BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G06760.1 Length=1090 Score E Sequences producing significant alignments: (Bits) Value Ahg470698 jgi|Araly1|470698|fgenesh2_kg.1__652__AT1G06760.1 1528 0.0 > Ahg470698 jgi|Araly1|470698|fgenesh2_kg.1__652__AT1G06760.1 Length=1111 Score = 1528 bits (827), Expect = 0.0 Identities = 1022/1113 (92%), Gaps = 25/1113 (2%) Strand=Plus/Plus Query 1 CTTCACAATCCTCATAATCACTTTCGAAATTACATTTACGCTTTCTTGCAATCAAATTTT 60 |||||||||||||||||||||||||||||| ||||||||| ||||| ||||||| ||||| Sbjct 1 CTTCACAATCCTCATAATCACTTTCGAAATCACATTTACGTTTTCTAGCAATCACATTTT 60 Query 61 CCGATCTTAAGTTCAGAAGACGATGTCAGAGGTGGAAATAGAGAACGCTGCTACGATCGA 120 |||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||| Sbjct 61 CCGATCTTAAGTTCCGAAGACGATGTCAGAGGTGGAGTTAGAGAACGCAGCTACGATCGA 120 Query 121 AGGAAACACCGCTGCGGATGCGCCGGTGACGGATGCGGCCGT--TG-agaagaagcctgc 177 |||| |||||||| ||||||| |||||||||| ||||| || | ||||||||||||| Sbjct 121 CGGAACCACCGCTGAGGATGCGACGGTGACGGAGGCGGCAGTCGAGAAGAAGAAGCCTGC 180 Query 178 agcgaaaggacgaaagacgaagaatgttaaggaagtgaaggagaagaagaCTGTTGCTGC 237 |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 181 AGCGAAGGGACGAAAGACGAAGAAAGTTAAGGAAGTGAAGGAGAAGAAGACTGTTGCTGC 240 Query 238 CGCTCCGAAGAAGAGAACTGTTTCATCTCATCCTACTTACGAAGAGATGATTAAGGATGC 297 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 241 TGCTCCGAAGAAGAGAACTGTTTCATCTCATCCTACTTACGAAGAGATGATTAAGGACGC 300 Query 298 GATTGTTACGTTGAAAGAGAGAACTGGATCTAGCCAATACGCGATTCAGAAGTTCATCGA 357 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 GATTGTTACGTTGAAGGAGAGAACTGGATCTAGCCAATACGCGATTCAGAAGTTCATCGA 360 Query 358 GGAGAAGCGTAAGGAGCTTCCTCCAACATTCAGAAAGCTGTTGCTTCTCAATCTGAAGAG 417 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 361 GGAGAAGCGTAAGGAGCTTCCTCCAACATTCAGAAAGCTCTTGCTTCTCAATCTGAAGAG 420 Query 418 ACTCGTTGCTTCTGGGAAGCTTGTGAAGGTCAAAGCCTCGTTTAAACTCCCATCGGCGTC 477 ||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 421 ACTTGTTGCTTCTGGGAAGCTTGTCAAGGTCAAAGCCTCGTTTAAACTCCCATCGGCGTC 480 Query 478 GGCTAAAGCATCATCCCCTAAGGCGGCAGCGGAG---A--A-ATCTGCTCCTGCGAAGAA 531 ||||||||||||||||||||||||||| |||| | | | |||||||||||||||||| Sbjct 481 GGCTAAAGCATCATCCCCTAAGGCGGCGGCGGCGGCGACGACATCTGCTCCTGCGAAGAA 540 Query 532 GAAACCGGCG---ACTGTGGCGGTTACCAAGGCGAAGAGAAAGGTCGCTGCGGCTTCCAA 588 |||||||||| |||||||||||||| ||| ||||| |||||||||| |||||| |||| Sbjct 541 GAAACCGGCGGCGACTGTGGCGGTTACTAAGCCGAAGGGAAAGGTCGCAGCGGCTCCCAA 600 Query 589 GGCTAAGAAAACAATC-GCCGTTAAACCTAAGACTGCTGCTGCTAAGAAAGTGACCGCGA 647 || |||||| || | ||||||||||||||||| |||||||||||||||||||| || | Sbjct 601 AGCGAAGAAATCAG-CAGCCGTTAAACCTAAGACAGCTGCTGCTAAGAAAGTGACTGCCA 659 Query 648 AGGCTAAGGCTAAGCCCGTTCCTCGTGCCACTGCTGCTGCAACTAAGAGGAAAGCTGTTG 707 |||||||||||||| |||||||||||||||||||||||| |||||||||||||||| | Sbjct 660 AGGCTAAGGCTAAGGTTGTTCCTCGTGCCACTGCTGCTGCACCTAAGAGGAAAGCTGTGG 719 Query 708 ATGCGAAGCCCAAGGCTAAGGCTAGACCAGCCAAGGCAGCCAAAACGGCCAAGGTTACAT 767 |||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |||| Sbjct 720 ATGCGAAGCCCAAGTCTAAGGGTAGACCAGCCAAGGCAGCCAAAACGGCCAAGGTAACAT 779 Query 768 CTCCGGCTAAGAAAGCTGTTGCTGCCACGAAGAAAGTTGCTACGGTGGCCACAAAGAAGA 827 | ||||| ||||||||||||||||| | ||||||||||||||||||||||| ||||||| Sbjct 780 CGCCGGCGAAGAAAGCTGTTGCTGCGAAAAAGAAAGTTGCTACGGTGGCCACGAAGAAGA 839 Query 828 AGACTCCGGTTAAGAAGGTTGTGAAGCCAAAGACGGTTAAGTCTCCAGCAAAGAGGGCTT 887 |||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 840 AGACTCCGGTGAAGAAGGTTGTGAAGCCAAAGACGGTGAAGTCTCCAGCAAAGAGGGCTT 899 Query 888 CTTCTAGGGTTAAGAAGTGAAGTTAGGGTTTGTAGGTAGAAGAATGGTTAACGATAGTT- 946 |||||||||| ||||||| || |||||||||||||||||||||| |||||||||||||| Sbjct 900 CTTCTAGGGTGAAGAAGTAAAATTAGGGTTTGTAGGTAGAAGAAGGGTTAACGATAGTTG 959 Query 947 -T-AGACTTGTATAATTCAATCATC-TTT-ATGCGACTTTGTTTGCTTTTCTTCTTT-CA 1001 | || ||||||||||||||| ||| ||| | | ||||| ||||||||||||||||| || Sbjct 960 GTTAGTCTTGTATAATTCAATGATCCTTTTAAGTGACTT-GTTTGCTTTTCTTCTTTTCA 1018 Query 1002 GTGTTCTTGTTATTCACAGTTCCTTTGGACT--ACCCCTTAAA--TCATATATAGATTTC 1057 |||||||||| |||||||||| |||||| || | |||||||| ||||||||||||||| Sbjct 1019 GTGTTCTTGTAATTCACAGTTGCTTTGGTCTCTATCCCTTAAAAATCATATATAGATTTC 1078 Query 1058 ATCAATGAAGCAAACTCGAGTTTCTTTGCAGCT 1090 |||||||||||||| |||||||||||||||||| Sbjct 1079 ATCAATGAAGCAAAATCGAGTTTCTTTGCAGCT 1111 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 40600906605 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5