BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G06930.1
Length=1041
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470714 jgi|Araly1|470714|fgenesh2_kg.1__668__AT1G06930.1 676 0.0
> Ahg470714 jgi|Araly1|470714|fgenesh2_kg.1__668__AT1G06930.1
Length=896
Score = 676 bits (366), Expect = 0.0
Identities = 510/573 (89%), Gaps = 35/573 (6%)
Strand=Plus/Plus
Query 311 AAAGTGTCCAATGCCTCAGCTGGATCGTTCTAGGGTTTCCACGACCAAACTGATCCTCTC 370
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 253 AAAGTGTCCAATGCCTCAACTGGATCGTTCTAGGGTTTCCACGACCAAACTGATCCTCTC 312
Query 371 TGTGGCCGTCGAGGGCGACTACTACGGTGGATCATCAGCCGCCGTTCCCTTCAAATGGGA 430
||||| |||||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 313 TGTGGTCGTCGACAGCGACTACTACGGTGGATCATCTGCCGCCGTTCCCTTCAAATGGGA 372
Query 431 ATCTCAGCCCGGAACTCCAAGACGACTCTC-CAAACGATCCTCCTCTTCCGGTTTCAATT 489
||||||||||||||||||||||||||| | ||||||||||||||||||||| ||| |||
Sbjct 373 ATCTCAGCCCGGAACTCCAAGACGACT-TAGCAAACGATCCTCCTCTTCCGGCTTCGATT 431
Query 490 CTGATTCTGATTTCAATTTTCCGGTTTCAGCACCACTAACACCTCCTCCTTCTTACTTCT 549
|||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct 432 CTGACTCTGATTTCAATTCTCCGGTTTCAGCTCCACTAACACCTCCTCCTTCTTACTTCT 491
Query 550 ACGCTTCTCCATCCTCTACAAAACAC-GTAAGCCCTaaaaaaaCCAACACTCTCTTTAGT 608
|||||| ||| |||||||| |||| | |||| |||||||| |||||||||||||| ||
Sbjct 492 ACGCTTATCCTTCCTCTACTAAAC-CTGTAAACCCTAAAA---CCAACACTCTCTTTGGT 547
Query 609 TCCTTGCTTTCCAAGAATCGTAGTGTGCCATCTTCTCCGGCTTCTTCTTCTTCGTCGTCC 668
||||||||| |||||||||||||||| || || ||||| ||||||||||| ||| |||
Sbjct 548 TCCTTGCTTCCCAAGAATCGTAGTGTTCCTTCGTCTCCAGCTTCTTCTTC---GTCATCC 604
Query 669 TCGTCTTCAGTTCCATCTTCTCCATTGAGGACATCTGATTTAAGCA--A----CAGAAGA 722
|||||||| ||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 605 TCGTCTTCGGTTCCATCTTCTCCATTGAGGACATCTGATTTAAGCAGGAGGAACAGAAGA 664
Query 723 A---GATCAATGTGGTTTGAATCTGGTTCGAGTTTAGACTACGGATCGAAT-AGT----- 773
| ||||||||||||||||||||| ||||||||||||||||||||||||| | |
Sbjct 665 AAAAGATCAATGTGGTTTGAATCTGCTTCGAGTTTAGACTACGGATCGAATCATTATAAT 724
Query 774 ---GCTAAATCTTCTGGATGTTACGCTTCCCTTGTCAAGGTGTTGCTCAGATCATGTTAA 830
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 725 AATGCTAAATCTTCTGGATGTTACGCTTCCATTGTCAAGGTGTTGCTCAGATCATGTTAA 784
Query 831 ---A--TGATTCTGCctttt-ttcttata-ttt 856
| ||||||||| |||| ||||| || |||
Sbjct 785 CTTAAATGATTCTGCTTTTTATTCTTCTAATTT 817
Score = 337 bits (182), Expect = 1e-91
Identities = 209/221 (95%), Gaps = 6/221 (3%)
Strand=Plus/Plus
Query 12 TATAATTGGATCAGATGATCTGGAACAGGATAATACTCTCAGTGGCTTCCAAGAAGCAGA 71
||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1 TATAATTGGATCAAATGATCTCGAACAGGATAATACTCTCAGTGGCTTCCAAGAAGCAGA 60
Query 72 GCCCAGAAG---CATCACACCTCGAGATTCTACAATATTTTATCAAATTGCTTCTTACTC 128
||||||||| |||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 61 GCCCAGAAGAAGCATCACACCTCGAGATTCAACAATATTTTATCAAATTGCCTCTTACTC 120
Query 129 ATTCAAAACTATATAATAAAATAAGAACACAAACAATTCA-AAACTTTTGAATCTGAATC 187
|||||||||||||||||||||||||| ||||||||||||| ||| |||||||||||||||
Sbjct 121 ATTCAAAACTATATAATAAAATAAGATCACAAACAATTCAGAAA-TTTTGAATCTGAATC 179
Query 188 TAAATCTTCTTAGTTCACCCAATAAAGTAAGAAAACaaaaa 228
|||||||||||| |||||||||||||||||||||| |||||
Sbjct 180 TAAATCTTCTTAATTCACCCAATAAAGTAAGAAAA-AAAAA 219
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38732883672
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5