BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G06790.1
Length=910
Score E
Sequences producing significant alignments: (Bits) Value
Ahg910364 jgi|Araly1|910364|Al_scaffold_0001_618 1020 0.0
> Ahg910364 jgi|Araly1|910364|Al_scaffold_0001_618
Length=615
Score = 1020 bits (552), Expect = 0.0
Identities = 595/616 (97%), Gaps = 2/616 (0%)
Strand=Plus/Plus
Query 136 ATGTTTTATCTTAGCGAGCTAGAACATTCACTAAGAGTGCCTCCGCATCTACTTAATCTC 195
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 1 ATGTTTTATCTTAGCGAGCTTGAACATTCACTAAGAGTGCCTCCGCATCTACTTAACCTC 60
Query 196 CCTCTCGAAGATGCCATTAAGTCAGTGCTTCAAAATGTGTTCTTGGACAAGGTTTTAGCT 255
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CCTCTCGAAGATGCCATTAAGTCAGTGCTTCAAAATGTGTTCTTGGACAAGGTTTTAGCT 120
Query 256 GATTTGGGGCTTTGTGTATCTATTTACGACATTAAATCAGTAGAAGGAGGGTTTGTGTTA 315
|||||||||||||| |||||| ||||||||||||||||| |||||||||||||||| |||
Sbjct 121 GATTTGGGGCTTTGCGTATCTGTTTACGACATTAAATCAATAGAAGGAGGGTTTGTTTTA 180
Query 316 CCCGGTGATGGTGCTGCGACCTATAAGGTAGGTCTTAGAATTGTTGTGTTCCGTCCATTT 375
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 181 CCCGGTGATGGTGCTGCGACCTATAAGGTACGTTTTAGAATTGTTGTGTTCCGTCCATTT 240
Query 376 GTTGGTGAGGTCATAGCTGCAAAGTTCAAAGAATCTGACGCCAATGGCTTGCGCTTAACA 435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GTTGGTGAGGTCATAGCTGCAAAGTTCAAAGAATCTGACGCCAATGGCTTGCGCTTAACA 300
Query 436 CTTGGATTCTTTGACGATATTTATGTGCCTGCTCCACTTATGCCGAAACCCAACCGCTGT 495
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CTTGGATTTTTTGACGATATTTATGTGCCTGCTCCACTTATGCCGAAACCCAACCGCTGT 360
Query 496 GAGCCTGACCCTTATAATAGGAAGCAAATGATATGGGTGTGGGAATATGGAGAACCGAAA 555
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct 361 GAGCCTGACCCTTATAATAAGAAGCAAATGATATGGGTGTGGGAATATGGAGAACCGTTA 420
Query 556 GAAGACTAT-ATTGTTGACGATGCCTGTCAGATCAAGTTTCGAGTAGAGAGCATCAGCTA 614
||||||| | || | |||||| |||||||||||||||||||||||||||||||||||||
Sbjct 421 GAAGACT-TCATAATCGACGATTCCTGTCAGATCAAGTTTCGAGTAGAGAGCATCAGCTA 479
Query 615 TCCATCAGTTCCAACTGAGCGAGCAGAGGACGCAAAGCCTTTTGCTCCAATGGTGGTCAC 674
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 TCCATCAGTTCCAACTGAGCGAGCAGAGGACGCAAAGCCTTTTGCTCCAATGGTGGTCAC 539
Query 675 TGGGAATATGGATGATGATGGTTTGGGTCCTGTTTCTTGGTGGGATTCTTATGAACAGGT 734
||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | |
Sbjct 540 TGGGAATATGGATGAGGATGGTTTGGGTCCTGTTTCTTGGTGGGATTCTTATGAACTGAT 599
Query 735 TGATCAAGAAGAGTGA 750
||||||||||||||||
Sbjct 600 TGATCAAGAAGAGTGA 615
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33738781545
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5