BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G06820.1
Length=1999
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470704 jgi|Araly1|470704|fgenesh2_kg.1__658__AT1G06820.1 2863 0.0
> Ahg470704 jgi|Araly1|470704|fgenesh2_kg.1__658__AT1G06820.1
Length=1779
Score = 2863 bits (1550), Expect = 0.0
Identities = 1715/1793 (96%), Gaps = 17/1793 (1%)
Strand=Plus/Plus
Query 8 CAACCATGGATTTGTGTTTTCAAAATCCCGTAAAGTGTGGTGA-TCGTTTGTTCTCCGCA 66
|||||||| |||||||||||||||||||||||||||||||| | | |||||||||||||
Sbjct 2 CAACCATGAATTTGTGTTTTCAAAATCCCGTAAAGTGTGGT-AGTTGTTTGTTCTCCGCG 60
Query 67 TTGAATACCTCTACGTATTACAAGCTGGGTACTTCGAATTTAGGGTTTAATGGTCCAGTT 126
|||| || | || || |||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 61 TTGATTA-C-CT-CGAATTACAAGCTGGGTACTTGGAATTTAGGGTTTAATGGTCGAGTT 117
Query 127 TTAGAGAATCGGAAGAAGAAGAAGAAGCTGCCTCGTATGGTTACAGTGAAATCCGTTTCT 186
||||||||||||||||| | | |||| |||| | |||||||||||||||||||||||
Sbjct 118 TTAGAGAATCGGAAGAA-CA-TA-AAGCCGCCT-G--TGGTTACAGTGAAATCCGTTTCT 171
Query 187 TCAAGTGTGGTTGCTAGTACCGTACAAGGGACGAAGAGAGATGGAGGAGAGAGTCTGTAC 246
||||||||||||| |||||||| | ||||| ||||||||| || | | ||| |||||
Sbjct 172 TCAAGTGTGGTTG---GTACCGTAGAGGGGACCAAGAGAGAT-GA-AACA-AGTGTGTAC 225
Query 247 GACGCCATTGTTATCGGTTCTGGGATTGGTGGATTAGTTGCTGCGACTCAGCTAGCTGTG 306
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 226 GACGCCATTGTTATCGGTTCTGGGATTGGTGGATTGGTTGCTGCGACTCAGCTAGCTGTT 285
Query 307 AAAGAAGCTAGGGTTTTAGTTCTTGAGAAGTATTTGATTCCTGGTGGCAGCTCTGGTTTT 366
||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |
Sbjct 286 AAAGAAGCTAGGGTTTTGGTTCTTGAGAAGTATTTGATTCCTGGTGGGAGCTCTGGTTAT 345
Query 367 TACGAGAGAGATGGATATACTTTTGATGTTGGCTCTTCTGTCATGTTTGGTTTCAGCGAT 426
||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 346 TACGAAAGAGATGGTTATACTTTTGATGTTGGCTCTTCTGTCATGTTTGGTTTCAGTGAT 405
Query 427 AAGGGGAACCTAAACTTGATAACTCAGGCATTGAAGGCAGTTGGTCGTAAGATGGAGGTT 486
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 406 AAGGGGAACCTAAACTTGATTACTCAGGCATTGAAGGCAGTTGGTCGGAAGATGGAGGTT 465
Query 487 ATACCTGATCCTACCACTGTCCATTTCCATCTCCCCAATAATCTTTCTGTTCGGATTCAT 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 466 ATACCTGATCCTACCACTGTCCATTTCCATCTCCCCAATAATCTTTCTGTTCGGATTCAT 525
Query 547 AGGGAATACGATGATTTCATCGCTGAGCTTACGAGCAAGTTTCCTCACGAAAAGGAAGGG 606
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 526 AGAGAATACGATGATTTCATCGCTGAGCTTACCAGCAAGTTTCCTCACGAAAAGGAAGGG 585
Query 607 ATCCTTGGATTCTATGGTGACTGTTGGAAGATCTTCAACTCATTGAACTCCCTGGAACTA 666
||||| | ||||||||| | ||| |||||||||||||||||||||||||| |||||||||
Sbjct 586 ATCCTCGCATTCTATGGCGTCTGCTGGAAGATCTTCAACTCATTGAACTCTCTGGAACTA 645
Query 667 AAGTCACTAGAAGAGCCTATCTACCTTTTTGGACAGTTCTTTCAGAAGCCGCTTGAATGC 726
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 646 AAGTCTCTAGAAGAGCCTATCTACCTTTTTGGACAGTTCTTTCAGAAGCCGCTTGAATGC 705
Query 727 TTGACACTCGCTTATTACTTGCCCCAAAATGCTGGGGCTATAGCTCGGAAGTACATAAAG 786
|||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 706 CTGACACTCGCTTATTACTTGCCCCAAAATGCTGGAGCTATAGCTCGCAAGTACATAAAG 765
Query 787 GATCCTCAATTATTGTCTTTCATTGATGCAGAGTGTTTCATTGTGAGCACAGTCAATGCT 846
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 766 GATCCTCAATTATTGTCTTTCATTGATGCAGAGTGTTTCATCGTGAGCACAGTCAATGCT 825
Query 847 TTGCAGACGCCAATGATCAATGCAAGTATGGTTTTATGTGACAGGCACTATGGAGGAATT 906
