BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G06750.2
Length=1917
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470697 jgi|Araly1|470697|fgenesh2_kg.1__651__AT1G06750.1 2388 0.0
Ahg481980 jgi|Araly1|481980|fgenesh2_kg.4__1040__AT2G30630.1 1376 0.0
> Ahg470697 jgi|Araly1|470697|fgenesh2_kg.1__651__AT1G06750.1
Length=1482
Score = 2388 bits (1293), Expect = 0.0
Identities = 1425/1489 (96%), Gaps = 8/1489 (1%)
Strand=Plus/Plus
Query 275 ATGATAGCAGCCGCAGTGCATTACCGTCTGCGGAGGCTACGTGACACCAAAATCATCCCT 334
|||||||||||||||||||||||||| ||||||||| |||||||| ||||||||||||||
Sbjct 1 ATGATAGCAGCCGCAGTGCATTACCGCCTGCGGAGGATACGTGACTCCAAAATCATCCCT 60
Query 335 CGTCTCAAATCATCTCACAAACACAAAGGCCATGAGAAACTCGAGAGATTCTCTCATTAC 394
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CGTCTCAGATTATCTCACAAACACAAAGGCCATGAGAAACTCGAGAGATTCTCTCATTAC 120
Query 395 GTCGCAAGGCAAATGGGATTCAAGGACAGAAGAGAGTGTCCAAATCTCTGCAAGTTAGCA 454
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GTAGCAAGGCAAATGGGATTCAAGGACAGAAGAGAGTGTCCAAATCTCTGCAAGTTAGCA 180
Query 455 GCAGAATACATAAGTAAATCTGAATGTTGTGAAGAAGACATTTACAGCTTTTTCTCTGAA 514
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 181 GCAGAATACATAAGCAAATCTGAATGTTGTGAAGAAGATATTTACAGCTTTTTCTCTGAA 240
Query 515 GAACCTGATGCTGATACCCTCTTCATTAAGCTTGTTGAGGAGTTTGAAAGATGCATTCTC 574
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GAGCCTGATGCTGATACCCTCTTCATTAAGCTTGTTGAGGAGTTTGAAAGATGCATTCTC 300
Query 575 AGCTACTTTGCGTTTCACTGGAGCCACGCCGATCTCATGATTACTCAGGTACTGAGCGCT 634
||||||||||||||||||||||||||||||||||||||||||| |||| || |||||||
Sbjct 301 AGCTACTTTGCGTTTCACTGGAGCCACGCCGATCTCATGATTAGTCAGATATTGAGCGCG 360
Query 635 GATGCTGAGCCAAAGAGGAAGCTGAAACAAATTGTGATGGCAGCTACAAGGGAGCTGAGG 694
|||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 361 GATGCTGAGCCAAAGAGGAAGCTGAAGCAAATTGTGATGGCAGCTACAAGGGAGCAGAGG 420
Query 695 ATTAAGAGGGTGACTAAGAACTTAAAAGTGGCAAGAGTGTTCAACACTTTGGTAGAGGAA 754
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 ATTAAGAGGGTGACTAAGAACTTAAAAGTGGCAAGAGTGTTCAACACTTTGGTAGAGGAA 480
Query 755 ATGAGAGCAATGGGGCTCGCGTCTG-TGGATGACTCGCAGTGCACAGAAGTTATGGCACC 813
|||| |||||||||||||||||||| | |||||||||||||| |||||||||||||||||
Sbjct 481 ATGAAAGCAATGGGGCTCGCGTCTGCT-GATGACTCGCAGTGTACAGAAGTTATGGCACC 539
Query 814 AGTGGCTCACAAAGACAGAAGTCCAGTGCTACTCCTTATGGGTGGTGGGATGGGTGCAGG 873
|||||||||||||||| ||||||| || || ||||| |||||||||||||||||||||||
Sbjct 540 AGTGGCTCACAAAGACCGAAGTCCGGTTCTGCTCCTCATGGGTGGTGGGATGGGTGCAGG 599
Query 874 GAAAAGCACTGTGCTTAAGGACATACTCAAAGAAGCATTCTGGGCAGGAGCAGACTCTGT 933
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 AAAAAGCACTGTTCTTAAGGACATACTCAAAGAAGCATTCTGGGCAGGAGCAGACTCTGT 659
Query 934 GGTGATTGAAGCTGATGCTTTCAAAGAGTCTGATGTCATTTACAGAGCCTTAAGCTCTCG 993
