BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G06870.1 Length=1687 Score E Sequences producing significant alignments: (Bits) Value Ahg470709 jgi|Araly1|470709|fgenesh2_kg.1__663__AT1G06870.1 2257 0.0 Ahg481956 jgi|Araly1|481956|fgenesh2_kg.4__1016__AT2G30440.1 625 4e-178 > Ahg470709 jgi|Araly1|470709|fgenesh2_kg.1__663__AT1G06870.1 Length=1592 Score = 2257 bits (1222), Expect = 0.0 Identities = 1511/1640 (92%), Gaps = 61/1640 (4%) Strand=Plus/Plus Query 29 AGACTCTCTCTGCTTTCGACCAAAACCTTCTCCTCTCCTCTGGGAGATCTCCATCTTCTT 88 |||||||||||||| |||||| ||||||||||||||||||||||||||||||| |||||| Sbjct 2 AGACTCTCTCTGCTATCGACC-AAACCTTCTCCTCTCCTCTGGGAGATCTCCAGCTTCTT 60 Query 89 CGCTTCTTCGCTTCCCCGCCTGAAACAATTACTCGATCTCGCCGGCGGAACAAGCTCTCC 148 ||| |||||||| | | |||||||||||||||||| | ||| ||||| Sbjct 61 CGCGCCTTCGCTT------C-----C----ACTCGATCTCGCCGGCGGCATAAGATCTCC 105 Query 149 GTTTCTCTTTCCGGCAGATCGATTCTTCCAA-TTCCTTATTCCTTT-C-TAGGTCTTCCT 205 |||| ||||||||||||||||| |||||||| |||| || ||| | |||| ||| Sbjct 106 GTTTATCTTTCCGGCAGATCGACTCTTCCAATTTCC-GGTTAATTTCCTTAGGCCTT--A 162 Query 206 TAAGAAACCCTTACTTTCTTCAAAATCTGCATTT-ATGGCGATTAGGGTTACCTTCACCT 264 || |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| Sbjct 163 GAAAAAACCCTTACTTTCATCAAAATCTGCATTTCATGGCGATTAGGGTTACCTTCACCT 222 Query 265 ACTCCAGCTATGTTGCTAGGAGCATTGCTTCATCCGCCGGGACTCGTGTCGGTACCGGCG 324 ||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| Sbjct 223 ACTCCAGCTATGTTGCTAGGAGCATTGCTTCTTCCGCCGGGACTCGTGTCGGCACCGGCG 282 Query 325 ACGTTAGATCATGCTTCGAAACATGGGTTCGTCCCAGGTTCTGCGGCCACAATCAGATAC 384 ||||| | |||||||||||| |||||||||||||||| |||||||||||||||||||||| Sbjct 283 ACGTTCGCTCATGCTTCGAATCATGGGTTCGTCCCAGATTCTGCGGCCACAATCAGATAC 342 Query 385 CAGATATTGTTGATAAATCTCCCGGATCCAACACATGGGGTCCAAGCTCAGGCCCTCGTG 444 | ||||||| ||||||||||||||||||||||||| | ||||| ||||||||| Sbjct 343 CCGATATTGCTGATAAATCTCCCGGATCCAACACA-----T----GCTCAAGCCCTCGTG 393 Query 445 CTCGACCAGCTTCATCAATGTATAGCACCATTGCGAGGGAAATCCTCGAAGAAGGCTGCA 504 |||||||||||||||| |||||||||||||||||||||||| ||||||||||||| ||| Sbjct 394 CTCGACCAGCTTCATCGATGTATAGCACCATTGCGAGGGAACTCCTCGAAGAAGGAAGCA 453 Query 505 AGAGTCCACTTGTCTTGGGTATGATCTCTCTCATGAATTTGACTGGA---GCTCCACAGT 561 ||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||||| Sbjct 454 AGAGTCCACTTGTGTTGGGTATGATCTCTCTCATGAATTTGACAGGAGCTGCTCCACAGC 513 Query 562 TTTCGGGTATGACCGGTCTCGGGATCTCTCCCTTTAAGACTTCTTCTGTCATCCCGTTCC 621 | ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 514 TCTCGGGTATGACCGGTCTCGGGATCTCTCCCTTTAAGACTTCTTCTGTTATCCCGTTCC 573 Query 622 TTAGGGGTTCCAAGTGGATGCCTTGTAGTATTCCGGCGACGTTATCAACGGATATTGCTG 681 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 574 TTAGGGGCTCCAAGTGGATGCCTTGTAGTATTCCGGCGACGTTATCAACGGATATTGCTG 633 Query 682 AGGTTGATAGAGGAGGAAAGGTCTGTGATCCTAAAGTGAAGTTGGAGTTGAGTGATAAAG 741 |||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| Sbjct 