BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G06830.1

Length=505
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg470705 jgi|Araly1|470705|fgenesh2_kg.1__659__AT1G06830.1          706    0.0  


> Ahg470705 jgi|Araly1|470705|fgenesh2_kg.1__659__AT1G06830.1
Length=498

 Score =  706 bits (382),  Expect = 0.0
 Identities = 463/501 (92%), Gaps = 9/501 (2%)
 Strand=Plus/Plus

Query  11   CTTCTTCTTCTTCACCTTATGCAAGATAATGGACAAAGTTATGAGAATGTCGTCCGAAAA  70
            |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct  1    CTTCTTCTTCTTCACCTTATTCAAGAAAATGGACAAAGTTATGAGAATGTCGTCCGAAAA  60

Query  71   AGGGGTGGTTATATTTACCAAGAGCTCCTGTTGTTTGTCCTATGCGGTTCAAGTTCTCTT  130
            ||||||||||||||||| ||||||||| ||||||||||||||||| ||||||||||||||
Sbjct  61   AGGGGTGGTTATATTTAGCAAGAGCTCTTGTTGTTTGTCCTATGCAGTTCAAGTTCTCTT  120

Query  131  CCAAGATCTTGGTGTTAACCCTAAGATCCACGAGATTGATAAGGACCCTGAATGCCGAGA  190
            |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct  121  CCAAGATCTTGGGGTTAACCCTAAGATCCACGAGATTGATAAGGACCCCGAATGCCGAGA  180

Query  191  GATAGAGAAGGCTCTTATGAGGCTAGGGTGTTCAAAGCCGGTCCCAGCCGTCTTCATTGG  250
            |||||||||||| || |||||||||||||||||||| |||||||||||||||||||||||
Sbjct  181  GATAGAGAAGGCCCTAATGAGGCTAGGGTGTTCAAAACCGGTCCCAGCCGTCTTCATTGG  240

Query  251  TGGCAAGCTCGTTGGTTCGACCAACGAAGTAATGTCCATGCACCTAAGCAGCTCGCTCGT  310
            ||||||||||||||||||||| |||||||||||||| |||||| |||||||||| || ||
Sbjct  241  TGGCAAGCTCGTTGGTTCGACAAACGAAGTAATGTCGATGCACTTAAGCAGCTCACTTGT  300

Query  311  TCCCCTAGTGAAGCCATATTTATGTTAAACAACAACGAAGGA-G-TATTTATG-AT-A--  364
            ||||||||||||||||||| | ||||||||||||| ||| || | | |||||  || |  
Sbjct  301  TCCCCTAGTGAAGCCATATCTGTGTTAAACAACAAAGAAAGAAGGTGTTTATATATGAAA  360

Query  365  TTAATTAGCTATGTATATGTTATTCAATAAGGAACAAAATTGAGCCAAATCTTTGTAATG  424
            |||||||| |||| |||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct  361  TTAATTAGTTATGGATATGTCATTCAATAAGGAAGAAAATTGAGCCAAATCTTTGTAATG  420

Query  425  TGTTTTTTGGTATTATTATTGGTTGTATAACATTGGGAAAGTGTACGTATAATTATAAGA  484
            ||||||||||||||||||||| |||| |||| |||||||||||  ||||||||| |||||
Sbjct  421  TGTTTTTTGGTATTATTATTGATTGTGTAAC-TTGGGAAAGTG--CGTATAATTGTAAGA  477

Query  485  CTGTTATATTGATTCGAAGGT  505
             ||||||||||||||||||||
Sbjct  478  TTGTTATATTGATTCGAAGGT  498



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18352838309


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5