BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G06780.2
Length=2465
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470701 jgi|Araly1|470701|fgenesh2_kg.1__655__AT1G06780.1 2745 0.0
> Ahg470701 jgi|Araly1|470701|fgenesh2_kg.1__655__AT1G06780.1
Length=2120
Score = 2745 bits (1486), Expect = 0.0
Identities = 1675/1763 (95%), Gaps = 26/1763 (1%)
Strand=Plus/Plus
Query 530 GTCGTAGAGAATTTATTGAAGAGTTATCCAAAATTAGATTCACGACAAATGACCTTAGAC 589
||||||| ||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 365 GTCGTAGGGAATTCATTGAAGAGTTATCCAAAATTAGATTCAAGACAAATGACCTTAGAC 424
Query 590 TTAGCGCTATTGAACATGAGGATGGAGAAGGCTTGAAGGGGCCAAGGCTCATTCTCTTCA 649
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 425 TTAGCGCTATTGAACATGAGGATGGAGAAGGCTTGAAGGGGCCAAGGCTCATGCTCTTCA 484
Query 650 AGGATGGGGAGTTTAA-T-TC--GT-C--------T-G-CTG---AAAGTGATGGTGGTA 691
|||||||||| ||||| | || || | | | ||| |||||||||||||||
Sbjct 485 AGGATGGGGACTTTAATTCTCTAGTACGGGATAATTCGTCTGATCAAAGTGATGGTGGTA 544
Query 692 ATACTTACAAAAACAGGGAAGAACAAGTGATTGTTTCACAGAAGATGACAGTTAGCTCTG 751
||| | ||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 545 ATAATCACAAAAACAGGGAAGAACAAGTGATAGTTTCACAGAAGATGACAGTTAGCTCTG 604
Query 752 ATGAAAAGGGTCAAATTCTACCAACAGTCAACCAACTTGCTAATAAAACGGATTTCAAGC 811
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 605 ATGAAAAGGGTCAAATTCTACCAACAGTCAACCAACTTGCTAATAAAACGGATTTCAAGC 664
Query 812 CCCCTTTATCTAAGGGTGAAAAGAACACAAGGGTTCAGCCCGACAGAGCAACAGATGTGA 871
||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 665 CCCCTTTATCTAAGGGTGAAAAGAACACAAGGGTTCAGCCCAATAGAGCAACAGATGTGA 724
Query 872 AAACGAAGGAGATCAGAGACAAAATTATTCAAGCTAAAGCCTACCTGAATTTCGCTCCAC 931
||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 725 AAATAAAGGAGATCAGAGACAAAATTATTCAAGCTAAAGCCTACCTGAATTTCGCTCTAC 784
Query 932 CTGGAAGTAACTCTCAAGTTGTGAAGGAGTTGAGAGGTCGG-CTGAAAGAGCTGGAACGG 990
| ||||||||||||||| |||||| ||| |||||||||||| | ||||||||||||||||
Sbjct 785 CCGGAAGTAACTCTCAAATTGTGAGGGACTTGAGAGGTCGGAC-GAAAGAGCTGGAACGG 843
Query 991 TCTGTTGGTGATGCAACAAAGGACAAGGACTTATCAAAGGGCGCTCTCCGCAGGGTGAAG 1050
|||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 844 TCTGTTGGGGATGCAACAAAGGATAAGGACTTATCAAAGGGCGCTCTTCGCAGGGTGAAG 903
Query 1051 CCCATGGAAAATGTGTTATATAAGGCTAGTCGTGTCTTTAACAATTGCCCTGCCATCGCT 1110
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 904 CCCATGGAAAATGTGTTATACAAGGCTAGTCGTGTCTTTAACAATTGCCCTGCCATTGCT 963
Query 1111 ACCAAACTCCGTGCCATGAATTATAACACAGAAGAACAAGTTCAGGCGCAGAAAAATCAA 1170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 964 ACCAAACTCCGTGCCATGAATTATAACACAGAAGAACAAGTTCAGGCGCAGAAAAATCAA 1023
Query 1171 GCAGCGTATCTAATGCAGCTTGCAGCAAGGACCACCCCAAAAGGGCTTCACTGTCTCTCA 1230
