BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G06960.1
Length=937
Score E
Sequences producing significant alignments: (Bits) Value
Ahg919413 jgi|Araly1|919413|scaffold_100694.1 1144 0.0
Ahg320780 jgi|Araly1|320780|fgenesh1_pm.C_scaffold_4000837 621 3e-177
> Ahg919413 jgi|Araly1|919413|scaffold_100694.1
Length=774
Score = 1144 bits (619), Expect = 0.0
Identities = 725/773 (94%), Gaps = 20/773 (3%)
Strand=Plus/Plus
Query 59 TCGCGGAGCTCAGTTGAAAGATGTTAACGGCTGATATACCACCAAATCAGTCAATCTACA 118
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TCGCCGAGCTCAGTTGAAAGATGTTAACGGCTGATATACCACCAAATCAGTCAATCTACA 60
Query 119 TAAAACATATCAATGAGAAGATCAAGAAAGAAGAGCTGAAGAGGTCTCTTTACTGTTTGT 178
||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 61 TAAAAAATATCAATGAGAAGATCAAGAAAGAAGAGCTGAAGAGATCTCTTTACTGTTTGT 120
Query 179 TCTCTCAGTTTGGAA-GATTACTTGATGTGGTTGCGTTAAAGACTCCTAAGCTCCGGGGA 237
||||||| ||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TCTCTCATTTTGGAAGGA-TACTTGATGTGGTTGCGTTAAAGACTCCTAAGCTCCGGGGA 179
Query 238 CAAGCATGGGTTGTTTTTACTGAAGTCACCGCTGCTAG-CAACGCTGTCCGTCAGATGCA 296
|||||||||||||| |||||||||||||| |||||||| | |||| |||| |||||||||
Sbjct 180 CAAGCATGGGTTGTGTTTACTGAAGTCACAGCTGCTAGTC-ACGCCGTCCTTCAGATGCA 238
Query 297 GAACTTTCCTTTCTATGATA-------AGC-C-TA---T---GCGGATACAATATGCAAA 341
|||||||| |||||||||| | | || | ||||||||||||||||||
Sbjct 239 AAACTTTCCATTCTATGATACCTTTTCCTCTCTTATGTTCCAGCGGATACAATATGCAAA 298
Query 342 ATCAAAGTCAGATTATGTTACTAAAGCCGAAGGGTCTTTTGTTCCaaaagaaaagaagat 401
||||| |||||||||||||||||||||| ||||| ||||||| || ||||||||||||||
Sbjct 299 ATCAACGTCAGATTATGTTACTAAAGCCCAAGGGACTTTTGTACCGAAAGAAAAGAAGAT 358
Query 402 gaagcaagaagagaaagttgaaaggaagcgacatgctgaagaaaCTCAACAACCAAGCAT 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 GAAGCAAGAAGAGAAAGTTGAAAGGAAGCGACATGCTGAAGAAACTCAACAACCAAGCAT 418
Query 462 GCCTAATGGCGCAACTACTCAGAACGGAATGCCTGTGCCTCCTTTCCAGCCGAGTGGGCA 521
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 419 GCCTAATGGCGCAACTACTCAGAACGGAATGCATGTGCCTCCTTTCCAGCCGAGTGGGCA 478
Query 522 AGACACGATGCCACCAAACAACATACTCTTCATTCATAATCTTCCCATTGAGACGAATAG 581
||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 479 AGACACGATGCCACCAAACAACATACTCTTCATTCATAATCTTCCCATTGAGATGACGAG 538
Query 582 TATGATGCTTCAGCTGCTCTTTGAGCAATACCCAGGATTCAAAGAGATAAGAATGATCGA 641
||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 539 CATGATGCTTCAGCTGCTATTTGAGCAATACCCAGGATTCAAGGAGATAAGAATGATCGA 598
Query 642 AGCAAAACCCGGAATTGCGTTTGTGGAGTATGAAGACGATGTTCAGTCTTCCATGGCCAT 701
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 599 AGCAAAACCCGGAATTGCGTTTGTGGAATATGAAGACGATGTTCAGTCTTCCATGGCCAT 658
Query 702 GCAGGCTCTTCAGGGTTT-CAAGATCACTCCGCAGAATCCAATGGTCGTCTCTTTTGCCA 760
||| |||||||||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct 659 GCAAGCTCTTCAGGGTTTTCAAGATCACTCCACAGAATCCAATGGTCGTCTCTTTTGCCA 718
Query 761 AGAAGTGAAAACCAGAGTTTTGTTATGCGGATGAATGGTAATGATATACTAAT 813
