BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G06890.1
Length=1506
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470711 jgi|Araly1|470711|fgenesh2_kg.1__665__AT1G06890.1 2436 0.0
Ahg320800 jgi|Araly1|320800|fgenesh1_pm.C_scaffold_4000857 1168 0.0
> Ahg470711 jgi|Araly1|470711|fgenesh2_kg.1__665__AT1G06890.1
Length=1487
Score = 2436 bits (1319), Expect = 0.0
Identities = 1445/1501 (96%), Gaps = 28/1501 (2%)
Strand=Plus/Plus
Query 1 CTATCAAACGTAGAAAGCGAAAACTATCTTTCTT-CT-TC-CTCTCTCTCACTATTTTTC 57
|||||||||||||||||||||||||||| ||||| || || |||||||||||||||||||
Sbjct 1 CTATCAAACGTAGAAAGCGAAAACTATC-TTCTTCCTCTCTCTCTCTCTCACTATTTTTC 59
Query 58 TCTGTACGGTGGTGAGTGAAGACCATCAAAAATTGCAGAAAATAGGCTTAATCTGAATCT 117
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 60 TCTGTACGGTGGTGAGTGAAGACCATC-AAAATTGCAGAAAATAGGCTTAATCTGAATCT 118
Query 118 CTTCTCCTCCGTCGAAGTTTTGAATTCTCTCTGGTTCTCCAATTCTCCTCTCGAGCTGCC 177
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 CTTCTCCTCCGTCGATGTTTTGAATTCTCTCTGGTTCTCCAATTCTCCTCTCGAGCTGCC 178
Query 178 TTAAGCTTCGCATTTACGTTT-ACGTTATGCACGAATGAGATCATCGTAGATCGTGATTG 236
||||||||||||||||||||| | || || | || ||||||||||||||||||||||
Sbjct 179 TTAAGCTTCGCATTTACGTTTAATTTTTTG-GTGGATTAGATCATCGTAGATCGTGATTG 237
Query 237 AAGAAGCGAGAGATAAATTAGGAGAGCGAAGATGAGCGAGGGCCAGAAGTTCCAGTTGGG 296
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 AAGAAGCGGGAGATAAATTAGGAGAGCGAAGATGAGCGAGGGCCAGAAGTTCCAGTTGGG 297
Query 297 AACAATCGGCGCTTTGAGTTTGTCCGTTGTGTCATCTGTCTCGATTGTGATCTGTAACAA 356
||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||
Sbjct 298 AACAATCGGCGCTTTGAGTTTGTCCGTTGTGTCGTCTGTCTCCATCGTGATCTGTAACAA 357
Query 357 AGCGCTTATTAGCACCCTTGGCTTCACATTCGCGACTACTTTGACAAGTTGGCATCTTTT 416
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 AGCACTTATTAGCACCCTTGGCTTCACATTCGCGACTACTTTGACAAGTTGGCATCTTTT 417
Query 417 GGTCACATTTTGTTCCCTTCATGTGGCATTATGGATGAAGATGTTCGAACACAAGCCTTT 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 GGTCACATTTTGTTCCCTTCATGTGGCATTATGGATGAAGATGTTCGAACACAAGCCTTT 477
Query 477 TGATCCACGAGCTGTGATGGGATTTGGCATATTGAATGGGATATCCATAGGACTATTGAA 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 TGATCCACGAGCTGTGATGGGATTTGGCATATTGAATGGGATATCCATAGGACTATTGAA 537
Query 537 CCTCAGCCTGGGCTTTAATTCTGTCGGTTTTTACCAGATGACTAAACTAGCTATCATCCC 596
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 538 CCTCAGCCTGGGCTTTAATTCTGTCGGTTTTTACCAGATGACAAAACTAGCAATCATCCC 597
