BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G06770.1
Length=1797
Score E
Sequences producing significant alignments: (Bits) Value
Ahg919392 jgi|Araly1|919392|scaffold_100673.1 2008 0.0
> Ahg919392 jgi|Araly1|919392|scaffold_100673.1
Length=1367
Score = 2008 bits (1087), Expect = 0.0
Identities = 1284/1377 (93%), Gaps = 21/1377 (2%)
Strand=Plus/Plus
Query 201 CCCAACAGATAAAGAGAAAGA---TGATGATTAAGGTGAAGAAGGAGACGATGAGGGCAT 257
||||||||||| ||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct 1 CCCAACAGATAGAGAGAAAGATGGTGATGATTAAGGTGAAAAAGGAGACGATGAGGGCAT 60
Query 258 GCTTAAGCTGCTCTATCTGCGACAATATCCTCCGTGACGCCACCACTATCTCCGAGTGCC 317
|||| |||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GCTTTAGCTGCCCTCTCTGCGACAATATCCTCCGTGACGCCACCACTATCTCCGAGTGCC 120
Query 318 TCCACACATTTTGTAGGAAATGCATCTATGAGAAGATCACGGAGGATGAGATAGAGACTT 377
| ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 121 TTCACACATTTTGTAGGAAATGCATCTATGAAAAGATCACAGAGGATGAGATAGAGACTT 180
Query 378 GTCCCGTATGCAATATCGACCTCGGTAGCACCCCATTGGAGAAGCTGAGGCCTGACCACA 437
| ||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 181 GCCCCGTGTGCAATATCGACCTCGGTGGCACCCCATTGGAGAAGCTGAGGCCTGACCACA 240
Query 438 ATTTGCAAGACTTGAGGGCCAAAATCTTTGCTCTAAAACGAAGAAAAGTGAAAGCTCCTG 497
||||||||||||| ||||||||||| ||| |||||||||||| |||||||||||||||||
Sbjct 241 ATTTGCAAGACTTAAGGGCCAAAATTTTTCCTCTAAAACGAAAAAAAGTGAAAGCTCCTG 300
Query 498 GAATTGTGTCCT-TACCAGG-AAAGAGGAAGGAGAGATCTATATCTTCTTTGGTTGTGAG 555
||||||||| || |||| || |||||||||||||||||||||||| |||||||||||||
Sbjct 301 GAATTGTGT-CTGTACC-GGCAAAGAGGAAGGAGAGATCTATATCGTCTTTGGTTGTGAC 358
Query 556 CACACCTATGG-TGTCAGCACAAGCTGGAACAACGAGAAGAAGAACTAAAGCACCTACAA 614
|||||||| || ||||| ||||||||||||||||| |||||||||||||||| | ||||
Sbjct 359 CACACCTA-GGTTGTCATCACAAGCTGGAACAACGGGAAGAAGAACTAAAGCGGCAACAA 417
Query 615 GAAAAGAGTTACGTAATGGTTCTTTGGCTGAGAGAAC-TGTGAAGAAGGAAGAATCTTCT 673
|||||||||||||||||||||||||||||||||| || ||||||||| ||||||||||||
Sbjct 418 GAAAAGAGTTACGTAATGGTTCTTTGGCTGAGAG-ACGTGTGAAGAAAGAAGAATCTTCT 476
Query 674 GGGGATGAGCTTCTGGAGAGCACAAGCTCACCCGACACTCTTAACAAATTCACTCAGAAT 733
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 GGTGATGAGCTTCTAGAGAGCACAAGCTCACCCGACACTCTTAACAAATTCACTCAGAAT 536
Query 734 AAAAGACAGTCAAAGAAGTCATGTAAAGAGTCCATCTCCAATAAAGAAAACAAGGATGGT 793
||||| || | |||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 537 AAAAGGCACTTAAAGAAGTCATGTAAAGAGTCCTTCTCCAATAAAGAAAACAAGGATGGT 596
Query 794 GATGAACCCTGGGATTCCAAAATGGATTGGAAACCTTTGAACTTTCTGGTTGAAGTGGCA 853
||||||||||||||||||||| |||||||||| ||||| || ||||||||||||||||||
Sbjct 597 GATGAACCCTGGGATTCCAAATTGGATTGGAAGCCTTTAAATTTTCTGGTTGAAGTGGCA 656
