BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G07020.1
Length=674
Score E
Sequences producing significant alignments: (Bits) Value
Ahg910388 jgi|Araly1|910388|Al_scaffold_0001_642 640 0.0
Ahg910390 jgi|Araly1|910390|Al_scaffold_0001_644 298 4e-80
> Ahg910388 jgi|Araly1|910388|Al_scaffold_0001_642
Length=447
Score = 640 bits (346), Expect = 0.0
Identities = 418/451 (93%), Gaps = 11/451 (2%)
Strand=Plus/Plus
Query 125 ATGGAAGAGAACAACAACGCCGGGAGCGATTCCGACTCTAATTCCGTCGAAGATTCACAA 184
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 1 ATGGAAGAGAACAACAACGCCGGTAGCGATTCAGACTCTAATTCCGTCGAAGATTCACAA 60
Query 185 GACTATTACGAACCGATCTCAGCCGTCGAT-TTATATAACTCCAACGACGATGA--A-GA 240
|||||||||||||||||||||||||||||| || ||||| ||||||||||||| | ||
Sbjct 61 GACTATTACGAACCGATCTCAGCCGTCGATCTT-GATAACGCCAACGACGATGACGATGA 119
Query 241 AGACAGTTATCTTCCGA-TCGGTGG-AGATGGTCTCTCTAACGGCCATTGTATGATTCCG 298
|||||||||||||| | ||||||| | ||||||||||||||||||||||||||||||||
Sbjct 120 TGACAGTTATCTTCC-AGTCGGTGGCA-ATGGTCTCTCTAACGGCCATTGTATGATTCCG 177
Query 299 GATGCAGAGGTAGGAATCTCTTCTATTAGTATAAACGATA-ACACAGACAGCGAAGAAGA 357
|| ||||||| ||||||||| |||||||| |||||||| | || ||| |||||||||||
Sbjct 178 GAAGCAGAGGAAGGAATCTCCTCTATTAGAATAAACGA-AGACGGAGAGAGCGAAGAAGA 236
Query 358 GACAGAGACGGAGACTGGACCGGAGATCCGTAGAGCGTTTGAGGAGGACGAACGGCGGAG 417
|||||||||||||||| |||||||||||||||||| ||||| |||||||||||||| |
Sbjct 237 AACAGAGACGGAGACTGAACCGGAGATCCGTAGAGCATTTGAAGAGGACGAACGGCGTCG 296
Query 418 AAGATCGCCGTTAGTGGAGGAGAATGCCGTTAGGGTTATGGAGGCAATGCGAGCCATCTC 477
||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct 297 AAGATCGCCGTTAGTGGCGGAGAACGCCGTTAGGGTTATGGAGGCAATGCGAGCCATCTC 356
Query 478 ATTCCCTGGAACGGCTCCTGATTGGGCCTCCGATGTTAATGAGGATCGTTGGATTGATCA 537
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 GTTCCCTGGAACGGCTCCTGATTGGGCCTCCGATGTTAATGAGGATCGTTGGATTGATCA 416
Query 538 GCTTCGAAGATTGAGAACCACTTCTCAATAA 568
|||||||||||||||| ||||||||||||||
Sbjct 417 GCTTCGAAGATTGAGATCCACTTCTCAATAA 447
> Ahg910390 jgi|Araly1|910390|Al_scaffold_0001_644
Length=1575
Score = 298 bits (161), Expect = 4e-80
Identities = 181/191 (95%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 378 CGGAGATCCGTAGAGCGTTTGAGGAGGACGAACGGCGGAGAAGATCGCCGTTAGTGGAGG 437
|||||||||||||||| ||||| |||||||||||||| |||||||||||||||||| ||
Sbjct 1385 CGGAGATCCGTAGAGCATTTGAAGAGGACGAACGGCGTCGAAGATCGCCGTTAGTGGCGG 1444
Query 438 AGAATGCCGTTAGGGTTATGGAGGCAATGCGAGCCATCTCATTCCCTGGAACGGCTCCTG 497
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1445 AGAACGCCGTTAGGGTTATGGAGGCAATGCGAGCCATCTCGTTCCCTGGAACGGCTCCTG 1504
Query 498 ATTGGGCCTCCGATGTTAATGAGGATCGTTGGATTGATCAGCTTCGAAGATTGAGAACCA 557
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct 1505 ATTGGGCCTCCGATGTTAATGAAGATCGTTGGATTGATCAGCTTCGAAGATTGAGATCCA 1564
Query 558 CTTCTCAATAA 568
| |||||||||
Sbjct 1565 CGTCTCAATAA 1575
Score = 69.4 bits (37), Expect = 3e-11
Identities = 37/37 (100%), Gaps = 0/37 (0%)
Strand=Plus/Plus
Query 51 ACAACTTCATCGTCTTTTTCAGTTCAACCTCCGACAT 87
|||||||||||||||||||||||||||||||||||||
Sbjct 1233 ACAACTTCATCGTCTTTTTCAGTTCAACCTCCGACAT 1269
Score = 54.7 bits (29), Expect = 9e-07
Identities = 39/43 (91%), Gaps = 3/43 (7%)
Strand=Plus/Plus
Query 13 TCAA-TCCGTGT-A-ACAACTTCATCGTCTTTTTCAGTTCAAC 52
|||| || |||| | ||||||||||||||||||||||||||||
Sbjct 1218 TCAACTCAGTGTAATACAACTTCATCGTCTTTTTCAGTTCAAC 1260
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24741773133
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5