634 AGGTTGATAGAGGAGGAAAGGTGTGTGATGCTAAAGTGAAGTTGGAGTTGAGTGATAAAG 693 Query 742 TCTCGAATGGTGGAAACGGATGGGTTAATAAGCTGTTGAATATCTGCTCGGAGGATGCTA 801 |||| |||| ||| ||||| |||||||||||||||||||||||||||||||| ||||||| Sbjct 694 TCTCTAATGCTGGTAACGGTTGGGTTAATAAGCTGTTGAATATCTGCTCGGAAGATGCTA 753 Query 802 AGGCTGCTTTCACGGCGGTTACTGTTTCTCTCCTTTTCCGATCGGCTTTGGCCGAGCCAA 861 |||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| Sbjct 754 AGGCAGCTTTCACGGCGGTTACTGTTTCTCTCCTTTTCCGATCGGCGTTGGCTGAGCCAA 813 Query 862 AGTCTATACCTTCAACATCTATGCTTCCTACTCTCGATGTGGGTGATCGTGTTATAGCCG 921 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | Sbjct 814 AGTCTATACCTTCAACATCTATGCTTCCTACTCTCGATGTGGGTGATCGTGTTATGGCTG 873 Query 922 AGAAGGTCTCATACTTTTTCAGGAAGCCAGAGGTTTCAGACATAGTTATCTTCAAGGCTC 981 |||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 874 AGAAGGTCTCATACCTTTTCAGAAAGCCAGAGGTTTCAGACATAGTTATCTTCAAGGCTC 933 Query 982 CTCCTATTTTGGTGGAACATGGTTACAGTTGTGCTGATGTTTTCATAAAAAGGATAGTTG 1041 |||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| Sbjct 934 CTCCTATTTTGGTGGAACATGGTTACAGTTGTACTGATGTTTTTATAAAAAGGATAGTTG 993 Query 1042 CTAGCGAAGGTGACTGGGTTGAAGTTTGTGATGGAAAGCTCTTAGTAAATGACACTGTTC 1101 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 994 CTAGCGAAGGTGACTGGGTTGAAGTTTGTGATGGAAAGCTCTTAGTAAATGACACTGTTC 1053 Query 1102 AAGCAGAGGATTTTGTCTTAGAGCCAATTGACTATGAAATGGAACCAATGTTTGTCCCTG 1161 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1054 AAGCAGAGGATTTTGTCTTAGAGCCAATTGACTATGAAATGGAACCAATGTTTGTCCCTG 1113 Query 1162 AAGGTTATGTCTTCGTCCTAGGAGACAACCGCAACAAAAGCTTTGATTCTCATAACTGGG 1221 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1114 AAGGTTATGTCTTCGTCCTAGGAGACAACCGCAACAAAAGCTTTGATTCTCATAACTGGG 1173 Query 1222 GTCCACTTCCAATAAAGAACATCATAGGGAGATCTGTGTTTCGCTATTGGCCACCAAGCA 1281 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1174 GTCCACTTCCAATAAAGAACATCATAGGGAGATCTGTATTTCGCTATTGGCCACCAAGCA 1233 Query 1282 AAGTGTCAGACATAATACACCATGAACAAGTTAGCCAAAAGAGAGCTGTTGATGTATCTT 1341 ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |||| Sbjct 1234 AAGTGTCAGACATCATACACCATGAACAAGTTATCCAAAAGAGAGCTGTTGATGTTTCTT 1293 Query 1342 GACCAACGCAGATGGTATCTTAGGATTAAGCAGAAAATTTGATTAGATGAGCTGTGCCAT 1401 |||||| ||||||||| |||||||||||||||||||||||||||||| |||||||||||| Sbjct 1294 GACCAAAGCAGATGGT-TCTTAGGATTAAGCAGAAAATTTGATTAGACGAGCTGTGCCAT 1352 Query 1402 GCCAACCATTTTGGCGCTGAAGGCAACAGAGCAATTCTTTCTTCCTGTCTAGGCTTG-AT 1460 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || Sbjct 1353 GCCAACCATTTTGGCGCTGAAGGCAACAGAGCAATTTTTTCTTCCTGTCTAGGCTTCTAT 1412 Query 1461 GGCGGACATGGAATGCACTGGGAAATCCATATAAAAAGAACAAGAAAATTGATATTTTTG 1520 ||||||||||||||||| ||||||||||||| ||||| | || | || | Sbjct 1413 GGCGGACATGGAATGCAATGGGAAATCCATA-AAAAA-A---------TT--T-TT---G 1455 Query 1521 CTTT-GAttttttttGATGTGTTGAAACCTAAATGCATCCAGTGTAATTGGCAGTAGCTG 