAGACTGTTTGAAACGAGTAGGAGGGTTAAACGAGAACGCAGACTC 1319 Query 1594 CATTTACGAGCTCTATAGACAACCCAACCCTGCTTGTGAAGCAGGTTCAATCTGGAAAGA 1653 |||||||||||| |||||||||||||| |||||||||||| | || |||||||||||||| Sbjct 1320 CATTTACGAGCTTTATAGACAACCCAATCCTGCTTGTGAAACTGGATCAATCTGGAAAGA 1379 Query 1654 CATTGTTCTTTCACCTTCAAGGTTTAGCATTCAACAGGAACTCAAATATTCCATTCAGAA 1713 |||||||||||||||||||||||||| ||||||||||||||| ||||| ||||||||||| Sbjct 1380 CATTGTTCTTTCACCTTCAAGGTTTAACATTCAACAGGAACTAAAATACTCCATTCAGAA 1439 Query 1714 AGTTGAAAAAAGATCTAAACAACATCTCATCAACAACACCAAAAGCTGA 1762 |||||||| | |||||||||| | || |||||||||||||||||||| Sbjct 1440 AGTTGAAA---GCTCTAAACAAC-T-TC-TCAACAACACCAAAAGCTGA 1482 > Ahg481980 jgi|Araly1|481980|fgenesh2_kg.4__1040__AT2G30630.1 Length=1817 Score = 1376 bits (745), Expect = 0.0 Identities = 1227/1457 (84%), Gaps = 44/1457 (3%) Strand=Plus/Plus Query 287 GCAGTGCA-TTACCGTCTGC-GGAGGCTACGTGACACCAA-AATCATCCCTCGTCTCAAA 343 ||| |||| || |||||| | ||| ||||||| || |||| || |||||||||||| | | Sbjct 242 GCACTGCACTT-CCGTCT-CAGGAAGCTACGTCACTCCAAGAA-CATCCCTCGTCTTAGA 298 Query 344 TCATCTCACAAACACAAAGGCCATGAGAAACTCGAGAGATTCTCTCATTACGTCGCAAGG 403 || |||||||||||||||||||||||||| || |||||||||||||| || || | || Sbjct 299 TCGTCTCACAAACACAAAGGCCATGAGAAGCTTGAGAGATTCTCTCACTATGTTGTGCGG 358 Query 404 CAAATGGGATTCAAGGACAGAAGAGAGTGTCCAAATCTCTGCAAGTTAGCAGCA-GAATA 462 |||||||||||||||||||| ||||| ||||| |||||||||| ||||| | || || Sbjct 359 CAAATGGGATTCAAGGACAGGAGAGAATGTCCTCATCTCTGCAAATTAGC-TAATGAGTA 417 Query 463 CATAAGTAAATC-TGAATGTTGTGAAGAAGACATTTACAGCTTTTTCTCTGAAGAACCTG 521 |||||| ||||| | | | ||||| ||||||||||||||||||||||| ||||| |||| Sbjct 418 CATAAGAAAATCAGGTA-GCTGTGAGGAAGACATTTACAGCTTTTTCTCAGAAGAGCCTG 476 Query 522 ATGCTGATACCCTCTTCATTAAGCTTGTTGAGGAGTTTGAAAGATGCATTCTCAGCTACT 581 ||||||| | |||||||||||||| || || |||||||| ||||| |||||||| |||| Sbjct 477 GTGCTGATTCTCTCTTCATTAAGCTCGTCGAAGAGTTTGAGAGATGTATTCTCAGTTACT 536 Query 582 TTGCGTT-TCACTGGAGCCACGCCGATCTCATGATTACTCAGGTACTGAGCGCTGATGCT 640 |||| || ||||||||||| || ||||||||||| | |||| |||| ||||| |||| | Sbjct 537 TTGC-TTACCACTGGAGCCATGCGGATCTCATGATCAGTCAGATACTCAGCGCCGATG-T 594 Query 641 -GAGCCAAAGAGGAAGCTGAAA-CAAATTGTGATGGCAGCTACAAGGGAGCTGAGGA-TT 697 ||||| |||| |||||| ||| || ||||| ||||| ||||||||||| | || || || Sbjct 595 AGAGCCTAAGAAGAAGCT-AAAGCACATTGTTATGGCGGCTACAAGGGAACAGA-GATTT 652 Query 698 AAGAGGGTGACTAAGAACT-TAAAAGTGGCAAGAGTGTTCAACACTTTGGTAGAGGAAAT 756 ||||||||||||| || | |||||||||||||||| || ||||| |||||||||||||| Sbjct 653 GAGAGGGTGACTAA-AAATCTAAAAGTGGCAAGAGTCTTTAACACATTGGTAGAGGAAAT 711 Query 757 GAGAGCAATGGGGCTCGCGTCTGTGGATGACTC-GCAGTGCACAGAAGTTATGGCACCAG 815 || |||||||||| | || ||||| |||||||| | |||| |||||||||||||| |||| Sbjct 712 GAAAGCAATGGGGATTGCATCTGTTGATGACTCTG-AGTGTACAGAAGTTATGGCTCCAG 770 Query 816 TGGCTCACAAAGACAGAAGTCCAGTGCTACTCCTTATGGGTGGTGGGATGGGTGCAGGGA 875 | || ||||| ||| |||| || || ||||||||||||| ||||| ||||||||||||| Sbjct 771 TTGCACACAAGGACCGAAGCCCGGTTTTACTCCTTATGGGAGGTGGTATGGGTGCAGGGA 830 Query 876 AAAGCACTGTGCTTAAGGACATACTCAAAGAAGCATTCTGGGCAGGAGCAGACT-CTGTG 934 | |||||||||||||| ||||| ||||||||| | || ||||||||||| || | ||||| Sbjct 