|||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 719 AGAAGTGAAAACCAGAGTTTTGATATGCGGATGAATGGTAATGATATACTAAT 771
> Ahg320780 jgi|Araly1|320780|fgenesh1_pm.C_scaffold_4000837
Length=699
Score = 621 bits (336), Expect = 3e-177
Identities = 594/712 (83%), Gaps = 43/712 (6%)
Strand=Plus/Plus
Query 79 ATGTTAACGGCTGATATACCACCAAATCAGTCAATCTACAT--AAAACATATCAATGAGA 136
||||||||||| ||||||||||| ||||| ||||||||||| ||||| |||| || |
Sbjct 1 ATGTTAACGGCAGATATACCACCGAATCAATCAATCTACATCCAAAAC--CTCAACGAAA 58
Query 137 AGATCAAGAAAGAAGAGCTGAAGAGGTCTCTTTACTGTTTGTTCTCTCAGTTTGGAAG-A 195
|||||||||||||||| ||||||| ||||||||||||||||||||||||||||| || |
Sbjct 59 AGATCAAGAAAGAAGAATTGAAGAGATCTCTTTACTGTTTGTTCTCTCAGTTTGGGAGGA 118
Query 196 TTACTTGATGTGGTTGCGTTAAAGACTCCTAAGCTCCGGGGACAAGCATGGGTTGTTTTT 255
| ||||||||||||||| || |||||||| || ||||| |||||||| |||||| |||
Sbjct 119 T-ACTTGATGTGGTTGCTTTGAAGACTCCGAAACTCCGTGGACAAGCTTGGGTTACATTT 177
Query 256 ACTGAAGTCACCGCTGCTAGCAACGCTGTCCGTCAGATGCAGAACTTTCCT-TTCTATGA 314
| ||||||||| ||||||||||| || || ||||||||||| || ||||| ||||| ||
Sbjct 178 AGTGAAGTCACAGCTGCTAGCAATGCCGTTCGTCAGATGCAAAA-TTTCCCCTTCTACGA 236
Query 315 TAAGCCTATGCGGATACAATATGCAAAATCAAAGTCAGATTATGTTA-CTAAAGCCGAAG 373
|||||| ||||| ||||||| |||||| |||||||||||| | | | |||||||||| |
Sbjct 237 TAAGCCAATGCGCTTACAATACGCAAAAGCAAAGTCAGATTGTCT-AGCTAAAGCCGA-G 294
Query 374 GGT-CTTTTGTTCCaaaagaaaagaagatgaagcaagaagagaaagttgaaaggaagcga 432
|| |||| |||||||||| ||||||| |||||||||||| ||||||||||| |||||
Sbjct 295 GGAACTTTCATTCCAAAAGATAAGAAGAGGAAGCAAGAAGAAAAAGTTGAAAGAAAGCG- 353
Query 433 catgctgaagaaaCTCAACAACCAAGCATGCCTAATGGCGCAA---CTACT---C-A-G- 483
|| ||||| | |||| ||||| || | |||||||| ||| ||| | | | |
Sbjct 354 --TG---AAGAATCCCAACGACCAAACACGGCTAATGGCCCAAGTGCTAATGGTCCAAGT 408
Query 484 ---AAC---GGAATGCCTGTGCC-TCCTTTCCAGCCGAGTGGGCAAGACA-CGATGCCAC 535
|| ||| | |||| ||| ||||| ||| ||||| |||||||| | |||||||||
Sbjct 409 GCCAATAATGGAGTCCCTGCGCCATCCTTCCCA-CCGAGCGGGCAAGA-AGCGATGCCAC 466
Query 536 CAAACAACATACTCTTCATTCATAATCTTCC-CATTGAGACGAATA-GTATGATGCTTCA 593
|||||||||||||||||||||| ||||| || || ||||| || | | |||||||||||
Sbjct 467 CAAACAACATACTCTTCATTCAGAATCTCCCACAC-GAGAC-AACAAGCATGATGCTTCA 524
Query 594 GCTGCTCTTTGAGCAATACCCAGGATTCAAAGAGATAAGAATGATCGAAGCAAAACCCGG 653
||| ||||| || |||||||| |||||||||||||||||||||||||| |||||||| ||
Sbjct 525 GCTTCTCTTCGAACAATACCCTGGATTCAAAGAGATAAGAATGATCGACGCAAAACCAGG 584
Query 654 AATTGCGTTTGTGGAGTATGAAGACGATGTTCA-GTCTTCCATGGCCATGCAGGCTCTTC 712
||| ||||||||||||||||||||||||||||| | ||||||| || ||||| ||||||
Sbjct 585 AATCGCGTTTGTGGAGTATGAAGACGATGTTCAAG-CTTCCATAGCTATGCAACCTCTTC 643
Query 713 AGGGTTTCAAGATCACTCCGCAGAATCCAATGGTCGTCTCTTTTGCCAAGAA 764
| |||||||| |||||||| ||||||||||||||| ||||||||||||||||
Sbjct 644 AAGGTTTCAAAATCACTCCCCAGAATCCAATGGTCATCTCTTTTGCCAAGAA 695
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34768100304
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5