BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G06870.1
Length=1687
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470709 jgi|Araly1|470709|fgenesh2_kg.1__663__AT1G06870.1 2257 0.0
Ahg481956 jgi|Araly1|481956|fgenesh2_kg.4__1016__AT2G30440.1 625 4e-178
> Ahg470709 jgi|Araly1|470709|fgenesh2_kg.1__663__AT1G06870.1
Length=1592
Score = 2257 bits (1222), Expect = 0.0
Identities = 1511/1640 (92%), Gaps = 61/1640 (4%)
Strand=Plus/Plus
Query 29 AGACTCTCTCTGCTTTCGACCAAAACCTTCTCCTCTCCTCTGGGAGATCTCCATCTTCTT 88
|||||||||||||| |||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct 2 AGACTCTCTCTGCTATCGACC-AAACCTTCTCCTCTCCTCTGGGAGATCTCCAGCTTCTT 60
Query 89 CGCTTCTTCGCTTCCCCGCCTGAAACAATTACTCGATCTCGCCGGCGGAACAAGCTCTCC 148
||| |||||||| | | |||||||||||||||||| | ||| |||||
Sbjct 61 CGCGCCTTCGCTT------C-----C----ACTCGATCTCGCCGGCGGCATAAGATCTCC 105
Query 149 GTTTCTCTTTCCGGCAGATCGATTCTTCCAA-TTCCTTATTCCTTT-C-TAGGTCTTCCT 205
|||| ||||||||||||||||| |||||||| |||| || ||| | |||| |||
Sbjct 106 GTTTATCTTTCCGGCAGATCGACTCTTCCAATTTCC-GGTTAATTTCCTTAGGCCTT--A 162
Query 206 TAAGAAACCCTTACTTTCTTCAAAATCTGCATTT-ATGGCGATTAGGGTTACCTTCACCT 264
|| |||||||||||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct 163 GAAAAAACCCTTACTTTCATCAAAATCTGCATTTCATGGCGATTAGGGTTACCTTCACCT 222
Query 265 ACTCCAGCTATGTTGCTAGGAGCATTGCTTCATCCGCCGGGACTCGTGTCGGTACCGGCG 324
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 223 ACTCCAGCTATGTTGCTAGGAGCATTGCTTCTTCCGCCGGGACTCGTGTCGGCACCGGCG 282
Query 325 ACGTTAGATCATGCTTCGAAACATGGGTTCGTCCCAGGTTCTGCGGCCACAATCAGATAC 384
||||| | |||||||||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct 283 ACGTTCGCTCATGCTTCGAATCATGGGTTCGTCCCAGATTCTGCGGCCACAATCAGATAC 342
Query 385 CAGATATTGTTGATAAATCTCCCGGATCCAACACATGGGGTCCAAGCTCAGGCCCTCGTG 444
| ||||||| ||||||||||||||||||||||||| | ||||| |||||||||
Sbjct 343 CCGATATTGCTGATAAATCTCCCGGATCCAACACA-----T----GCTCAAGCCCTCGTG 393
Query 445 CTCGACCAGCTTCATCAATGTATAGCACCATTGCGAGGGAAATCCTCGAAGAAGGCTGCA 504
|||||||||||||||| |||||||||||||||||||||||| ||||||||||||| |||
Sbjct 394 CTCGACCAGCTTCATCGATGTATAGCACCATTGCGAGGGAACTCCTCGAAGAAGGAAGCA 453
Query 505 AGAGTCCACTTGTCTTGGGTATGATCTCTCTCATGAATTTGACTGGA---GCTCCACAGT 561
||||||||||||| ||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 454 AGAGTCCACTTGTGTTGGGTATGATCTCTCTCATGAATTTGACAGGAGCTGCTCCACAGC 513
Query 562 TTTCGGGTATGACCGGTCTCGGGATCTCTCCCTTTAAGACTTCTTCTGTCATCCCGTTCC 621
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 514 TCTCGGGTATGACCGGTCTCGGGATCTCTCCCTTTAAGACTTCTTCTGTTATCCCGTTCC 573
Query 622 TTAGGGGTTCCAAGTGGATGCCTTGTAGTATTCCGGCGACGTTATCAACGGATATTGCTG 681
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 574 TTAGGGGCTCCAAGTGGATGCCTTGTAGTATTCCGGCGACGTTATCAACGGATATTGCTG 633
Query 682 AGGTTGATAGAGGAGGAAAGGTCTGTGATCCTAAAGTGAAGTTGGAGTTGAGTGATAAAG 741