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 826 TTGCAGACGCCAATGATCAATGCAAGTATGGTTTTATGTGACAGGCACTATGGAGGAATT 885
Query 907 AACTACCCGGTTGGTGGAGTTGGTGGGATTGCCAAGTCTTTGGCAGAAGGGCTTGTTGAT 966
||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct 886 AACTACCCGGTTGGTGGAGTTGGTGGGATTGCCAAGTCTCTGGCAGAAGGACTTGTTGAT 945
Query 967 CAAGGCAGTGAAATACAATACAAGGCTAATGTAAAAAGTATAATACTTGATCATGGAAAG 1026
|||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 946 CAAGGCAGTGAAATACTCTACAAGGCTAATGTAAAAAGTATAATACTTGATAATGGAAAG 1005
Query 1027 GCAGTTGGTGTAAGGCTAGCAGATGGAAGAGAATTTTTCGCTAAGACGATAATTTCAAAT 1086
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1006 GCGGTTGGTGTAAGGCTAGCAGATGGAAGAGAATTTTTCGCTAAGACGATAATTTCAAAT 1065
Query 1087 GCTACAAGATGGGATACGTTTGGGAAGCTGTTAAAAGGAGAAAAGCTTCCTAAAGAAGAA 1146
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1066 GCTACAAGATGGGATACGTTTGGGAAGCTGTTAAAAGGAGAAAAGCTTCCTAAAGCAGAA 1125
Query 1147 GAAAATTTCCAGAAAGTGTACGTCAAGGCTCCATCATTTCTTTCAATTCACATGGGTGTT 1206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1126 GAAAATTTCCAGAAAGTGTACGTCAAGGCTCCATCATTTCTTTCAATTCACATGGGTGTT 1185
Query 1207 AAAGCAGAGGTTCTCCCTCCAGATACAGATTGCCATCATTTTGTGCTCGAGGACGATTGG 1266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1186 AAAGCAGAGGTTCTCCCTCCAGATACAGATTGCCATCATTTTGTGCTCGAGGACGATTGG 1245
Query 1267 AAGAATCTGGAGGAGCCTTATGGCAGTATTTTCCTCAGCATTCCAACCATTCTTGATTCA 1326
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 1246 AAGAATCTGGAGGAGCCTTATGGCAGTATATTCCTCAGCATTCCAACCATTCTTGATCCA 1305
Query 1327 TCTTTGGCTCCAGATGGTCGACATATACTTCACATATTTACAACTTCGTCCATTGAGGAT 1386
||| |||||||| ||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 1306 TCTCTGGCTCCAAATGGTCGACATATACTTCATATATTTACAACTTCGTCCATCGAGGAT 1365
Query 1387 TGGGAGGGACTCCCTCCAAAAGAGTATGAGGCGAAAAAGGAAGATGTGGCAGCTAGAATA 1446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1366 TGGGAGGGACTCCCTCCAAAAGAGTATGAGGCGAAAAAGGAAGATGTGGCAGCTAGAATA 1425
Query 1447 ATCCAGAGACTAGAGAAAAAATTGTTTCCAGGGCTCAGTTCATCTATTACGTTCAAGGAG 1506
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1426 ATCCAGAGACTAGAGAAAAAACTGTTTCCAGGGCTCAGTTCATCTATTACGTTCAAGGAG 1485
Query 1507 GTGGGAACACCAAGAACACACAGACGATTTCTTGCGAGGGATAAGGGAACTTATGGGCCA 1566
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1486 GTGGGAACACCAAGAACACACAGACGGTTTCTTGCGAGGGATAAGGGAACTTATGGGCCA 1545
Query 1567 ATGCCTAGAGGAACCCCGAAAGGTTTATTAGGCATGCCATTCAATACAACGGCTATAGAT 1626
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 1546 ATGCCTAGAGGAACCCCAAAAGGTTTATTAGGCATGCCGTTCAATACAACGGCTATAGAT 1605
Query 1627 GGTCTATACTGCGTGGGGGATAGTTGTTTTCCTGGCCAGGGAGTTATAGCTGTGGCTTTT 1686
|||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 1606 GGTCTATACTGCGTGGGGGATAGTTGCTTTCCTGGTCAGGGAGTTATAGCTGTGGCTTTC 1665
Query 1687 TCAGGAGTGATGTGTGCTCATCGGGTAGCTGCTGATATTGGGCTTGAGAAGAAATCACGA 1746
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1666 TCAGGAGTGATGTGTGCTCATCGGGTAGCTGCTGATATTGGGCTTGAGAAGAAATCACGG 1725
Query 1747 GTACTTGATGTTGGCCTTCTTGGTTTACTTGGTTGGCTAAGGACACTCGCATA 1799
|||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1726 GTACTTGATGTTGGCCTTCTTGGTTTACTTGGGTGGCTAAGGACACTCGCATA 1778
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75152053385
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5