BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G06923.1

Length=1228
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg333988 jgi|Araly1|333988|fgenesh1_pg.C_scaffold_1000553           800    0.0  


> Ahg333988 jgi|Araly1|333988|fgenesh1_pg.C_scaffold_1000553
Length=516

 Score =  800 bits (433),  Expect = 0.0
 Identities = 490/517 (95%), Gaps = 5/517 (1%)
 Strand=Plus/Plus

Query  54   ATGAGACTGAAGTCAAGTTTGATTAGCTTGAAATCAAAGCTTTCAAAATCATGCAACAGA  113
            |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGAGACTGAAGGCAAGTTTGATTAGCTTGAAATCAAAGCTTTCAAAATCATGCAACAGA  60

Query  114  TTCATCTCCTTCTTCCATGCTCGTTTTCGCAATGTCAAT---ACCACACAATCTTCATCA  170
             ||||||||||||||||||||||||||| ||||||||||   |||||||||||||| || 
Sbjct  61   CTCATCTCCTTCTTCCATGCTCGTTTTCACAATGTCAATACGACCACACAATCTTCTTCT  120

Query  171  TCTTCTTTGTTGTCTCGTCTCTGTTTTCTCAATACTAATAAGGAGCAGAGGATGAGCCAG  230
            |||  ||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct  121  TCTAGTTTGTTGTCTCGTCTCTGTTTTCTCAATACTGATAAGGAGCAGAGGATGAGCCAG  180

Query  231  ATCAGACCCAGAAATTCCCCGTCTAGTCTGATCGATGATTCCAAGCTTCTGCATTCAAGA  290
            || |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  ATAAGACCCAGAAGTTCACCGTCTAGTCTGATCGATGATTCCAAGCTTCTGCATTCAAGA  240

Query  291  AAGATGTTTCCTTTGGCTATGACGCAAAGGAACAAGAAAGCGAGGACGAGTCAAAGACAT  350
            |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  241  AAGATGTTTCCTTTGGCTGTGACGCAAAGGAACAAGAAAGCGAGGACGAGTCAAAGACAT  300

Query  351  ATGTTAAAGGAAGATGGTGTGAAAGAGGCTTGCAGAAGA-TTCGAGAACTATATGATCCA  409
            ||| | |||||||| ||||||||||||||||||| || | ||||||||||| ||||||||
Sbjct  301  ATGCTGAAGGAAGACGGTGTGAAAGAGGCTTGCACAA-ACTTCGAGAACTACATGATCCA  359

Query  410  TATGTTCGTTGAAGATGGGAAAATAGATGACTTGATGGACATGGAAGAGCTTCTCTATTA  469
            |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct  360  TATGATCGTTGAAGATGGGAAATTAGATGACTTGATGGACATGGAAGAGCTTCTCTATTA  419

Query  470  TTGGAAGAATCTTAATAGTCCAATCTTCATTGATCTTGTGACTAGATTCTATGGAGAGCT  529
            ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  420  TTGGAAGAATCTTAATAGTCCTATCTTCATTGATCTTGTGACTAGATTCTATGGAGAGCT  479

Query  530  CTGCACTGACCTGTTTCCAAGCGACCATGACGATTAA  566
            ||||||||||||||||||||||||| |||||| ||||
Sbjct  480  CTGCACTGACCTGTTTCCAAGCGACAATGACGGTTAA  516



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 45861869151


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5