|||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 634 AGGTTGATAGAGGAGGAAAGGTGTGTGATGCTAAAGTGAAGTTGGAGTTGAGTGATAAAG 693
Query 742 TCTCGAATGGTGGAAACGGATGGGTTAATAAGCTGTTGAATATCTGCTCGGAGGATGCTA 801
|||| |||| ||| ||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 694 TCTCTAATGCTGGTAACGGTTGGGTTAATAAGCTGTTGAATATCTGCTCGGAAGATGCTA 753
Query 802 AGGCTGCTTTCACGGCGGTTACTGTTTCTCTCCTTTTCCGATCGGCTTTGGCCGAGCCAA 861
|||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 754 AGGCAGCTTTCACGGCGGTTACTGTTTCTCTCCTTTTCCGATCGGCGTTGGCTGAGCCAA 813
Query 862 AGTCTATACCTTCAACATCTATGCTTCCTACTCTCGATGTGGGTGATCGTGTTATAGCCG 921
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 814 AGTCTATACCTTCAACATCTATGCTTCCTACTCTCGATGTGGGTGATCGTGTTATGGCTG 873
Query 922 AGAAGGTCTCATACTTTTTCAGGAAGCCAGAGGTTTCAGACATAGTTATCTTCAAGGCTC 981
|||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 874 AGAAGGTCTCATACCTTTTCAGAAAGCCAGAGGTTTCAGACATAGTTATCTTCAAGGCTC 933
Query 982 CTCCTATTTTGGTGGAACATGGTTACAGTTGTGCTGATGTTTTCATAAAAAGGATAGTTG 1041
|||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct 934 CTCCTATTTTGGTGGAACATGGTTACAGTTGTACTGATGTTTTTATAAAAAGGATAGTTG 993
Query 1042 CTAGCGAAGGTGACTGGGTTGAAGTTTGTGATGGAAAGCTCTTAGTAAATGACACTGTTC 1101
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 994 CTAGCGAAGGTGACTGGGTTGAAGTTTGTGATGGAAAGCTCTTAGTAAATGACACTGTTC 1053
Query 1102 AAGCAGAGGATTTTGTCTTAGAGCCAATTGACTATGAAATGGAACCAATGTTTGTCCCTG 1161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1054 AAGCAGAGGATTTTGTCTTAGAGCCAATTGACTATGAAATGGAACCAATGTTTGTCCCTG 1113
Query 1162 AAGGTTATGTCTTCGTCCTAGGAGACAACCGCAACAAAAGCTTTGATTCTCATAACTGGG 1221
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1114 AAGGTTATGTCTTCGTCCTAGGAGACAACCGCAACAAAAGCTTTGATTCTCATAACTGGG 1173
Query 1222 GTCCACTTCCAATAAAGAACATCATAGGGAGATCTGTGTTTCGCTATTGGCCACCAAGCA 1281
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1174 GTCCACTTCCAATAAAGAACATCATAGGGAGATCTGTATTTCGCTATTGGCCACCAAGCA 1233
Query 1282 AAGTGTCAGACATAATACACCATGAACAAGTTAGCCAAAAGAGAGCTGTTGATGTATCTT 1341
||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct 1234 AAGTGTCAGACATCATACACCATGAACAAGTTATCCAAAAGAGAGCTGTTGATGTTTCTT 1293
Query 1342 GACCAACGCAGATGGTATCTTAGGATTAAGCAGAAAATTTGATTAGATGAGCTGTGCCAT 1401
|||||| ||||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1294 GACCAAAGCAGATGGT-TCTTAGGATTAAGCAGAAAATTTGATTAGACGAGCTGTGCCAT 1352
Query 1402 GCCAACCATTTTGGCGCTGAAGGCAACAGAGCAATTCTTTCTTCCTGTCTAGGCTTG-AT 1460
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct 1353 GCCAACCATTTTGGCGCTGAAGGCAACAGAGCAATTTTTTCTTCCTGTCTAGGCTTCTAT 1412
Query 1461 GGCGGACATGGAATGCACTGGGAAATCCATATAAAAAGAACAAGAAAATTGATATTTTTG 1520
||||||||||||||||| ||||||||||||| ||||| | || | || |
Sbjct 1413 GGCGGACATGGAATGCAATGGGAAATCCATA-AAAAA-A---------TT--T-TT---G 1455
Query 1521 CTTT-GAttttttttGATGTGTTGAAACCTAAATGCATCCAGTGTAATTGGCAGTAGCTG 1579
