BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G06910.1 Length=1528 Score E Sequences producing significant alignments: (Bits) Value Ahg311756 jgi|Araly1|311756|fgenesh1_pm.C_scaffold_1000536 1781 0.0 > Ahg311756 jgi|Araly1|311756|fgenesh1_pm.C_scaffold_1000536 Length=1164 Score = 1781 bits (964), Expect = 0.0 Identities = 1106/1174 (94%), Gaps = 11/1174 (1%) Strand=Plus/Plus Query 109 ATGGCACTCTCGCAGTGGAAGGAAGCTATACTCGAAGGGATTTTCATGGAGATTGAGGAT 168 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGGCACTGTCGCAGTGGAAGGAAGCTATACTCGAAGGGATTTTCATGGAGATTGAGGAT 60 Query 169 GGTATTGTGGAAGAGAAGAATCTCGAGCGATTAGAGAATCTTGTGGAGATTTTACACAAA 228 ||| ||||||||||||||||||||||||| ||||||||||| ||||||||| |||||||| Sbjct 61 GGTGTTGTGGAAGAGAAGAATCTCGAGCGGTTAGAGAATCTAGTGGAGATTCTACACAAA 120 Query 229 GAAGGTTCTAAAGTACCCAAATCAGTCACGGAAGCGTATTGTAAAGTAGCTGTGGAGTGC 288 |||||||||||||| ||| |||||||||||||||| |||||||||||||||||||||||| Sbjct 121 GAAGGTTCTAAAGTGCCCGAATCAGTCACGGAAGCTTATTGTAAAGTAGCTGTGGAGTGC 180 Query 289 ACAGTGAAGTGTCTCGCTTATGAGAAAGATGCAAAAAAGGCTTACACCGAAGCAATCAAA 348 |||||||||||||||||||||||||||||||||||||||||||| || |||||||||| | Sbjct 181 ACAGTGAAGTGTCTCGCTTATGAGAAAGATGCAAAAAAGGCTTATACTGAAGCAATCAGA 240 Query 349 ACGATATGGCTCGGTAGGATTATGCCTTTATGCGATAAGGTTAGTTGTTTGGTTACTCTT 408 |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 TCGATATGGCTGGGTAGGATTATGCCTTTATGCGATAAGGTTAGTTGTTTGGTTACTCTT 300 Query 409 GACCTCTTGAAATGCTGTCGAAGATTATGGAAGGCCCACACTGACGACAAGGCTTGTAAG 468 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 301 GACCTCTTGAAATGCTGTCGAAGATTATGGAAGGCCCACAATGACGACAAGGCTTGTAAG 360 Query 469 ACACTGATGGATGAAGATACAAGAGACAAAGCTTTGGTTTGTTTGAGGAAGGTTGTTTTA 528 ||||| |||||||||||||| ||||||||||||||||||| ||||||||||||||||||| Sbjct 361 ACACTCATGGATGAAGATACTAGAGACAAAGCTTTGGTTTCTTTGAGGAAGGTTGTTTTA 420 Query 529 GATTTGAATCCCAATCTTGTTTTAGAGAATCTC-AACATGGATGAATCGGATGAGATTGA 587 ||||||||||||| ||||||||||||||||| | |||||||||||||| || || ||||| Sbjct 421 GATTTGAATCCCATTCTTGTTTTAGAGAATC-CGAACATGGATGAATCAGAGGACATTGA 479 Query 588 ATCTAGTGAAGAATCTGAAGAGACAGAATCAATGGTTGAAGCAAGAGAGGGCGTGGGTAA 647 |||||||||||||||| |||||||||| ||||||||||||||||||||||| |||| ||| Sbjct 480 ATCTAGTGAAGAATCTCAAGAGACAGAGTCAATGGTTGAAGCAAGAGAGGGGGTGGTTAA 539 Query 648 TCAGAACAGTCAGGCGTCTGAAGCTATGGAAGAAGACGACCAAGAGAGCCTCTTAGATAC 