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1024 GCAGCATATCTAATGCAGCTTGCAGCAAGGACCACCCCAAAAGGGCTTCACTGTCTCTCA 1083
Query 1231 ATGCGGCTGACATCAGAATACTTTTCACTGGATCCTGAAAAAAGGCAGATGCCTAACCAG 1290
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1084 ATGCGGCTGACATCAGAATACTTCTCACTGGATCCTGAAAAAAGGCAGATGCCTAACCAG 1143
Query 1291 CAAAATTATTTTGACGCTAATTTCAATCATTATGTTGTCTTCTCTGACAATGTTTTGGCT 1350
|||||||||| |||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1144 CAAAATTATTATGACCCTAATTTCAACCATTATGTTGTCTTCTCTGACAATGTTTTGGCT 1203
Query 1351 TCTTCAGTCGTTGTTAACTCTACGATATCTTCATCAAAGGAGCCAGAAAGAATAGTCTTC 1410
|||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 1204 TCTTCAGTTGTTGTTAACTCTACGATATCTTCTTCAAAGGAGCCGGAAAGAATAGTCTTC 1263
Query 1411 CATGTCGTGACTGATTCACTTAATTACCCAGCAATCTCAATGTGGTTTCTGCTAAACATT 1470
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1264 CATGTCGTGACTGATTCACTTAATTACCCAGCAATCTCAATGTGGTTTCTGCTAAATATT 1323
Query 1471 CAAAGTAAAGCTACTATCCAAATCCTAAACATTGATGATATGGATGTCCTGCCTAGAGAT 1530
||||||| ||||| ||||||||||| ||||||||||||||||||||||| ||| || |
Sbjct 1324 CAAAGTAGGGCTACCATCCAAATCCTCAACATTGATGATATGGATGTCCTACCTCCAGCT 1383
Query 1531 TATGATCAATTACTGATGAAGCAAAACTCTAATGACCCAAGATTCATTTCTACACTCAAT 1590
||||||||||| ||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 1384 TATGATCAATTGCTGATGAAGCAAAACTCTAATGACCCAAGATTCATTTCTCCCCTCAAT 1443
Query 1591 CACGCACGCTTCTATCTCCCGGATATATTCCCGGGTTTGAACAAGATGGTACTCTTGGAC 1650
||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||
Sbjct 1444 CACGCACGCTTCTATCTGCCGGATATATTCCCGGGTTTGAACAAGATCGTACTCTTTGAC 1503
Query 1651 CATGATGTAGTTGTTCAAAGAGATTTAAGTAGACTGTGGAGCATTGATATGAAAGGAAAG 1710
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1504 CATGATGTAGTAGTTCAAAGAGATTTAAGTAGACTGTGGAGTATTGATATGAAAGGAAAG 1563
Query 1711 GTGGTTGGAGCTGTAGAGACTTGTCTTGAAGGTGAATCTTCATTTCGATCAATGAGCACA 1770
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1564 GTGGTTGGAGCTGTAGAGACTTGTCTTGAAGGTGAATCTTCATTTCGATCAATGAGCACA 1623
Query 1771 TTTATTAATTTCTCAGACACATGGGTCGCTGGGAAATTTAGTCCTAGAGCTTGCACATGG 1830
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1624 TTTATTAATTTCTCAGACACATGGGTCGCTGGGAAATTTAGTCCTAGAGCTTGCACATGG 1683
Query 1831 GCTTTCGGGATGAATCTAATTGATCTCGAAGAATGGAGAATACGGAAGTTGACTTCTACA 1890
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1684 GCGTTCGGGATGAATCTAATTGATCTCGAAGAATGGAGAATACGGAAGTTGACTTCTACG 1743
Query 1891 TACATAAAATACTTCAACCTGGGAACAAAGAGACCATTGTGGAAAGCTGGGAGCTTACCA 1950
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1744 TACATAAAATACTTCAACCTGGGAACAAAGAGACCATTGTGGAAAGCTGGGAGCTTACCA 1803