Query 597 CTGCACTGTTCTCTTGGAGACCCTCTTCTTCAGGAAAAAGTTCAGTCGAAAAATCCAGTT 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 CTGCACTGTTCTCTTGGAGACCCTCTTCTTCAGGAAAAAGTTCAGTCGAAAAATCCAGTT 657
Query 657 TTCATTAACCATCCTTCTCCTTGGTGTTGGAATTGCAACCGTCACAGATCTTCAACTTAA 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 TTCATTAACCATCCTTCTCCTTGGTGTTGGAATTGCAACCGTCACAGATCTTCAACTTAA 717
Query 717 TATGCTGGGTTCTGTCTTGTCGCTGCTGGCTGTTGTCACAACTTGTGTTGCTCAAATTAT 776
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 TATGCTGGGTTCAGTCTTGTCGCTGCTGGCTGTTGTCACAACTTGTGTTGCTCAAATTAT 777
Query 777 GACAAATACCATCCAGAAGAAGTTCAAAGTTTCATCCACGCAGCTTCTGTATCAGTCTTG 836
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 778 GACAAATACTATCCAGAAGAAGTTCAAAGTTTCATCCACGCAACTTCTGTATCAGTCTTG 837
Query 837 CCCATATCAAGCAATCACTCTTTTCGTCACTGGGCCATTTTTAGATGGGCTCCTAACCAA 896
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 CCCGTATCAAGCAATCACTCTTTTCGTCACTGGGCCATTTTTAGATGGGCTCCTAACCAA 897
Query 897 TCAGAACGTGTTTGCTTTCAAGTACACTTCTCAAGTAGTGTTCTTCATCGTCCTGTCTTG 956
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 898 TCAGAACGTGTTTGCTTTCAAGTACACTTCTCAAGTAGTGTTCTTCATCGTCCTGTCCTG 957
Query 957 CCTCATATCAGTCTCTGTAAACTTCAGCACATTTCTTGTCATTGGAAAAACATCTCCTGT 1016
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 CCTCATATCAGTCTCTGTAAACTTCAGCACATTTCTTGTCATTGGAAAAACATCTCCTGT 1017
Query 1017 CACATATCAGGTTCTAGGACATCTCAAAACATGCCTGGTTCTAGCATTTGGCTATGTGTT 1076
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 CACATATCAGGTTCTGGGACATCTCAAAACATGCCTGGTTCTAGCATTTGGCTATGTGTT 1077
Query 1077 GCTGCGAGACCCATTCGACTGGCGCAACATTCTCGGTATTCTAGTGGCTGTGATTGGAAT 1136
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1078 GCTGCGAGACCCATTCGACTGGCGCAACATTCTCGGTATTCTGGTGGCTGTGATTGGAAT 1137
Query 1137 GGTTGTTTATTCCTATTACTGCTCGATTGAGACTCAGCAGAAGGCAAGTGAAACCTCAAC 1196
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1138 GGTTGTTTATTCCTATTACTGCTCGATTGAGACTCAGCAGAAGGCAAGCGAAACCTCAAC 1197
Query 1197 TCAGTTGCCTCAGATGAAAGAGAGCGAGAAGGATCCGCTAATAGCAGCTGAAAATGGAAG 1256
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1198 TCAGTTGCCTCAGATGAAAGAGAGCGAGAACGATCCGCTAATAGCAGCTGAAAATGGAAG 1257
Query 1257 CGGAGTGTTATCAGATGGCGGCGGGGGAGTGCAGCAAAAGACGGTGGCTCCTGTATGGAA 1316
|||||||||||||||||| || |||||||||| |||||||||||||||||||||||||||
Sbjct 1258 CGGAGTGTTATCAGATGGTGGAGGGGGAGTGCCGCAAAAGACGGTGGCTCCTGTATGGAA 1317
