BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G06990.1
Length=1232
Score E
Sequences producing significant alignments: (Bits) Value
Ahg311764 jgi|Araly1|311764|fgenesh1_pm.C_scaffold_1000544 1640 0.0
> Ahg311764 jgi|Araly1|311764|fgenesh1_pm.C_scaffold_1000544
Length=1083
Score = 1640 bits (888), Expect = 0.0
Identities = 1019/1084 (94%), Gaps = 2/1084 (0%)
Strand=Plus/Plus
Query 7 ATGTTGATCCATGTAATTATATTCATGATCATAACGACAATGC-AATTCTCGACGACATG 65
||||||||||||||||||||||||||||||||||| ||||||| || |||||||||||||
Sbjct 1 ATGTTGATCCATGTAATTATATTCATGATCATAACCACAATGCTAA-TCTCGACGACATG 59
Query 66 CCATGCATATGTGATTAACGTGACCAACGTTAACGTATCAATGTTCCCGGCTATTCTTGT 125
||||||| ||||||| |||||||||||| |||||||||||||||||||||| ||||||||
Sbjct 60 CCATGCAAATGTGATCAACGTGACCAACATTAACGTATCAATGTTCCCGGCGATTCTTGT 119
Query 126 ATTCGGGGATTCAACAATCGATACCGGCAACAACAACTACATCAAAACCTACATCCGGGC 185
|| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 GTTTGGGGATTCCACAATCGATACCGGCAACAACAACTACATCAAAACCTACATCCGGGC 179
Query 186 TAATTTCCCTCCTTACGGCTGCAATTTCCCCGGCCACAACGCTACCGGAAGATTCTCTAA 245
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 180 TAATTTCCCTCCTTACGGCTGCAATTTCCCCGGCCACAACGCTACCGTAAGATTCTCCAA 239
Query 246 CGGTAAACTTATTCCGGACTTCATAGCATCTCTTATGGGAATCAAAGACACCGTTCCTCC 305
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 240 CGGTAAACTCATTCCGGACTTCATAGCATCGCTTATGGGAATCAAAGACACCGTTCCTCC 299
Query 306 TTTCCTAGACCCTCACTTGTCTGATTCCGATATCATCACCGGAGTGTGCTTTGCTTCGGC 365
|||||| |||||||| ||||| |||||||||||| ||||||| ||||||||||| |||||
Sbjct 300 TTTCCTCGACCCTCATTTGTCGGATTCCGATATCCTCACCGGGGTGTGCTTTGCCTCGGC 359
Query 366 TGGTTCCGGTTACGACAACCTCACAGATCGAGCAACTTCAACTCTATCCGTTGATAAACA 425
|||||| |||||||||||||||||||||| |||||||||| |||||||||| | ||||||
Sbjct 360 TGGTTCGGGTTACGACAACCTCACAGATCTAGCAACTTCATCTCTATCCGTCGCTAAACA 419
Query 426 GGCGGATATGCTCAGAAGTTACGTGGAGAGGTTGAGCCAGATCGTCGGGGACGAGAAAGC 485
||||||||||||||||||||||||||||||||||||| |||||| ||||| ||||||||
Sbjct 420 GGCGGATATGCTCAGAAGTTACGTGGAGAGGTTGAGCGGGATCGTAGGGGAAGAGAAAGC 479
Query 486 GGCCTCGATAGTCAGCGAGGCTCTGGTGATTGTAAGCTCCGGAACTAACGATTTCAATCT 545
||| ||||||||||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 480 TGCCACGATAGTCAGCGAGGCTTTGGTGATTGTAAGCTCTGGAACTAACGATTTCAATCT 539
Query 546 AAATCTCTACGATACTCCTTCTCGTCGTCAGAAGCTTGGCGTTGATGGCTATCAAAGCTT 605
||||||||| ||||||||||||| ||| || ||||| |||||||||||||||||||| ||
Sbjct 540 AAATCTCTATGATACTCCTTCTCCTCGCCACAAGCTCGGCGTTGATGGCTATCAAAGTTT 599
Query 606 CATTCTCTCGAATGTACACAACTTCGTTCAAGAACTATATGACATTGGATGCCGTAAAAT 665
|||||| |||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 600 CATTCTTTCGAGTGTACACAACTTTGTTCAAGAACTATATGACATTGGATGCCGTAAAAT 659
Query 666 AATGGTGTTGGGTCTACCGCCGGTCGGGTGTTTACCAATTCAGATGACAATGGCTATGCA 725
||||||||| || ||||| ||||||||||||||||| ||||||||||| |||||||||||
Sbjct 660 AATGGTGTTAGGACTACCACCGGTCGGGTGTTTACCGATTCAGATGACGATGGCTATGCA 719
Query 726 AAAGCAGAACGAGAGACGATGCATCGACAAACAAAACTCAGATTCACAAGAGTTTAACCA 785
|||||| ||| ||||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct 720 AAAGCAAAACAAGAGAAGATGCATCGACAAACAAAATTCAGATTCACAAGAGTTTAACCA 779
Query 786 GAAGCTAAAAAACTCCTTGACGGAGATGCAATCCAACCTCACTGGAAGTGTCATCTTCTA 845
||||||| |||| ||||||||||| ||||||||||| |||||||| ||||||||||||||
Sbjct 780 GAAGCTAGAAAAGTCCTTGACGGATATGCAATCCAATCTCACTGGCAGTGTCATCTTCTA 839
Query 846 CGGCGATATCTACGGAGCATTGTTCGACATGGCCACTAATCCTCAAAGATACGGGTTAAA 905
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 840 CGGCGATATCTACGGAGCATTGTTCGACATGGCTACTAATCCTCAAAGATACGGGTTAAA 899
Query 906 GGAGACGACGAGAGGATGTTGCGGGACTGGAGAAATAGAGTTAGCGTACTTGTGCAATGC 965
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 900 GGAGACGACGAGAGGATGTTGCGGGACTGGAGAAATGGAGTTAGCGTACTTGTGCAATGC 959
Query 966 TTTAACTCGGATTTGTCCTAACCCTAACCAGTACCTTTTCTGGGACGATATTCATCCTTC 1025
||||||||||| ||||||| |||||||||| | ||||||||||||||| |||||||||||
Sbjct 960 TTTAACTCGGACTTGTCCTGACCCTAACCAATTCCTTTTCTGGGACGACATTCATCCTTC 1019
Query 1026 CCAAATTGCTTACATAGTCATCAGTCTCAGTCTTGTTGAACAAATTTTCCACGTACTCTC 1085
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1020 CCAAGTTGCTTACATAGTCATCAGTCTCAGTCTTGTTGAACAAATTCTCCACGTACTCTC 1079
Query 1086 TTGA 1089
||||
Sbjct 1080 TTGA 1083
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46014360819
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5