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 660 GGTGATTGAAGCTGATGCTTTCAAAGAATCTGATGTCATTTACAGAGCCTTAAGCTCTCG 719
Query 994 TGGCCATGTCGATATGATCCAGACAGCTGAATTGGTTCATCAGTCATCAACAGATGCAGC 1053
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 720 TGGCCATGTCGATATGATCCAGACAGCTGAATTGGTTCACCAGTCATCTACAGATGCAGC 779
Query 1054 TTCATCCCTGCTAGTGACGGCTCTGAACGAAGGAAGGGATGTGATAATGGATGGGACACT 1113
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 780 TTCATCCCTGCTAGTGACGGCTCTGAATGAAGGGAGGGATGTGATAATGGATGGGACACT 839
Query 1114 CTCTTGGGTACCTTTTGTGGTGCAGACAATAACAATGGCGAGGAACGTACACCGACACCA 1173
||| |||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||
Sbjct 840 CTCGTGGGTACCTTTTGTGGTGCAGACAATAACAATGGCGAGAAACGTGCACCGTCACCA 899
Query 1174 TTACAGAATGGGAGCTGGATACAAGGTTGGTGATGATGGAGTTATAACAGAGAACTATTG 1233
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 900 TTACAGAATGGGAGCTGGATACAAGGTTGGTGATGATGGAGTTATCACAGAGAACTATTG 959
Query 1234 GGAACGAATTGGTGAAAGGCAACAGATTCAAGAGGATGGTCGTAGGAGAAAACCGTATAG 1293
|||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 960 GGAACGGATTGGTGAAAGGCAACAGCTTCAAGAGGATGGTCGTAGGAGAAAACCGTATAG 1019
Query 1294 AATAGAACTAGTTGGAGTTGTGTGCGATGCGTATTTAGCAGTTATAAGAGGCATTAGGAG 1353
||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||
Sbjct 1020 AATAGAACTAGTTGGAGTTGTATGCGATGCATATTTAGCAGTAATAAGAGGCATTAGGAG 1079
Query 1354 AGCTATCATGTGCAGAAGAGCAGTTAGGGTGAGATCACAGCTGAGATCTCACAAACGGTT 1413
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 AGCCATCATGTGCAGAAGAGCAGTTAGGGTGAGATCACAGCTGAGATCTCACAAACGGTT 1139
Query 1414 TGCGGAAGCATTTCCTACATATTGCAGCCTTGTCGACAATGCTAGGCTCTACTGCACTAA 1473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1140 TGCGGAAGCATTTCCTACATATTGCAGCCTTGTCGACAATGCTAGGCTCTACTGCACCAA 1199
Query 1474 CGCGCTGGAAGGCTCTCCAAAGCTGATAGGTTGGAAAGAAAAGGAAAAGACATTGCTAGT 1533
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1200 CGCACTGGAAGGCTCTCCAAAGCTGATAGGTTGGAAAGAAAAGGAAAAGACGTTGCTAGT 1259
Query 1534 AGATACAGAAGAGATAGATTGTTTGAAGCGAGTAGGAGGGTTAAACGAGAACGCAGGCTC 1593
||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |||
Sbjct 1260 GGATACAGAAGAGATAGACTGTTTGAAACGAGTAGGAGGGTTAAACGAGAACGCAGACTC 1319
Query 1594 CATTTACGAGCTCTATAGACAACCCAACCCTGCTTGTGAAGCAGGTTCAATCTGGAAAGA 1653
|||||||||||| |||||||||||||| |||||||||||| | || ||||||||||||||
Sbjct 1320 CATTTACGAGCTTTATAGACAACCCAATCCTGCTTGTGAAACTGGATCAATCTGGAAAGA 1379
Query 1654 CATTGTTCTTTCACCTTCAAGGTTTAGCATTCAACAGGAACTCAAATATTCCATTCAGAA 1713
|||||||||||||||||||||||||| ||||||||||||||| ||||| |||||||||||
Sbjct 1380 CATTGTTCTTTCACCTTCAAGGTTTAACATTCAACAGGAACTAAAATACTCCATTCAGAA 1439
Query 1714 AGTTGAAAAAAGATCTAAACAACATCTCATCAACAACACCAAAAGCTGA 1762
|||||||| | |||||||||| | || ||||||||||||||||||||
Sbjct 1440 AGTTGAAA---GCTCTAAACAAC-T-TC-TCAACAACACCAAAAGCTGA 1482