Query 1317 CTCAAATAAAGATTTTCAAGCCTAAAAGCTTTGATCATCGCTAttttttt--ATATAATA 1374
|||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 1318 CTCAAATAAAGATTTTCAAGCCTAAA-GCTTTGATCATCGCTATTTTTTTTTATATAATA 1376
Query 1375 TCAAACTCTCTTTGTAT----T--GTCCCC--aaaaaaaCACAAACTTTTTAATTTCTCt 1426
||| |||||||||||| | |||||| ||||||| ||||||||||||||||||||
Sbjct 1377 CCAA-CTCTCTTTGTATCAGATTTGTCCCCCCAAAAAAA-ACAAACTTTTTAATTTCTCT 1434
Query 1427 ttttttttttttttGTTCCCTTTTTAAATATGCATAGCAGAGAAGTAGGGGAGACTGAAA 1486
||||||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1435 TTTTTTT-------GTTCCCTTTT-AAATATGCATAGCAGAGAAGTAGGGGAGACTGAAA 1486
Query 1487 A 1487
|
Sbjct 1487 A 1487
> Ahg320800 jgi|Araly1|320800|fgenesh1_pm.C_scaffold_4000857
Length=1062
Score = 1168 bits (632), Expect = 0.0
Identities = 935/1079 (87%), Gaps = 30/1079 (3%)
Strand=Plus/Plus
Query 268 ATGAGCGAGGGCCAGAAGTTCCAG-TTGGGAACAATCGGCGCTTTGAGTTTGTCCGTTGT 326
||||||||| |||| ||||||||| || ||||||||||||||||||||||| ||||||||
Sbjct 1 ATGAGCGAGAGCCACAAGTTCCAGCTT-GGAACAATCGGCGCTTTGAGTTTATCCGTTGT 59
Query 327 GTCATCTGTCTCGATTGTGATCTGTAACAAAGCGCTTATTAGCACCCTTGGCTTCACATT 386
||| ||||| ||||| |||||||||||||| || ||||| ||||| ||||| ||||||||
Sbjct 60 GTCCTCTGTTTCGATCGTGATCTGTAACAAGGCCCTTATCAGCACTCTTGGTTTCACATT 119
Query 387 CGCGACTACTTTGACAAGTTGGCATCTTTTGGTCACATTTTGTTCCCTTCATGTGGCATT 446
|| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 120 TGCAACTACTTTGACAAGCTGGCATCTTTTGGTCACATTTTGTTCACTTCATGTGGCATT 179
Query 447 ATGGATGAAGATGTTCGAACACAAGCCTTTTGATCCACGAGCTGTGATGGGATTTGGCAT 506
|||||||||| | || || ||| |||||||||||||||||||||| |||||||||| |
Sbjct 180 ATGGATGAAGTTTTTTGAGCACCAGCCTTTTGATCCACGAGCTGTCTTGGGATTTGGTGT 239
Query 507 ATTGAATGGGATATCCATAGGACTATTGAACCTCAGCCTGGGCTTTAATTCTGTCGGTTT 566
||| ||||| |||||||| ||| ||||||| |||||| |||| ||||||||||| |||||
Sbjct 240 ATTAAATGGTATATCCATTGGATTATTGAATCTCAGCTTGGGTTTTAATTCTGTTGGTTT 299
Query 567 TTACCAGATGACTAAACTAGCTATCATCCCCTGCACTGTTCTCTTGGAGACCCTCTTCTT 626
|||||||||||| |||||||| ||||||||||| |||||| |||| |||||| |||||||
Sbjct 300 TTACCAGATGACAAAACTAGCAATCATCCCCTGTACTGTTGTCTTAGAGACCATCTTCTT 359
Query 627 CAGGAAA-AAGTTCAGTCGAAAAATCCAGTTTTCATTAACCATCCTTCTCCTTGGTGTTG 685
|| |||| |||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 360 CA-GAAAGAAGTTCAGTCGAAAAATCCAGTTTTCATTAGTCATCCTTCTCCTTGGTGTTG 418
Query 686 GAATTGCAACCGTCACAGATCTTCAACTTAATATGCTGGGTTCTGTCTTGTCGCTGCTGG 745
