BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G06760.1
Length=1090
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470698 jgi|Araly1|470698|fgenesh2_kg.1__652__AT1G06760.1 1528 0.0
> Ahg470698 jgi|Araly1|470698|fgenesh2_kg.1__652__AT1G06760.1
Length=1111
Score = 1528 bits (827), Expect = 0.0
Identities = 1022/1113 (92%), Gaps = 25/1113 (2%)
Strand=Plus/Plus
Query 1 CTTCACAATCCTCATAATCACTTTCGAAATTACATTTACGCTTTCTTGCAATCAAATTTT 60
|||||||||||||||||||||||||||||| ||||||||| ||||| ||||||| |||||
Sbjct 1 CTTCACAATCCTCATAATCACTTTCGAAATCACATTTACGTTTTCTAGCAATCACATTTT 60
Query 61 CCGATCTTAAGTTCAGAAGACGATGTCAGAGGTGGAAATAGAGAACGCTGCTACGATCGA 120
|||||||||||||| ||||||||||||||||||||| |||||||||| |||||||||||
Sbjct 61 CCGATCTTAAGTTCCGAAGACGATGTCAGAGGTGGAGTTAGAGAACGCAGCTACGATCGA 120
Query 121 AGGAAACACCGCTGCGGATGCGCCGGTGACGGATGCGGCCGT--TG-agaagaagcctgc 177
|||| |||||||| ||||||| |||||||||| ||||| || | |||||||||||||
Sbjct 121 CGGAACCACCGCTGAGGATGCGACGGTGACGGAGGCGGCAGTCGAGAAGAAGAAGCCTGC 180
Query 178 agcgaaaggacgaaagacgaagaatgttaaggaagtgaaggagaagaagaCTGTTGCTGC 237
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 181 AGCGAAGGGACGAAAGACGAAGAAAGTTAAGGAAGTGAAGGAGAAGAAGACTGTTGCTGC 240
Query 238 CGCTCCGAAGAAGAGAACTGTTTCATCTCATCCTACTTACGAAGAGATGATTAAGGATGC 297
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 241 TGCTCCGAAGAAGAGAACTGTTTCATCTCATCCTACTTACGAAGAGATGATTAAGGACGC 300
Query 298 GATTGTTACGTTGAAAGAGAGAACTGGATCTAGCCAATACGCGATTCAGAAGTTCATCGA 357
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GATTGTTACGTTGAAGGAGAGAACTGGATCTAGCCAATACGCGATTCAGAAGTTCATCGA 360
Query 358 GGAGAAGCGTAAGGAGCTTCCTCCAACATTCAGAAAGCTGTTGCTTCTCAATCTGAAGAG 417
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 361 GGAGAAGCGTAAGGAGCTTCCTCCAACATTCAGAAAGCTCTTGCTTCTCAATCTGAAGAG 420
Query 418 ACTCGTTGCTTCTGGGAAGCTTGTGAAGGTCAAAGCCTCGTTTAAACTCCCATCGGCGTC 477
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 421 ACTTGTTGCTTCTGGGAAGCTTGTCAAGGTCAAAGCCTCGTTTAAACTCCCATCGGCGTC 480
Query 478 GGCTAAAGCATCATCCCCTAAGGCGGCAGCGGAG---A--A-ATCTGCTCCTGCGAAGAA 531
||||||||||||||||||||||||||| |||| | | | ||||||||||||||||||
Sbjct 481 GGCTAAAGCATCATCCCCTAAGGCGGCGGCGGCGGCGACGACATCTGCTCCTGCGAAGAA 540
Query 532 GAAACCGGCG---ACTGTGGCGGTTACCAAGGCGAAGAGAAAGGTCGCTGCGGCTTCCAA 588
|||||||||| |||||||||||||| ||| ||||| |||||||||| |||||| ||||
Sbjct 541 GAAACCGGCGGCGACTGTGGCGGTTACTAAGCCGAAGGGAAAGGTCGCAGCGGCTCCCAA 600
Query 589 GGCTAAGAAAACAATC-GCCGTTAAACCTAAGACTGCTGCTGCTAAGAAAGTGACCGCGA 647
|| |||||| || | ||||||||||||||||| |||||||||||||||||||| || |
Sbjct 601 AGCGAAGAAATCAG-CAGCCGTTAAACCTAAGACAGCTGCTGCTAAGAAAGTGACTGCCA 659
Query 648 AGGCTAAGGCTAAGCCCGTTCCTCGTGCCACTGCTGCTGCAACTAAGAGGAAAGCTGTTG 707
|||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |
Sbjct 660 AGGCTAAGGCTAAGGTTGTTCCTCGTGCCACTGCTGCTGCACCTAAGAGGAAAGCTGTGG 719
Query 708 ATGCGAAGCCCAAGGCTAAGGCTAGACCAGCCAAGGCAGCCAAAACGGCCAAGGTTACAT 767
|||||||||||||| |||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 720 ATGCGAAGCCCAAGTCTAAGGGTAGACCAGCCAAGGCAGCCAAAACGGCCAAGGTAACAT 779
Query 768 CTCCGGCTAAGAAAGCTGTTGCTGCCACGAAGAAAGTTGCTACGGTGGCCACAAAGAAGA 827
| ||||| ||||||||||||||||| | ||||||||||||||||||||||| |||||||
Sbjct 780 CGCCGGCGAAGAAAGCTGTTGCTGCGAAAAAGAAAGTTGCTACGGTGGCCACGAAGAAGA 839
Query 828 AGACTCCGGTTAAGAAGGTTGTGAAGCCAAAGACGGTTAAGTCTCCAGCAAAGAGGGCTT 887
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 840 AGACTCCGGTGAAGAAGGTTGTGAAGCCAAAGACGGTGAAGTCTCCAGCAAAGAGGGCTT 899
Query 888 CTTCTAGGGTTAAGAAGTGAAGTTAGGGTTTGTAGGTAGAAGAATGGTTAACGATAGTT- 946
|||||||||| ||||||| || |||||||||||||||||||||| ||||||||||||||
Sbjct 900 CTTCTAGGGTGAAGAAGTAAAATTAGGGTTTGTAGGTAGAAGAAGGGTTAACGATAGTTG 959
Query 947 -T-AGACTTGTATAATTCAATCATC-TTT-ATGCGACTTTGTTTGCTTTTCTTCTTT-CA 1001
| || ||||||||||||||| ||| ||| | | ||||| ||||||||||||||||| ||
Sbjct 960 GTTAGTCTTGTATAATTCAATGATCCTTTTAAGTGACTT-GTTTGCTTTTCTTCTTTTCA 1018
Query 1002 GTGTTCTTGTTATTCACAGTTCCTTTGGACT--ACCCCTTAAA--TCATATATAGATTTC 1057
|||||||||| |||||||||| |||||| || | |||||||| |||||||||||||||
Sbjct 1019 GTGTTCTTGTAATTCACAGTTGCTTTGGTCTCTATCCCTTAAAAATCATATATAGATTTC 1078
Query 1058 ATCAATGAAGCAAACTCGAGTTTCTTTGCAGCT 1090
|||||||||||||| ||||||||||||||||||
Sbjct 1079 ATCAATGAAGCAAAATCGAGTTTCTTTGCAGCT 1111
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40600906605
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5