Query 1951 ATAGGTTGGTTGACTTTCTATAGGCAAACATTAGCATTGGACAAGAGATGGCATGTGATG 2010
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1804 ATAGGTTGGTTGACTTTCTATAGGCAAACATTAGCATTGGACAAGAGATGGCATGTGATG 1863
Query 2011 GGGTTAGGTCGCGAATCAGGAGTCAAAGCGGTTGACATCGAACAAGCGGCAGTTATACAC 2070
||| ||||||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 1864 GGGCTAGGTCGCGAATCAGGAATCAAAGCGGTTGACATCGAACAAGCGGCGGTTATACAC 1923
Query 2071 TACGATGGGGTCATGAAGCCGTGGTTGGACATTGGAAAAGAGAATTACAAACGTTACTGG 2130
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1924 TACGATGGAGTTATGAAGCCGTGGTTGGACATTGGAAAAGAGAATTACAAACGTTACTGG 1983
Query 2131 AACATACACGTCCCTTACCATCACACCTACTTGCAACAGTGCAATCTTCAAGCTTGATAC 2190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1984 AACATACACGTCCCTTACCATCACACCTACTTGCAACAGTGCAATCTTCAAGCTTGATAC 2043
Query 2191 GaaaaaaaaaaaaaaaaaaTCTGGCAACTTAGGTTCAGTTTCAGATTCTTTTTGTTAAAC 2250
| |||||| ||| || | ||||||||||||||||| ||||| ||||||||||||
Sbjct 2044 GGAAAAAAGCAAAT-----TCAGACAACTTAGGTTCAGTTT-AGATTATTTTTGTTAAAC 2097
Query 2251 AAGCTACTCAAGCATGATATCAA 2273
|||||||||||||||| ||||||
Sbjct 2098 AAGCTACTCAAGCATGGTATCAA 2120
Score = 468 bits (253), Expect = 1e-130
Identities = 344/384 (90%), Gaps = 21/384 (5%)
Strand=Plus/Plus
Query 114 ATGAAGAAGCTCTGAATCTAAAACTCCTCTC-TCCGACCCCAAATCCAGAAATTCAAGCG 172
||||||||||||||||||||||||| |||| |||||||||||| ||||||||| |||||
Sbjct 1 ATGAAGAAGCTCTGAATCTAAAACTTGTCTCTTCCGACCCCAAACCCAGAAATTGAAGCG 60
Query 173 AGGAATAGAATCTCCCACTAGAGAAAAGCAATCCCAGAAACCCTAAGTTCTTCA-CGTTT 231
| ||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct 61 AAGAATAGAATCTCCCACTAGAGGAAAGCAATCCCAGAAACCCTAAGTTCTTCATCGTTT 120
Query 232 CGTTCTTTTGCTTGTTGATCAAGCAGGATATCTCCGAGATTTGTGAGTCTCTTGCTACTT 291
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 121 CGTTCTTTTGCTTGTTGATCAAGCAGGAAATCTCCGAGATTTGTGAGTCTCTTGCTACTT 180
Query 292 CTTCCTGGAGAACGATTCAGGGTTTGATGTGATAAGAATAGT-CATCGAGGAAGATAGAT 350
||||||||||||||| | | | | || | |||| | |||||||||||||||
Sbjct 181 CTTCCTGGAGAACGAG--A---T---A-G-GA-A----TAGTTC-TCGAGGAAGATAGAT 224
Query 351 TTGGG-GAtttttttttATTTGTAGATTCATGAAACAAATTCGTCGATGGCAGAGGATTT 409
| ||| || |||| ||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 225 TCGGGAGAGAATTTTCGATT-GTATATTCATGAAACAAATTCGTCGATGGCAGAGGATTT 283
Query 410 TGATCCTCGCTCTGCTATCGATATCTGTATTCGCTCCGCTTATTTTCGTATCGAATCGGC 469
|||||||| ||||||||||||||||||| |||||||| ||||||||||| ||||||||||
Sbjct 284 TGATCCTCTCTCTGCTATCGATATCTGTCTTCGCTCCTCTTATTTTCGTCTCGAATCGGC 343
Query 470 TTAAGAGCATCACTCCCGTTGGTC 493
||||||||||||||||||||||||
Sbjct 344 TTAAGAGCATCACTCCCGTTGGTC 367
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92902107555
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5