||||||||||||| ||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 419 GAATTGCAACCGTTACAGATCTTCAGCTTAATATGATGGGTTCTGTCTTGTCGCTGCTGG 478
Query 746 CTGTTGTCACAACTTGTGTTGCTCAAATTATGACAAATACCATCCAGAAGAAGTTCAAAG 805
||||| |||||||||||||||| ||||||||||| ||||| ||||||||||| | ||| |
Sbjct 479 CTGTTATCACAACTTGTGTTGCCCAAATTATGACCAATACGATCCAGAAGAAATACAAGG 538
Query 806 TTTCATCCACGCAGCTTCTGTATCAGTCTTGCCCATATCAAGCAATCACTCTTTTCGTCA 865
||||||| || || ||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 539 TTTCATCTACCCAACTTCTGTATCAGTCTTGCCCATATCAAGCAATCACTCTTTTTGTTA 598
Query 866 CTGGGCCATTTTTAGATGGGCTCCTAACCAATCAGAACGTGTTTGCTTTCAAGTACACTT 925
| || |||||||||||||| || ||||||| |||||||||||||||||||||||||| |
Sbjct 599 CAGGCCCATTTTTAGATGGTCTGTTAACCAACCAGAACGTGTTTGCTTTCAAGTACACGT 658
Query 926 CTCAAGTAGTGTTCTTCATCGTCCTGTCTTGCCTCATATCAGTCTCTGTAAACTTCAGCA 985
||||||| |||||||||||||| ||||| ||||| ||||| || || |||||||||||||
Sbjct 659 CTCAAGTTGTGTTCTTCATCGTTCTGTCCTGCCTGATATCTGTTTCAGTAAACTTCAGCA 718
Query 986 CATTTCTTGTCATTGGAAAAACATCTCCTGTCACATATCAGGTTCTAGGACATCTCAAAA 1045
| ||||| ||||||||||| |||||||| ||||| |||||||||||||||||||| ||||
Sbjct 719 CGTTTCTCGTCATTGGAAAGACATCTCCAGTCACTTATCAGGTTCTAGGACATCTAAAAA 778
Query 1046 CATGCCTGGT-TCTAGCATTTGGCTATGTGTTGCTGCGAGACCCATTC-GACTGGCGCAA 1103
||||||| || | |||||||||| ||| | |||||| |||| ||||| | |||||||||
Sbjct 779 CATGCCTAGTGT-TAGCATTTGGGTATCTTTTGCTGAAAGACGCATTCAG-CTGGCGCAA 836
Query 1104 CATTCTCGGTATTCTAGTGGCTGTGATTGGAATGGTTG-TTTATTCCTATTACTGCTCGA 1162
|||||| |||||||| || || |||||||||||||| | |||||||||| |||||| | |
Sbjct 837 CATTCTTGGTATTCTTGTCGCCGTGATTGGAATGGT-GCTTTATTCCTACTACTGCAC-A 894
Query 1163 TT-GAGACTCAGCAGAAGGCAAG-TGAAACCTCAACTCAGTTGCCTCAGATGAAAGAGAG 1220
| || || || || ||||| | |||||| ||||| || ||||| |||||| | || |
Sbjct 895 CTCGAAACCCAACAAAAGGCT-GCTGAAACATCAACCCAATTGCCCCAGATGGATGAAAA 953
Query 1221 CGAGAAGGATCCGCTAATA-GCAGCTG-AAAATGGAAGCGGAGTGTTATCAGATGGCGGC 1278
||||||||||||||||||| | | || |||| || |||||| || ||||||| |
Sbjct 954 CGAGAAGGATCCGCTAATAAGT-G-TGGAAAACGGGAGCGGATTGATATCAGA---CAAT 1008
Query 1279 GGGGGAGTGCAGCAAAAGACGGTGGCTCCTGTATGGAACTCAAATAAAGATTTTCAAGC 1337
| ||| | |||| ||||| |||||||||||||||||| ||||||||||||||
Sbjct 1009 GT---AGTTC--CAAA-GACGGA---TCCTGTATGGAACTCAAACAAAGATTTTCAAGC 1058
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56373562600
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5