> Ahg481980 jgi|Araly1|481980|fgenesh2_kg.4__1040__AT2G30630.1
Length=1817
Score = 1376 bits (745), Expect = 0.0
Identities = 1227/1457 (84%), Gaps = 44/1457 (3%)
Strand=Plus/Plus
Query 287 GCAGTGCA-TTACCGTCTGC-GGAGGCTACGTGACACCAA-AATCATCCCTCGTCTCAAA 343
||| |||| || |||||| | ||| ||||||| || |||| || |||||||||||| | |
Sbjct 242 GCACTGCACTT-CCGTCT-CAGGAAGCTACGTCACTCCAAGAA-CATCCCTCGTCTTAGA 298
Query 344 TCATCTCACAAACACAAAGGCCATGAGAAACTCGAGAGATTCTCTCATTACGTCGCAAGG 403
|| |||||||||||||||||||||||||| || |||||||||||||| || || | ||
Sbjct 299 TCGTCTCACAAACACAAAGGCCATGAGAAGCTTGAGAGATTCTCTCACTATGTTGTGCGG 358
Query 404 CAAATGGGATTCAAGGACAGAAGAGAGTGTCCAAATCTCTGCAAGTTAGCAGCA-GAATA 462
|||||||||||||||||||| ||||| ||||| |||||||||| ||||| | || ||
Sbjct 359 CAAATGGGATTCAAGGACAGGAGAGAATGTCCTCATCTCTGCAAATTAGC-TAATGAGTA 417
Query 463 CATAAGTAAATC-TGAATGTTGTGAAGAAGACATTTACAGCTTTTTCTCTGAAGAACCTG 521
|||||| ||||| | | | ||||| ||||||||||||||||||||||| ||||| ||||
Sbjct 418 CATAAGAAAATCAGGTA-GCTGTGAGGAAGACATTTACAGCTTTTTCTCAGAAGAGCCTG 476
Query 522 ATGCTGATACCCTCTTCATTAAGCTTGTTGAGGAGTTTGAAAGATGCATTCTCAGCTACT 581
||||||| | |||||||||||||| || || |||||||| ||||| |||||||| ||||
Sbjct 477 GTGCTGATTCTCTCTTCATTAAGCTCGTCGAAGAGTTTGAGAGATGTATTCTCAGTTACT 536
Query 582 TTGCGTT-TCACTGGAGCCACGCCGATCTCATGATTACTCAGGTACTGAGCGCTGATGCT 640
|||| || ||||||||||| || ||||||||||| | |||| |||| ||||| |||| |
Sbjct 537 TTGC-TTACCACTGGAGCCATGCGGATCTCATGATCAGTCAGATACTCAGCGCCGATG-T 594
Query 641 -GAGCCAAAGAGGAAGCTGAAA-CAAATTGTGATGGCAGCTACAAGGGAGCTGAGGA-TT 697
||||| |||| |||||| ||| || ||||| ||||| ||||||||||| | || || ||
Sbjct 595 AGAGCCTAAGAAGAAGCT-AAAGCACATTGTTATGGCGGCTACAAGGGAACAGA-GATTT 652
Query 698 AAGAGGGTGACTAAGAACT-TAAAAGTGGCAAGAGTGTTCAACACTTTGGTAGAGGAAAT 756
||||||||||||| || | |||||||||||||||| || ||||| ||||||||||||||
Sbjct 653 GAGAGGGTGACTAA-AAATCTAAAAGTGGCAAGAGTCTTTAACACATTGGTAGAGGAAAT 711
Query 757 GAGAGCAATGGGGCTCGCGTCTGTGGATGACTC-GCAGTGCACAGAAGTTATGGCACCAG 815
|| |||||||||| | || ||||| |||||||| | |||| |||||||||||||| ||||
Sbjct 712 GAAAGCAATGGGGATTGCATCTGTTGATGACTCTG-AGTGTACAGAAGTTATGGCTCCAG 770
Query 816 TGGCTCACAAAGACAGAAGTCCAGTGCTACTCCTTATGGGTGGTGGGATGGGTGCAGGGA 875
| || ||||| ||| |||| || || ||||||||||||| ||||| |||||||||||||
Sbjct 771 TTGCACACAAGGACCGAAGCCCGGTTTTACTCCTTATGGGAGGTGGTATGGGTGCAGGGA 830
Query 876 AAAGCACTGTGCTTAAGGACATACTCAAAGAAGCATTCTGGGCAGGAGCAGACT-CTGTG 934
| |||||||||||||| ||||| ||||||||| | || ||||||||||| || | |||||
Sbjct 831 AGAGCACTGTGCTTAAAGACATTCTCAAAGAACCGTTTTGGGCAGGAGCTGA-TGCTGTG 889
Query 935 GTGATTGAAGCTGATGCTTTCAAAGAGTCTGATGTCATTTACAGAGCCTTAAGCTCTC-G 993
||||| |||||||||||||||||||| |||||||| || |||||||| |||||||| | |
Sbjct 890 GTGATCGAAGCTGATGCTTTCAAAGAATCTGATGTGATATACAGAGCTTTAAGCTC-CAG 948
