BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G06850.1
Length=1430
Score E
Sequences producing significant alignments: (Bits) Value
Ahg910369 jgi|Araly1|910369|Al_scaffold_0001_623 1456 0.0
> Ahg910369 jgi|Araly1|910369|Al_scaffold_0001_623
Length=987
Score = 1456 bits (788), Expect = 0.0
Identities = 890/939 (95%), Gaps = 8/939 (1%)
Strand=Plus/Plus
Query 262 CCGATCCGATTCCATCTTCTTCCTTCCACCGCCGATCTCGCTCCGACGATATGTCCATGT 321
||||||| || ||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 56 CCGATCCAATCCCATCTTCTTCCTTCCACCGCCGATCTCGCTCCGATGATATGTCGATGT 115
Query 322 TCATGTTCATGGATCCCCTCTCCTCCGCCGCACCACCTTCCTCCGACGACCTTCCCTCCG 381
||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct 116 TCATGTTCATGGATCCCCTCTCCTCCGGCGCACCACCTTCCTCCGATGACCTTCCCTCCG 175
Query 382 ACGACGATCTCTTCTCTTCTTTCATCGATGTCGATAGCCTCACCTCTAATCCCAATCCCT 441
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 176 ACGACGATCTCTTCTCTTCTTTCATCGACGTCGATAGCCTCACCTCTAATCCCAACCCCT 235
Query 442 TTCAAAAtccttccctctcctccaactccgtttccggcgctgctaatcctcctcctcctc 501
| | ||||| ||||||||||||| ||||||||| | | ||| || ||||||||| |
Sbjct 236 TCCCTAATCCCTCCCTCTCCTCCATTTCCGTTTCC-G-G-TGCCAA---TCCTCCTCCGC 289
Query 502 cttcctctcgtcctcGCCACCGTCACAGCAATTCCGTTGACGCTGGATGCGCCATGTATG 561
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 290 CGTCCTCTCGTCCTCGCCACCGTCACAGCAATTCCGTTGACGCTGGATGCGCCATGTATG 349
Query 562 CCGGTGATATCATGGACGCTAAGAAAGCTATGCCTCCTGAAAAACTCTCTGAGCTTTGGA 621
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 350 CAGGTGAAATCATGGACGCTAAGAAAGCTATGCCTCCTGAAAAACTCTCTGAGCTTTGGA 409
Query 622 ACATCGATCCCAAACGCGCCAAAAGGATTCTAGCGAATCGACAATCTGCAGCTCGATCCA 681
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 410 ACATCGATCCCAAACGCGCCAAAAGGATTTTAGCGAATCGACAATCTGCAGCTCGATCCA 469
Query 682 AAGAGAGAAAAGCTCGATACATTCAAGAACTTGAGCGCAAAGTTCAATCTCTTCAAACCG 741
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 470 AAGAGAGAAAAGCTCGATACATTCAAGAACTTGAGCGTAAAGTTCAATCTCTTCAAACCG 529
Query 742 AAGCTACCACTCTCTCTGCTCAGCTTACTCTCTACCAGAGAGACACAAATGGACTAGCAA 801
||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||
Sbjct 530 AAGCTACCACTCTCTCTGCTCAGCTCACCCTCTACCAGAGAGATACAAATGGACTAGCAA 589
Query 802 ACGAAAACACAGAGCTGAAACTTAGGTTGCAAGCAATGGAACAACAAGCTCAGCTTCGTA 861
|||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||
Sbjct 590 ACGAAAACACAGAGCTGAAACTCAGGTTACAAGCAATGGAGCAACAAGCTCAGCTTCGTA 649
Query 862 ATGCTTTAAACGAAGCGTTGAGGAAAGAAGTTGAAAGGATGAAGATGGAGACAGGAGAAA 921
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 650 ATGCTCTAAACGAAGCGTTGAGGAAAGAAGTTGAAAGGATGAAGATGGAGACAGGAGAAA 709
Query 922 TCTCTGGTAATTCAGATTCGTTTGATATGGGAATGCAGCAGATTCAGTATTCTTCCTCAA 981
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 710 TCTCTGGTAATTCAGATTCCTTTGATATGGGAATGCAGCAGATTCAGTATTCTTCCTCAA 769
Query 982 CTTTCATGGCTATTCCACCATATCATGGCTCAATGAACCTCCATGATATGCAGATGCATT 1041
| |||||||| || |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 770 CGTTCATGGCAATCCCACCATATCATGGCTCAATGAACGTCCATGATATGCAGATGCATA 829
Query 1042 CTAGTTTCAATCCTATGGAGATGTCCAATTCTCAAAGCGTGTCGGACTTTCTACAGAACG 1101
||||||||||||||||||||||||||||| | |||||||||||||| |||||||||||||
Sbjct 830 CTAGTTTCAATCCTATGGAGATGTCCAATCCGCAAAGCGTGTCGGAGTTTCTACAGAACG 889
Query 1102 GCCGAATGCAAGGGCT-GGAGATTAGTAGCAATAGCTCAAGCTTAGTCAAATCTGAAGGA 1160
| ||| |||||||||| || ||| ||||||||||||||||||||||||||||||||||||
Sbjct 890 GGCGATTGCAAGGGCTAGG-GATAAGTAGCAATAGCTCAAGCTTAGTCAAATCTGAAGGA 948
Query 1161 CCTTCTCTCTCTGCTAGTGAGAGTAGCTCTGCCTATTGA 1199
||||||||||||||||||||||| |||||||||||||||
Sbjct 949 CCTTCTCTCTCTGCTAGTGAGAGCAGCTCTGCCTATTGA 987
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53478703980
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5