BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G06980.1
Length=791
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470720 jgi|Araly1|470720|fgenesh2_kg.1__674__AT1G06980.1 987 0.0
> Ahg470720 jgi|Araly1|470720|fgenesh2_kg.1__674__AT1G06980.1
Length=655
Score = 987 bits (534), Expect = 0.0
Identities = 632/675 (94%), Gaps = 23/675 (3%)
Strand=Plus/Plus
Query 1 ATAAATCTGATAATCAATATATATCAAATACTCAAAACA-AAAGAGAAAGAAATTA-AAG 58
||||||||||||||| | || |||||||||||| | |||||||||| | | ||
Sbjct 1 ATAAATCTGATAATC-----A-AT-AAATACTCAAAAAATAAAGAGAAAG-CA-GAGGAG 51
Query 59 AGAGAGATGGGAAACAGCCTAAGGTGTTGTCTGGCTTGTGTTCTTCCATGTGGAGCACTA 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 52 AGAGAGATGGGAAACAGCCTAAGGTGTTGTCTGGCTTGTGTTCTTCCATGTGGAGCACTA 111
Query 119 GATTTGATCAGGATCGTTCATCTAAACGGCTACGTTGAGGAGATCACACGGTCAATAACC 178
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 112 GATTTGATCAGGATCGTTCATCTAAACGGCTACGTTGAGGAGATCACACGGTCAATAACT 171
Query 179 GCCGGAGAGATCCTCCAAGCAAACCCTAACCATGTCCTAAGCAAACCATGTTCTCAAGGA 238
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 172 GCCGGAGAGATCCTCCAAGCAAACCCAAACCATGTCCTAAGCAAACCATGTTCTCAAGGA 231
Query 239 GTTGTCCGCAAAATCTTGATCTTGTCTCCTGAATCCGAGCTCAAACGAGGAAGCATCTAT 298
|||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||
Sbjct 232 GTTGTCCGCAAAATCTTGATCTTGTCCCCTGAATCTGAGCTCAAGCGAGGAAGCATCTAT 291
Query 299 TTTCTCATCCCCGATTCTTCCTTGCCGGAGAAGAAAAGGCGGAGAAAGGACACTCCTCGC 358
||||||||||| ||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 292 TTTCTCATCCCTGATTCTTCCTTGCCGGAGAAGAAAAGGAGGAGAAAGGACGCTCCTCGC 351
Query 359 CGGAAGAAGAATCTCCAA-AACCCTAGTGCCGACGCCGCCGGCCGAGAAATTAAAGGTGA 417
||||| |||| |||| || |||||||||||||||||| |||| |||| ||||||||||
Sbjct 352 CGGAAAAAGACTCTC-AACAACCCTAGTGCCGACGCCACCGG---AGAAGTTAAAGGTGA 407
Query 418 TGAGGAATGTGTGAAGTTGTGTGAGAAGTACTTAGAAGAAGTAGTGTCGTCGGCGTCGAC 477
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 408 TGATGAATGTGTGAAGTTGTGTGAGAAGTACTTAGAAGAAGTTGTGTCGTCGGCGTCGAC 467
Query 478 AGGTAAAGAGCACCGTCATCGCCGGCGGCACAGCAGATCGGCGTCAGTATCCACGTGGCG 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 468 AGGTAAAGAGCACCGTCATCGCCGGCGGCACAGCAGATCGGCGTCAGTATCCACGTGGCG 527
Query 538 ACCTCTCCTTGACAGTATCTCTGAGGATCTTAATTAATTCCTCTTTCCTTTAAATCTCtt 597
|||||||||||||||||||||||||||||||||||||||||||| |||||| | | ||
Sbjct 528 GCCTCTCCTTGACAGTATCTCTGAGGATCTTAATTAATTCCTCTTCCCTTTA--T-T-TT 583
Query 598 ttttttttGTTGCTTCTAGCTAATGGTGttttttgtccggaagccggatttttatcattc 657
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 584 TTTTT---GTTGCTTCTAGCTAATGGTGTTTTTTGTCCGGAAGCCGGATTTTTATCATTC 640
Query 658 tctttttcatttttt 672
|||||||||||||||
Sbjct 641 TCTTTTTCATTTTTT 655
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29202154422
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5