Query 994 TGGCCATGTCGATATGATCCAGACAGCTGAATTGGTTCATCAGTCATCAACAGATGCAGC 1053
|||||||| ||||||||| |||| |||||||| ||||| || |||||||||||||||||
Sbjct 949 AGGCCATGTTGATATGATCAAGACTGCTGAATTCGTTCACCAATCATCAACAGATGCAGC 1008
Query 1054 TTCATCCCTGCTAGTGACGGCTCTGAACGAAGGAAGGGATGTGATAATGGATGGGACACT 1113
||||| ||||| || || ||||| |||||||| |||| |||||||||||||| |||||
Sbjct 1009 ATCATCGCTGCTCGTTACAGCTCTCAACGAAGGGCGGGACGTGATAATGGATGGAACACT 1068
Query 1114 CTCTTGGGTACCTTTTGTGGTGCAGACAATAACAATGGCGAGGAACGTACACCGACACCA 1173
||||||||| || |||||||| ||||| ||||| ||||| ||||| || || || || |
Sbjct 1069 CTCTTGGGTTCCATTTGTGGTTCAGACCATAACCATGGCAAGGAATGTGCATCGCCATCG 1128
Query 1174 TTACAGAATGGGAGCTGGATACAAGGTTGGTGATG-ATGGAGTTATAACAGAGAACTATT 1232
|||||||||||||||||| |||||||||||||| | |||||| | | | |||||||||||
Sbjct 1129 TTACAGAATGGGAGCTGGCTACAAGGTTGGTGA-GAATGGAGATGTCATAGAGAACTATT 1187
Query 1233 GGGAACGAATTGGTGAAAGGCAACAGA-TTCAAGAGGATGG-TCGTAGGAGAAAACCGTA 1290
||||||| || || ||||| ||||| | | ||||| ||||| | | |||||| || ||
Sbjct 1188 GGGAACGCATAGGCGAAAGACAACA-ACTACAAGATGATGGAAGGGA-GAGAAAGCCATA 1245
Query 1291 TAGAATAGAACTAGTTGGAGTTGTGTGCGATGCGTATTTAGCAGTTATAAGAGGCATTAG 1350
|| ||||| |||||||||||||||| ||||| ||||||||||| || ||||||||||
Sbjct 1246 CAGGATAGAGTTAGTTGGAGTTGTGTGTGATGCATATTTAGCAGTGATTCGAGGCATTAG 1305
Query 1351 GAGAGCTATCATGTGCAGAAGAGCAGTTAGGGTGAGATCACAGCTGAGATCTCACAA-AC 1409
|||||| || ||||| |||||||||||||| |||||||| ||||||||||||||||| |
Sbjct 1306 GAGAGCAATAATGTGTAGAAGAGCAGTTAGAGTGAGATCTCAGCTGAGATCTCACAAGA- 1364
Query 1410 GGTTTGCGGAAGCATTTCCTACATATTGCAGCCTT-GTCGACAATGCTAGGCTCTACTGC 1468
||||||| || || |||| ||| ||||||| ||| || ||||||||||| || ||||||
Sbjct 1365 GGTTTGCTGATGCGTTTCTTACCTATTGCA-ACTTAGTTGACAATGCTAGACTTTACTGC 1423
Query 1469 ACTAACGCGCTGGAAGGCTCTCCAAAGCTGATAGGTTGGAAAGAAAAGGAAAAGACATTG 1528
|| || || || ||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1424 ACCAATGCTCTTGAAGGTTCTCCAAAGCTGATAGGGTGGAAAGAAAAGGAAAAGACATTG 1483
Query 1529 CTAGTAGATACAGAAGAGATAGATTGTTTGAAGCGA-GTAGG-AGGGTTAAACGAGAACG 1586
||||| ||| |||| |||||||| ||||||||| | ||||| ||| ||||||||||| |
Sbjct 1484 CTAGTGGATCCAGAGGAGATAGACTGTTTGAAGA-ATGTAGGGAGG-TTAAACGAGAATG 1541
Query 1587 CAGGCTCC-ATTTACGAGCTCTATAGACAACCCAAC-CCTGCTTGTGAAGCAGGTTCAAT 1644
| || | | || |||||||| || ||| || |||| |||||||||||||| || |||||
Sbjct 1542 C-GGATTCTATCTACGAGCTATACAGA-AATCCAAATCCTGCTTGTGAAGCTGGATCAAT 1599
Query 1645 CTGGAAAGACATTGTTCTTTCACCTTCAAGGTTTAGCATTCAACAGGAACTCAAATATTC 1704
|||||||||||||||||||| |||||||| || | |||||||||||| |||||||| ||
Sbjct 1600 ATGGAAAGACATTGTTCTTTCTCCTTCAAGATTCAACATTCAACAGGAGCTCAAATACTC 1659
Query 1705 CATTCAGAAAGTTGAAA 1721
||||||||||| ||||
Sbjct 1660 AATTCAGAAAGTCGAAA 1676
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72028653295
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5