BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G07025.1

Length=501
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg910390 jgi|Araly1|910390|Al_scaffold_0001_644                     425    1e-118


> Ahg910390 jgi|Araly1|910390|Al_scaffold_0001_644
Length=1575

 Score =  425 bits (230),  Expect = 1e-118
 Identities = 289/318 (91%), Gaps = 2/318 (1%)
 Strand=Plus/Plus

Query  181  GCTCTGCGTTCGGTAATCCAAACGGAAGGACCATCGGCTCTGTACCGTGGGATATGGTAT  240
            ||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct  598  GCTTTGCGTTCGGTAATCCAAACGGAAGGACCATCGGCTCTGTACTGTGGGATATGGTCT  657

Query  241  ATGAGGCATGGAGCCATGGGACCCGCTCAATTCGTACATTTCTCCTTCTACGATGTATCC  300
            ||||||||||||||||||||||||||||| ||| |  |||||||||||||||| ||||||
Sbjct  658  ATGAGGCATGGAGCCATGGGACCCGCTCACTTCATTTATTTCTCCTTCTACGAAGTATCC  717

Query  301  AAGAATTTCTTGTCTACCGGGAATCCAAACAACCCCGTGGTGCACGTGATTTCCTGG-GC  359
            ||||| ||||||||| ||||||||||||||||| | ||||| || | ||||||| || ||
Sbjct  718  AAGAAGTTCTTGTCTGCCGGGAATCCAAACAACTCTGTGGTCCATGCGATTTCC-GGCGC  776

Query  360  CTTCACGGCTGTATGGAGTTATGCCGTTTCAACTCCTGTTGATATGGCGAAGCTGAGGCA  419
            |||| ||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct  777  CTTCGCGGCTGTATGGAGTTATGCCGTTTCAACTCCCGTGGATATGGCGAAGCTGAGGCA  836

Query  420  CCAAAATGGGTTCGGTAACTACAAAGGCGTCTGGGATTGCGCCAAAAGGGTGACTCATGA  479
             || | ||||||||| ||||||||||||||||||||||||| |||||||||||||  |||
Sbjct  837  GCAGAGTGGGTTCGGGAACTACAAAGGCGTCTGGGATTGCGTCAAAAGGGTGACTTGTGA  896

Query  480  GGAAGGAATCAGTAAGTT  497
            |||||| ||||||| |||
Sbjct  897  GGAAGGGATCAGTAGGTT  914


 Score =  169 bits (91),  Expect = 2e-41
 Identities = 122/136 (90%), Gaps = 5/136 (4%)
 Strand=Plus/Plus

Query  1    ATGGCGGTGGAAGA-TTCAACGGCACCAAAATTTAAGGAACAAGACCTCCAGTTGTGGCA  59
            ||||| |||||| | || |||||||||||||||||||||||||||||||||||| |||||
Sbjct  466  ATGGCAGTGGAA-ACTTTAACGGCACCAAAATTTAAGGAACAAGACCTCCAGTTCTGGCA  524

Query  60   GTTGATGATTGCAGGTTCAGTTGCTGGTTCCTTTAAGAACATGACGATGTTTCCTGTTCG  119
            |||||||||||| |||||||||||||||||| | ||| ||||| ||||||||||||||||
Sbjct  525  GTTGATGATTGCTGGTTCAGTTGCTGGTTCCGTCAAGCACATG-CGATGTTTCCTGTTCG  583

Query  120  CACC-TTGGATCAACG  134
            || | ||  |||||||
Sbjct  584  CATCATTA-ATCAACG  598



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18200215953


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5