BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G06990.1 Length=1232 Score E Sequences producing significant alignments: (Bits) Value Ahg311764 jgi|Araly1|311764|fgenesh1_pm.C_scaffold_1000544 1640 0.0 > Ahg311764 jgi|Araly1|311764|fgenesh1_pm.C_scaffold_1000544 Length=1083 Score = 1640 bits (888), Expect = 0.0 Identities = 1019/1084 (94%), Gaps = 2/1084 (0%) Strand=Plus/Plus Query 7 ATGTTGATCCATGTAATTATATTCATGATCATAACGACAATGC-AATTCTCGACGACATG 65 ||||||||||||||||||||||||||||||||||| ||||||| || ||||||||||||| Sbjct 1 ATGTTGATCCATGTAATTATATTCATGATCATAACCACAATGCTAA-TCTCGACGACATG 59 Query 66 CCATGCATATGTGATTAACGTGACCAACGTTAACGTATCAATGTTCCCGGCTATTCTTGT 125 ||||||| ||||||| |||||||||||| |||||||||||||||||||||| |||||||| Sbjct 60 CCATGCAAATGTGATCAACGTGACCAACATTAACGTATCAATGTTCCCGGCGATTCTTGT 119 Query 126 ATTCGGGGATTCAACAATCGATACCGGCAACAACAACTACATCAAAACCTACATCCGGGC 185 || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 120 GTTTGGGGATTCCACAATCGATACCGGCAACAACAACTACATCAAAACCTACATCCGGGC 179 Query 186 TAATTTCCCTCCTTACGGCTGCAATTTCCCCGGCCACAACGCTACCGGAAGATTCTCTAA 245 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || Sbjct 180 TAATTTCCCTCCTTACGGCTGCAATTTCCCCGGCCACAACGCTACCGTAAGATTCTCCAA 239 Query 246 CGGTAAACTTATTCCGGACTTCATAGCATCTCTTATGGGAATCAAAGACACCGTTCCTCC 305 ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 240 CGGTAAACTCATTCCGGACTTCATAGCATCGCTTATGGGAATCAAAGACACCGTTCCTCC 299 Query 306 TTTCCTAGACCCTCACTTGTCTGATTCCGATATCATCACCGGAGTGTGCTTTGCTTCGGC 365 |||||| |||||||| ||||| |||||||||||| ||||||| ||||||||||| ||||| Sbjct 300 TTTCCTCGACCCTCATTTGTCGGATTCCGATATCCTCACCGGGGTGTGCTTTGCCTCGGC 359 Query 366 TGGTTCCGGTTACGACAACCTCACAGATCGAGCAACTTCAACTCTATCCGTTGATAAACA 425 |||||| |||||||||||||||||||||| |||||||||| |||||||||| | |||||| Sbjct 360 TGGTTCGGGTTACGACAACCTCACAGATCTAGCAACTTCATCTCTATCCGTCGCTAAACA 419 Query 426 GGCGGATATGCTCAGAAGTTACGTGGAGAGGTTGAGCCAGATCGTCGGGGACGAGAAAGC 485 ||||||||||||||||||||||||||||||||||||| |||||| ||||| |||||||| Sbjct 420 GGCGGATATGCTCAGAAGTTACGTGGAGAGGTTGAGCGGGATCGTAGGGGAAGAGAAAGC 479 Query 486 GGCCTCGATAGTCAGCGAGGCTCTGGTGATTGTAAGCTCCGGAACTAACGATTTCAATCT 545 ||| ||||||||||||||||| |||||||||||||||| |||||||||||||||||||| Sbjct 480 TGCCACGATAGTCAGCGAGGCTTTGGTGATTGTAAGCTCTGGAACTAACGATTTCAATCT 539 Query 546 AAATCTCTACGATACTCCTTCTCGTCGTCAGAAGCTTGGCGTTGATGGCTATCAAAGCTT 605 ||||||||| ||||||||||||| ||| || ||||| |||||||||||||||||||| || Sbjct 540 AAATCTCTATGATACTCCTTCTCCTCGCCACAAGCTCGGCGTTGATGGCTATCAAAGTTT 599 Query 606 CATTCTCTCGAATGTACACAACTTCGTTCAAGAACTATATGACATTGGATGCCGTAAAAT 665 |||||| |||| |||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 600 CATTCTTTCGAGTGTACACAACTTTGTTCAAGAACTATATGACATTGGATGCCGTAAAAT 659 Query 666 AATGGTGTTGGGTCTACCGCCGGTCGGGTGTTTACCAATTCAGATGACAATGGCTATGCA 725 ||||||||| || ||||| ||||||||||||||||| ||||||||||| ||||||||||| Sbjct 660 AATGGTGTTAGGACTACCACCGGTCGGGTGTTTACCGATTCAGATGACGATGGCTATGCA 719 Query 726 AAAGCAGAACGAGAGACGATGCATCGACAAACAAAACTCAGATTCACAAGAGTTTAACCA 785 |||||| ||| ||||| ||||||||||||||||||| ||||||||||||||||||||||| Sbjct 720 AAAGCAAAACAAGAGAAGATGCATCGACAAACAAAATTCAGATTCACAAGAGTTTAACCA 779 Query 786 GAAGCTAAAAAACTCCTTGACGGAGATGCAATCCAACCTCACTGGAAGTGTCATCTTCTA 845 ||||||| |||| ||||||||||| ||||||||||| |||||||| |||||||||||||| Sbjct 780 GAAGCTAGAAAAGTCCTTGACGGATATGCAATCCAATCTCACTGGCAGTGTCATCTTCTA 839 Query 846 CGGCGATATCTACGGAGCATTGTTCGACATGGCCACTAATCCTCAAAGATACGGGTTAAA 905 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 840 CGGCGATATCTACGGAGCATTGTTCGACATGGCTACTAATCCTCAAAGATACGGGTTAAA 899 Query 906 GGAGACGACGAGAGGATGTTGCGGGACTGGAGAAATAGAGTTAGCGTACTTGTGCAATGC 965 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 900 GGAGACGACGAGAGGATGTTGCGGGACTGGAGAAATGGAGTTAGCGTACTTGTGCAATGC 959 Query 966 TTTAACTCGGATTTGTCCTAACCCTAACCAGTACCTTTTCTGGGACGATATTCATCCTTC 1025 ||||||||||| ||||||| |||||||||| | ||||||||||||||| ||||||||||| Sbjct 960 TTTAACTCGGACTTGTCCTGACCCTAACCAATTCCTTTTCTGGGACGACATTCATCCTTC 1019 Query 1026 CCAAATTGCTTACATAGTCATCAGTCTCAGTCTTGTTGAACAAATTTTCCACGTACTCTC 1085 |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1020 CCAAGTTGCTTACATAGTCATCAGTCTCAGTCTTGTTGAACAAATTCTCCACGTACTCTC 1079 Query 1086 TTGA 1089 |||| Sbjct 1080 TTGA 1083 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 46014360819 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5