831 AGAGCACTGTGCTTAAAGACATTCTCAAAGAACCGTTTTGGGCAGGAGCTGA-TGCTGTG 889 Query 935 GTGATTGAAGCTGATGCTTTCAAAGAGTCTGATGTCATTTACAGAGCCTTAAGCTCTC-G 993 ||||| |||||||||||||||||||| |||||||| || |||||||| |||||||| | | Sbjct 890 GTGATCGAAGCTGATGCTTTCAAAGAATCTGATGTGATATACAGAGCTTTAAGCTC-CAG 948 Query 994 TGGCCATGTCGATATGATCCAGACAGCTGAATTGGTTCATCAGTCATCAACAGATGCAGC 1053 |||||||| ||||||||| |||| |||||||| ||||| || ||||||||||||||||| Sbjct 949 AGGCCATGTTGATATGATCAAGACTGCTGAATTCGTTCACCAATCATCAACAGATGCAGC 1008 Query 1054 TTCATCCCTGCTAGTGACGGCTCTGAACGAAGGAAGGGATGTGATAATGGATGGGACACT 1113 ||||| ||||| || || ||||| |||||||| |||| |||||||||||||| ||||| Sbjct 1009 ATCATCGCTGCTCGTTACAGCTCTCAACGAAGGGCGGGACGTGATAATGGATGGAACACT 1068 Query 1114 CTCTTGGGTACCTTTTGTGGTGCAGACAATAACAATGGCGAGGAACGTACACCGACACCA 1173 ||||||||| || |||||||| ||||| ||||| ||||| ||||| || || || || | Sbjct 1069 CTCTTGGGTTCCATTTGTGGTTCAGACCATAACCATGGCAAGGAATGTGCATCGCCATCG 1128 Query 1174 TTACAGAATGGGAGCTGGATACAAGGTTGGTGATG-ATGGAGTTATAACAGAGAACTATT 1232 |||||||||||||||||| |||||||||||||| | |||||| | | | ||||||||||| Sbjct 1129 TTACAGAATGGGAGCTGGCTACAAGGTTGGTGA-GAATGGAGATGTCATAGAGAACTATT 1187 Query 1233 GGGAACGAATTGGTGAAAGGCAACAGA-TTCAAGAGGATGG-TCGTAGGAGAAAACCGTA 1290 ||||||| || || ||||| ||||| | | ||||| ||||| | | |||||| || || Sbjct 1188 GGGAACGCATAGGCGAAAGACAACA-ACTACAAGATGATGGAAGGGA-GAGAAAGCCATA 1245 Query 1291 TAGAATAGAACTAGTTGGAGTTGTGTGCGATGCGTATTTAGCAGTTATAAGAGGCATTAG 1350 || ||||| |||||||||||||||| ||||| ||||||||||| || |||||||||| Sbjct 1246 CAGGATAGAGTTAGTTGGAGTTGTGTGTGATGCATATTTAGCAGTGATTCGAGGCATTAG 1305 Query 1351 GAGAGCTATCATGTGCAGAAGAGCAGTTAGGGTGAGATCACAGCTGAGATCTCACAA-AC 1409 |||||| || ||||| |||||||||||||| |||||||| ||||||||||||||||| | Sbjct 1306 GAGAGCAATAATGTGTAGAAGAGCAGTTAGAGTGAGATCTCAGCTGAGATCTCACAAGA- 1364 Query 1410 GGTTTGCGGAAGCATTTCCTACATATTGCAGCCTT-GTCGACAATGCTAGGCTCTACTGC 1468 ||||||| || || |||| ||| ||||||| ||| || ||||||||||| || |||||| Sbjct 1365 GGTTTGCTGATGCGTTTCTTACCTATTGCA-ACTTAGTTGACAATGCTAGACTTTACTGC 1423 Query 1469 ACTAACGCGCTGGAAGGCTCTCCAAAGCTGATAGGTTGGAAAGAAAAGGAAAAGACATTG 1528 || || || || ||||| ||||||||||||||||| |||||||||||||||||||||||| Sbjct 1424 ACCAATGCTCTTGAAGGTTCTCCAAAGCTGATAGGGTGGAAAGAAAAGGAAAAGACATTG 1483 Query 1529 CTAGTAGATACAGAAGAGATAGATTGTTTGAAGCGA-GTAGG-AGGGTTAAACGAGAACG 1586 ||||| ||| |||| |||||||| ||||||||| | ||||| ||| ||||||||||| | Sbjct 1484 CTAGTGGATCCAGAGGAGATAGACTGTTTGAAGA-ATGTAGGGAGG-TTAAACGAGAATG 1541 Query 1587 CAGGCTCC-ATTTACGAGCTCTATAGACAACCCAAC-CCTGCTTGTGAAGCAGGTTCAAT 1644 | || | | || |||||||| || ||| || |||| |||||||||||||| || ||||| Sbjct 1542 C-GGATTCTATCTACGAGCTATACAGA-AATCCAAATCCTGCTTGTGAAGCTGGATCAAT 1599 Query 1645 CTGGAAAGACATTGTTCTTTCACCTTCAAGGTTTAGCATTCAACAGGAACTCAAATATTC 1704 |||||||||||||||||||| |||||||| || | |||||||||||| |||||||| || Sbjct 1600 ATGGAAAGACATTGTTCTTTCTCCTTCAAGATTCAACATTCAACAGGAGCTCAAATACTC 1659 Query 1705 CATTCAGAAAGTTGAAA 1721 ||||||||||| |||| Sbjct 1660 AATTCAGAAAGTCGAAA 1676 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 72028653295 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5