Query 854 AATGGGACAAAGCCCTTGAAGTCTTCTGCTTCTCAAGGGTCAGGTTCAAAATCTGAGCAC 913
||| |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 657 AATAGGACTAAGCCCTTGAAGTCTTCTGCTTCTCAAGGGTCAGGCTCAAAATCTGAGCAC 716
Query 914 GCGAATGTATCTCGCAATCAATTTCAAGGGAGTAAAACCAAAACTAAGAATAAAAAGAGA 973
||||||| ||||| ||||||||||||||||||||||||||||| |||| ||||||| |||
Sbjct 717 GCGAATGCATCTCACAATCAATTTCAAGGGAGTAAAACCAAAATTAAGGATAAAAAAAGA 776
Query 974 AAATGTAAACGTGAGGATGACAAGAGTAATAATGGTGATCCTACAACATCAGAAACTGTT 1033
|||||||||||||||||||| || || | ||||||| ||||||||||||||||||||| |
Sbjct 777 AAATGTAAACGTGAGGATGA-AA-AG-AGTAATGGTAATCCTACAACATCAGAAACTGCT 833
Query 1034 ACTCCTAAAAGAATGCGTACAACTCAACGCAAAAGGTCTGCCACCACTTTAGGCGATTCA 1093
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 834 ACTCCGAAAAGAATGCGTACAACTCAACGCAAAAGGTCTGCCACCACTTTAGGCGATTCA 893
Query 1094 AGGAATTTGCCACAACCAGATGAGTCAAGTGCAAAACAGGAGAGGAGAAATGGTCCCGTT 1153
|| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 894 AGAAATTTGCCACTACCAGATGAGTCAAGTGCAAAACAGGAGAGGAGAAATGGTCCCGTT 953
Query 1154 TGGTTCTCACTTGTGGCGTCCAATGATCAGGAAGGAGGAACTTCTTTACCTCAAATTCCA 1213
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 954 TGGTTCTCACTTGTGGCGTCCAGTGATCAGGAAGGAGGAACTTCTTTACCTCAAATTCCA 1013
Query 1214 GCAAATTTTTTGAGAATAAGGGATGGAAATACAACAGTTTCTTTCATCCAAAAGTACCTC 1273
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1014 GCAAATTTTTTGAGAATAAGGGATGGAAATATTCCAGTTTCTTTCATCCAAAAGTACCTC 1073
Query 1274 ATGAGGAAGCTAGATCTCGAGAGTGAAAATGAGATAGAGATAAAGTGTATGGGAGAAGCG 1333
|||||||||||||||||||||||||||| |||||||||| ||| |||||||||||||||
Sbjct 1074 ATGAGGAAGCTAGATCTCGAGAGTGAAACTGAGATAGAGGTAAGGTGTATGGGAGAAGCA 1133
Query 1334 GTGATCCCAACGCTGACGCTTTACAATTTAGTGGATCTATGGCTCCAGAAAAGTTCAAAC 1393
|||||||| |||||||||||| |||| |||||||||||||||| ||||||||||||||
Sbjct 1134 GTGATCCCGACGCTGACGCTTCACAAAGTAGTGGATCTATGGCTGCAGAAAAGTTCAAAG 1193
Query 1394 CACCAACGGTTTGCTGCATTGGTAGGTTCTTCTGCAAAGGATTTTACGATGGTTCTTGTC 1453
||||||||||||||||||| | ||||||| || ||||||||||||| |||||| |||| |
Sbjct 1194 CACCAACGGTTTGCTGCATCGATAGGTTCCTCCGCAAAGGATTTTATGATGGTGCTTGAC 1253
Query 1454 TATGCTCGGAAGCTACCAGAG--TGCAACATGTAAA-GGACTTTAAAGACTCATGTTGTT 1510
||||||||||||||||||||| ||||||| ||||| ||||| ||||||||| |||||||
Sbjct 1254 TATGCTCGGAAGCTACCAGAGAGTGCAACAAGTAAAAGGACTATAAAGACTCTTGTTGTT 1313
Query 1511 GCAGAAGAAGATTCTGTGGAGACAGGGTAATCTTTTCTTT-TCGGTTTATGGAATCT 1566
||||||||||||||||||||||||||||||||| || ||| || ||||||||||||
Sbjct 1314 GCAGAAGAAGATTCTGTGGAGACAGGGTAATCTATT-TTTCTC--TTTATGGAATCT 1367
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67457823895
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5