707 |||||||||||||||||||||||| |||||||| || || ||||||||||||||||||| Sbjct 540 TCAGAACAGTCAGGCGTCTGAAGCAATGGAAGACGA--AC-AAGAGAGCCTCTTAGATAC 596 Query 708 TGAACTGGAAAGACCTACTTCTGGAGGGTCAAAAGCTGTATATGTACCCAGTCAATTCAA 767 |||||||| ||||||| ||||||||||||||||||||||||||||||| |||||||||| Sbjct 597 AGAACTGGAGAGACCTATTTCTGGAGGGTCAAAAGCTGTATATGTACCCCGTCAATTCAA 656 Query 768 TCCCATTCCATCTGCAGTTGTTGACAGAGCGCTCAGAAAGCTGAGAGCTAGTAAAATCGA 827 |||||| ||||||||||||||||||||||||||||| |||| ||||||||||||||||| Sbjct 657 GCCCATTTCATCTGCAGTTGTTGACAGAGCGCTCAGAGAGCTTAGAGCTAGTAAAATCGA 716 Query 828 GCTAATGAAAGCTTTAGAAAAAGGAAGACCTTCAAATTTAAACAATGAGACGATTACAGA 887 ||||||||| ||||||||||||||| |||||||||||||||||||||||| ||||||||| Sbjct 717 GCTAATGAATGCTTTAGAAAAAGGACGACCTTCAAATTTAAACAATGAGAAGATTACAGA 776 Query 888 ACAAGAAAACGATGTTGCTAATCCTTCTGCAACAAACGCTGCACCAAGGCCTAGCTTGAT 947 ||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 777 ACAAGAAAATGATGTTGCTAATCCTTCTGCAACAAACGCTTCACCAAGGCCTAGCTTGAT 836 Query 948 GGAGCCACGTAGCACAGCACACACTTATGAATGGAATGACTCCATTGATGATTCAGATGG 1007 ||||| |||||| ||||||||||||||||||||||| |||||| |||||||||||||||| Sbjct 837 GGAGCGACGTAGTACAGCACACACTTATGAATGGAAAGACTCCCTTGATGATTCAGATGG 896 Query 1008 AGAAATGGGCGATGACATTGAAAGGATTAATAAATCAAAACGTAAAAGAATTGTCGTGTC 1067 ||||||||||||||| || ||| | || | |||||||||||||||||||||||||| Sbjct 897 AGAAATGGGCGATGATGGTGTAAG-A--AA-A--TCAAAACGTAAAAGAATTGTCGTGTC 950 Query 1068 TCCTTTGAAAAGAAACCGATGTTCAGAAGGTGCTAGAAGGCCAAAACTTCCTTGGAGTAC 1127 ||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||||||| Sbjct 951 TCCTTTGAAAAGAAACCGAGGTTTTGAAGGTGCTAGAAGGCCAAAAGTTCCTTGGAGTAC 1010 Query 1128 TGCAGAAACGCTGGCCGTACTCAAAGGCTATGAAAAGTATGGTGCAAACTGGAAACGGAT 1187 ||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||| Sbjct 1011 TGCAGAAACGCTGGCTGTACTGAAAGGCTATGAAAAGTATGGTGCAAACTGGAAGCGGAT 1070 Query 1188 CAAAGATGAGAATCCAGTTCTAGTGCGCAGAACTAATGGTGATATTAAAGATAAATTTCG 1247 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1071 CAAAGATGAGAATCCAATTCTAGTGCGCAGAACTAATGGTGATATTAAAGATAAATTTCG 1130 Query 1248 AGTTGAGATGAGACGTGAAGAGCGCCGTCATTGA 1281 |||||||||||||||||||||||||| ||||||| Sbjct 1131 AGTTGAGATGAGACGTGAAGAGCGCCATCATTGA 1164 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 57211547990 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5