BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G06910.1
Length=1528
Score E
Sequences producing significant alignments: (Bits) Value
Ahg311756 jgi|Araly1|311756|fgenesh1_pm.C_scaffold_1000536 1781 0.0
> Ahg311756 jgi|Araly1|311756|fgenesh1_pm.C_scaffold_1000536
Length=1164
Score = 1781 bits (964), Expect = 0.0
Identities = 1106/1174 (94%), Gaps = 11/1174 (1%)
Strand=Plus/Plus
Query 109 ATGGCACTCTCGCAGTGGAAGGAAGCTATACTCGAAGGGATTTTCATGGAGATTGAGGAT 168
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCACTGTCGCAGTGGAAGGAAGCTATACTCGAAGGGATTTTCATGGAGATTGAGGAT 60
Query 169 GGTATTGTGGAAGAGAAGAATCTCGAGCGATTAGAGAATCTTGTGGAGATTTTACACAAA 228
||| ||||||||||||||||||||||||| ||||||||||| ||||||||| ||||||||
Sbjct 61 GGTGTTGTGGAAGAGAAGAATCTCGAGCGGTTAGAGAATCTAGTGGAGATTCTACACAAA 120
Query 229 GAAGGTTCTAAAGTACCCAAATCAGTCACGGAAGCGTATTGTAAAGTAGCTGTGGAGTGC 288
|||||||||||||| ||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 121 GAAGGTTCTAAAGTGCCCGAATCAGTCACGGAAGCTTATTGTAAAGTAGCTGTGGAGTGC 180
Query 289 ACAGTGAAGTGTCTCGCTTATGAGAAAGATGCAAAAAAGGCTTACACCGAAGCAATCAAA 348
|||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |
Sbjct 181 ACAGTGAAGTGTCTCGCTTATGAGAAAGATGCAAAAAAGGCTTATACTGAAGCAATCAGA 240
Query 349 ACGATATGGCTCGGTAGGATTATGCCTTTATGCGATAAGGTTAGTTGTTTGGTTACTCTT 408
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TCGATATGGCTGGGTAGGATTATGCCTTTATGCGATAAGGTTAGTTGTTTGGTTACTCTT 300
Query 409 GACCTCTTGAAATGCTGTCGAAGATTATGGAAGGCCCACACTGACGACAAGGCTTGTAAG 468
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 301 GACCTCTTGAAATGCTGTCGAAGATTATGGAAGGCCCACAATGACGACAAGGCTTGTAAG 360
Query 469 ACACTGATGGATGAAGATACAAGAGACAAAGCTTTGGTTTGTTTGAGGAAGGTTGTTTTA 528
||||| |||||||||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct 361 ACACTCATGGATGAAGATACTAGAGACAAAGCTTTGGTTTCTTTGAGGAAGGTTGTTTTA 420
Query 529 GATTTGAATCCCAATCTTGTTTTAGAGAATCTC-AACATGGATGAATCGGATGAGATTGA 587
||||||||||||| ||||||||||||||||| | |||||||||||||| || || |||||
Sbjct 421 GATTTGAATCCCATTCTTGTTTTAGAGAATC-CGAACATGGATGAATCAGAGGACATTGA 479
Query 588 ATCTAGTGAAGAATCTGAAGAGACAGAATCAATGGTTGAAGCAAGAGAGGGCGTGGGTAA 647
|||||||||||||||| |||||||||| ||||||||||||||||||||||| |||| |||
Sbjct 480 ATCTAGTGAAGAATCTCAAGAGACAGAGTCAATGGTTGAAGCAAGAGAGGGGGTGGTTAA 539
Query 648 TCAGAACAGTCAGGCGTCTGAAGCTATGGAAGAAGACGACCAAGAGAGCCTCTTAGATAC 707
|||||||||||||||||||||||| |||||||| || || |||||||||||||||||||
Sbjct 540 TCAGAACAGTCAGGCGTCTGAAGCAATGGAAGACGA--AC-AAGAGAGCCTCTTAGATAC 596
Query 708 TGAACTGGAAAGACCTACTTCTGGAGGGTCAAAAGCTGTATATGTACCCAGTCAATTCAA 767
|||||||| ||||||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct 597 AGAACTGGAGAGACCTATTTCTGGAGGGTCAAAAGCTGTATATGTACCCCGTCAATTCAA 656
Query 768 TCCCATTCCATCTGCAGTTGTTGACAGAGCGCTCAGAAAGCTGAGAGCTAGTAAAATCGA 827
|||||| ||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 657 GCCCATTTCATCTGCAGTTGTTGACAGAGCGCTCAGAGAGCTTAGAGCTAGTAAAATCGA 716
Query 828 GCTAATGAAAGCTTTAGAAAAAGGAAGACCTTCAAATTTAAACAATGAGACGATTACAGA 887
||||||||| ||||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct 717 GCTAATGAATGCTTTAGAAAAAGGACGACCTTCAAATTTAAACAATGAGAAGATTACAGA 776
Query 888 ACAAGAAAACGATGTTGCTAATCCTTCTGCAACAAACGCTGCACCAAGGCCTAGCTTGAT 947
||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 777 ACAAGAAAATGATGTTGCTAATCCTTCTGCAACAAACGCTTCACCAAGGCCTAGCTTGAT 836
Query 948 GGAGCCACGTAGCACAGCACACACTTATGAATGGAATGACTCCATTGATGATTCAGATGG 1007
||||| |||||| ||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct 837 GGAGCGACGTAGTACAGCACACACTTATGAATGGAAAGACTCCCTTGATGATTCAGATGG 896
Query 1008 AGAAATGGGCGATGACATTGAAAGGATTAATAAATCAAAACGTAAAAGAATTGTCGTGTC 1067
||||||||||||||| || ||| | || | ||||||||||||||||||||||||||
Sbjct 897 AGAAATGGGCGATGATGGTGTAAG-A--AA-A--TCAAAACGTAAAAGAATTGTCGTGTC 950
Query 1068 TCCTTTGAAAAGAAACCGATGTTCAGAAGGTGCTAGAAGGCCAAAACTTCCTTGGAGTAC 1127
||||||||||||||||||| ||| ||||||||||||||||||||| |||||||||||||
Sbjct 951 TCCTTTGAAAAGAAACCGAGGTTTTGAAGGTGCTAGAAGGCCAAAAGTTCCTTGGAGTAC 1010
Query 1128 TGCAGAAACGCTGGCCGTACTCAAAGGCTATGAAAAGTATGGTGCAAACTGGAAACGGAT 1187
||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 1011 TGCAGAAACGCTGGCTGTACTGAAAGGCTATGAAAAGTATGGTGCAAACTGGAAGCGGAT 1070
Query 1188 CAAAGATGAGAATCCAGTTCTAGTGCGCAGAACTAATGGTGATATTAAAGATAAATTTCG 1247
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1071 CAAAGATGAGAATCCAATTCTAGTGCGCAGAACTAATGGTGATATTAAAGATAAATTTCG 1130
Query 1248 AGTTGAGATGAGACGTGAAGAGCGCCGTCATTGA 1281
|||||||||||||||||||||||||| |||||||
Sbjct 1131 AGTTGAGATGAGACGTGAAGAGCGCCATCATTGA 1164
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57211547990
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5