1579 |||| |||| ||| |||||||||||||||||||||| ||||||||||||||||| |||| Sbjct 1456 CTTTTGATTCTTT--GATGTGTTGAAACCTAAATGCAACCAGTGTAATTGGCAGTCGCTG 1513 Query 1580 TCAAACATAAAAGGGTAAACTTTCTTTTTTGAGTATT-T--AATGTGAAGAATCCTGTAA 1636 |||||||||||||||| |||| ||||||| ||||||| | |||||||| |||||||||| Sbjct 1514 TCAAACATAAAAGGGTGAACTATCTTTTT-GAGTATTATCTAATGTGAAAAATCCTGTAA 1572 Query 1637 ACGTTCTGTTCTCAAGCTCT 1656 |||||||||||||||||||| Sbjct 1573 ACGTTCTGTTCTCAAGCTCT 1592 > Ahg481956 jgi|Araly1|481956|fgenesh2_kg.4__1016__AT2G30440.1 Length=1598 Score = 625 bits (338), Expect = 4e-178 Identities = 506/588 (86%), Gaps = 8/588 (1%) Strand=Plus/Plus Query 749 TGGTGGAAACGGATGGGTTAATAAGCTGTTGAATATCTGCTCGGAGGATGCTAAGGCTGC 808 ||| |||| ||||||||||||||||| |||||||| || || |||||||| |||||||| Sbjct 754 TGGAGGAAGTGGATGGGTTAATAAGCTTTTGAATATTTGTTCTGAGGATGCAAAGGCTGC 813 Query 809 TTTCACGGCGGTTACTGTTTCTCTCCTTTTCCGATCGGCT-TTGGCCGAGCCAAAGTCTA 867 |||||||||||||||||||||| ||||||||||||||||| ||| | ||||||||||| | Sbjct 814 TTTCACGGCGGTTACTGTTTCTATCCTTTTCCGATCGGCTCTTG-CGGAGCCAAAGTCGA 872 Query 868 TACCTTCAACATCTATGCTTCC-TACTCTCG-ATGTGGGTGATCGTGTTATAGCCGAGAA 925 | ||||| || |||||| | || ||| || | |||| ||||| || ||||| || ||||| Sbjct 873 TTCCTTCCACGTCTATG-TACCCTAC-CTTGGATGTCGGTGACCGCGTTATGGCGGAGAA 930 Query 926 GGTCTCATACTTTTTCAGGAAGCCAGAGGTTTCAGACATAGTTATCTTCAAGGCTCCTCC 985 |||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||| Sbjct 931 GGTCTCGTACTTTTTCAGGAAGCCAGAGGTTTCAGATATAGTGATCTTCAAGGCTCCTCC 990 Query 986 TATTTTGGTGGAACATGGTTACAGTTGTGCTGATGTTTTCATAAAAAGGATAGTTGCTAG 1045 || ||| | ||| ||| |||||||| |||||| |||||||| |||||||| || || Sbjct 991 AATCTTGCTTGAATATGATTACAGTTCCAATGATGTATTCATAAAGAGGATAGTGGCAAG 1050 Query 1046 CGAAGGTGACTGGGTTGAAGTTTGTGATGGAAAGCTCTTAGTAAATGACACTGTTCAAGC 1105 ||||||||||||||||||||| ||||||| |||||||| || ||||||| ||| |||| Sbjct 1051 TGAAGGTGACTGGGTTGAAGTTCGTGATGGGAAGCTCTTTGTGAATGACATTGTGCAAGA 1110 Query 1106 AGAGGATTTTGTCTTAGAGCCAAT-TGACTATGAAATGGAACCAATGTTTGTCCCTGAAG 1164 ||| |||||||||||||||||||| | | |||||||||||||||||||||||||| ||| Sbjct 1111 AGAAGATTTTGTCTTAGAGCCAATGTCA-TATGAAATGGAACCAATGTTTGTCCCCAAAG 1169 Query 1165 GTTATGTCTTCGTCCTAGGAGACAACCGCAACAAAAGCTTTGATTCTCATAACTGGGGTC 1224 |||||||||| ||||| || |||||||||||||||||||| || |||||||||||||||| Sbjct 1170 GTTATGTCTTTGTCCTTGGTGACAACCGCAACAAAAGCTTCGACTCTCATAACTGGGGTC 1229 Query 1225 CACTTCCAATAAAGAACATCATAGGGAGATCTGTGTTTCGCTATTGGCCACCAAGCAAAG 1284 ||||||||||| |||||||| | || ||||||||||| || || |||||||| ||||||| Sbjct 1230 CACTTCCAATAGAGAACATCGTTGGAAGATCTGTGTTCCGGTACTGGCCACCGAGCAAAG 1289 Query 1285 TGTCAGACATAATACACCATGAACAAGTTAGCCAAAAGAGAGCTGTTG 1332 | ||||||| ||| |||| || |||| || || |||| || |||||| Sbjct 1290 TATCAGACACCATATACCACGACCAAGCTATCCCAAAGGGACCTGTTG 1337 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 63267896945 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5