|||| |||| ||| |||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 1456 CTTTTGATTCTTT--GATGTGTTGAAACCTAAATGCAACCAGTGTAATTGGCAGTCGCTG 1513
Query 1580 TCAAACATAAAAGGGTAAACTTTCTTTTTTGAGTATT-T--AATGTGAAGAATCCTGTAA 1636
|||||||||||||||| |||| ||||||| ||||||| | |||||||| ||||||||||
Sbjct 1514 TCAAACATAAAAGGGTGAACTATCTTTTT-GAGTATTATCTAATGTGAAAAATCCTGTAA 1572
Query 1637 ACGTTCTGTTCTCAAGCTCT 1656
||||||||||||||||||||
Sbjct 1573 ACGTTCTGTTCTCAAGCTCT 1592
> Ahg481956 jgi|Araly1|481956|fgenesh2_kg.4__1016__AT2G30440.1
Length=1598
Score = 625 bits (338), Expect = 4e-178
Identities = 506/588 (86%), Gaps = 8/588 (1%)
Strand=Plus/Plus
Query 749 TGGTGGAAACGGATGGGTTAATAAGCTGTTGAATATCTGCTCGGAGGATGCTAAGGCTGC 808
||| |||| ||||||||||||||||| |||||||| || || |||||||| ||||||||
Sbjct 754 TGGAGGAAGTGGATGGGTTAATAAGCTTTTGAATATTTGTTCTGAGGATGCAAAGGCTGC 813
Query 809 TTTCACGGCGGTTACTGTTTCTCTCCTTTTCCGATCGGCT-TTGGCCGAGCCAAAGTCTA 867
|||||||||||||||||||||| ||||||||||||||||| ||| | ||||||||||| |
Sbjct 814 TTTCACGGCGGTTACTGTTTCTATCCTTTTCCGATCGGCTCTTG-CGGAGCCAAAGTCGA 872
Query 868 TACCTTCAACATCTATGCTTCC-TACTCTCG-ATGTGGGTGATCGTGTTATAGCCGAGAA 925
| ||||| || |||||| | || ||| || | |||| ||||| || ||||| || |||||
Sbjct 873 TTCCTTCCACGTCTATG-TACCCTAC-CTTGGATGTCGGTGACCGCGTTATGGCGGAGAA 930
Query 926 GGTCTCATACTTTTTCAGGAAGCCAGAGGTTTCAGACATAGTTATCTTCAAGGCTCCTCC 985
|||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 931 GGTCTCGTACTTTTTCAGGAAGCCAGAGGTTTCAGATATAGTGATCTTCAAGGCTCCTCC 990
Query 986 TATTTTGGTGGAACATGGTTACAGTTGTGCTGATGTTTTCATAAAAAGGATAGTTGCTAG 1045
|| ||| | ||| ||| |||||||| |||||| |||||||| |||||||| || ||
Sbjct 991 AATCTTGCTTGAATATGATTACAGTTCCAATGATGTATTCATAAAGAGGATAGTGGCAAG 1050
Query 1046 CGAAGGTGACTGGGTTGAAGTTTGTGATGGAAAGCTCTTAGTAAATGACACTGTTCAAGC 1105
||||||||||||||||||||| ||||||| |||||||| || ||||||| ||| ||||
Sbjct 1051 TGAAGGTGACTGGGTTGAAGTTCGTGATGGGAAGCTCTTTGTGAATGACATTGTGCAAGA 1110
Query 1106 AGAGGATTTTGTCTTAGAGCCAAT-TGACTATGAAATGGAACCAATGTTTGTCCCTGAAG 1164
||| |||||||||||||||||||| | | |||||||||||||||||||||||||| |||
Sbjct 1111 AGAAGATTTTGTCTTAGAGCCAATGTCA-TATGAAATGGAACCAATGTTTGTCCCCAAAG 1169
Query 1165 GTTATGTCTTCGTCCTAGGAGACAACCGCAACAAAAGCTTTGATTCTCATAACTGGGGTC 1224
|||||||||| ||||| || |||||||||||||||||||| || ||||||||||||||||
Sbjct 1170 GTTATGTCTTTGTCCTTGGTGACAACCGCAACAAAAGCTTCGACTCTCATAACTGGGGTC 1229
Query 1225 CACTTCCAATAAAGAACATCATAGGGAGATCTGTGTTTCGCTATTGGCCACCAAGCAAAG 1284
||||||||||| |||||||| | || ||||||||||| || || |||||||| |||||||
Sbjct 1230 CACTTCCAATAGAGAACATCGTTGGAAGATCTGTGTTCCGGTACTGGCCACCGAGCAAAG 1289
Query 1285 TGTCAGACATAATACACCATGAACAAGTTAGCCAAAAGAGAGCTGTTG 1332
| ||||||| ||| |||| || |||| || || |||| || ||||||
Sbjct 1290 TATCAGACACCATATACCACGACCAAGCTATCCCAAAGGGACCTGTTG 1337
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63267896945
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5