BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G06920.1
Length=948
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470713 jgi|Araly1|470713|fgenesh2_kg.1__667__AT1G06920.1 1099 0.0
> Ahg470713 jgi|Araly1|470713|fgenesh2_kg.1__667__AT1G06920.1
Length=921
Score = 1099 bits (595), Expect = 0.0
Identities = 831/938 (89%), Gaps = 44/938 (5%)
Strand=Plus/Plus
Query 1 ATGAGGAACTATAAGTTAAGATTGTCAGTTATGAGCCCAAGT-GAATGGTTCCACAAGCT 59
|||||||| |||||||| |||||||||| ||||| ||||||| | ||||||||||||||
Sbjct 1 ATGAGGAATTATAAGTTCAGATTGTCAGCTATGATCCCAAGTCG-CTGGTTCCACAAGCT 59
Query 60 CAAGAACATGACAAAACCTAGAAA-AAAGCATTCTCTTCC-TCTTTACTCCATAAACACT 117
||| |||||||| | |||||||| ||| ||| ||||||| || ||||||| ||||||||
Sbjct 60 CAAAAACATGACCAGGCCTAGAAATAAA-CATCCTCTTCCTTC-TTACTCCTTAAACACT 117
Query 118 ACCAAGAAGAGAAAACCTTCCTCTGAGTCAAAGTCTCTTCCTTACTCTTCAACTTCTTAC 177
||||||||||||||||||||||||||||| |||||||||||| |||||||||| ||||||
Sbjct 118 ACCAAGAAGAGAAAACCTTCCTCTGAGTCTAAGTCTCTTCCTCACTCTTCAACCTCTTAC 177
Query 178 TTCTTCAATAGGTCACGCTCACGCACATCCTTTGAATCTAGGATCCTTCAAATTTCACCA 237
|||| |||||||||| || ||| ||||||||||||| |||||||||||||||||||
Sbjct 178 TTCTCCAATAGGTCA----CA--CACTTCCTTTGAATCTAAGATCCTTCAAATTTCACCA 231
Query 238 AGAAACTCTCTTCACAACATACAGAGCAAAAGAAAGACTGTTTACAAGCCTTCTCCTCCT 297
|||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 232 AGAAACTCTCCTCACAAGATACAGAGCAAAAGAAAGACTGTTTACAAGCCTTCTCCTCCT 291
Query 298 TCCTCTTCTAT-TGTATCTGCAGGTTTTAACAAAACATTTCATCAAAGCCATGATTCTCT 356
||| ||||| | ||| ||||||||||||||||||| | | | | || ||| ||
Sbjct 292 TCCACTTCT-TCTGTGTCTGCAGGTTTTAACAAAA-A---GA--AGA-TCA-AATT-TC- 340
Query 357 CTCTGCCTCTTCCAACTTGAAAGTCATTTCTTCTGAAGATGATATTATCATCGACATGAA 416
|| | |||| | | || |||| |||||||||||| | ||||||||||||||
Sbjct 341 ATC-G---AAACCAA---G--ATTC-TTTC-TCTGAAGATGATGTCATCATCGACATGAA 389
Query 417 TAATAGAGATTTCAAGAAGAAAACT-TTCAAAGAGATCACGAAGTTTGATTCAACGGAGA 475
||| ||||||||||||||||||| | ||||||||||||| |||||||||||||||||||
Sbjct 390 TAACAGAGATTTCAAGAAGAAAA-TGTTCAAAGAGATCAATAAGTTTGATTCAACGGAGA 448
Query 476 AAGCCTGTCGTGCAAGTAACCGAACCAAGGAAACACATATACCTCATCATCTCTCTGTGA 535
|||| |||| |||||||||||||||||||||||||| |||| |||||||||| |||||||
Sbjct 449 AAGCATGTCCTGCAAGTAACCGAACCAAGGAAACACTTATAACTCATCATCTATCTGTGA 508
Query 536 AGGTCAGTAAAGAGAAAGAAGAT---GAAGAGGAAGATGCATGTCGAA-CCAAGAAGAAA 591
|||||| |||||||||||||||| |||||||||||||||||| ||| || ||||||||
Sbjct 509 AGGTCAATAAAGAGAAAGAAGATGAAGAAGAGGAAGATGCATGTAGAATCC-AGAAGAAA 567
Query 592 CATCAGAAAACATTAGTTTCTAGTGGAAGAAGATCATCAGCTAAATCTCCAAGGATAAAG 651
|||||||||||||||||||| |||||||||||||||||| ||||||| ||||||||||
Sbjct 568 CATCAGAAAACATTAGTTTCCGGTGGAAGAAGATCATCAGATAAATCTACAAGGATAAAA 627
Query 652 CTCAGAGCGAGATCTCCTAGAATTCAAGTCTCGCCTCGTAGAAGCAAATCAAGATCACAG 711
||||||| ||| |||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 628 CTCAGAGTGAGTTCTCCTAGAATTCAAGTCTCACCTCGTAGAAGCAAATCGAGATCACAG 687
Query 712 AACAAACAAATTCTTGACAGTTTTGCAGTAATCAAGAGTTCTATCGATCC-GAGCAAGGA 770
||||||||| |||||||||||||||||||||||||||||||| | ||||| || |||||
Sbjct 688 AACAAACAAGTTCTTGACAGTTTTGCAGTAATCAAGAGTTCTCTTGATCCAAAG-AAGGA 746
Query 771 TTTCAGAGAATCAATGGTGGAGATGATAGCAGAGAACAACATCAGAACCTCTAACGACAT 830
||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||
Sbjct 747 TTTCAGAGAATCAATGGTGGAGATGATAGCAGAGAGCAACATCAGAACCTCTAAAGACAT 806
Query 831 GGAGGATCTTCTAGTATGTTACCTTACCTTGAATCCCAAGGAGTATCATGATCTCATTAT 890
|||||||||||||| ||||||||||||||||||| |||||||||||||| |||| || ||
Sbjct 807 GGAGGATCTTCTAGCATGTTACCTTACCTTGAATGCCAAGGAGTATCATAATCTTATCAT 866
Query 891 CAAGGTTTTCGTTCAAGTCTGGCTTGAAGTCATAAACT 928
|||||||||||||||||||||||||||||| |||||||
Sbjct 867 CAAGGTTTTCGTTCAAGTCTGGCTTGAAGTTATAAACT 904
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35187452391
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5