BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G07030.1
Length=1477
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470726 jgi|Araly1|470726|fgenesh2_kg.1__680__AT1G07030.1 2167 0.0
> Ahg470726 jgi|Araly1|470726|fgenesh2_kg.1__680__AT1G07030.1
Length=1435
Score = 2167 bits (1173), Expect = 0.0
Identities = 1367/1458 (94%), Gaps = 23/1458 (2%)
Strand=Plus/Plus
Query 6 TCCACCTGAAATAAAAATTGTGGAAGAAAGATCAAATCTTTGACGACATCAAGGAGGAGG 65
|||||||||||||||||||||||||||||||||||| |||||| |||| |||||| ||
Sbjct 1 TCCACCTGAAATAAAAATTGTGGAAGAAAGATCAAACCTTTGATGACAGCAAGGA-GA-- 57
Query 66 ATTTGGTAAGCTACAGATAAAAACAAAAGCTATGATATGAGATAATGTAGTCCACCACCA 125
| ||||||| ||| |||||||||||||| ||||| || ||||||||||||| || ||||
Sbjct 58 AGTTGGTAACCTAGAGATAAAAACAAAA-CTATGTTAGGAGATAATGTAGT-CA--ACCA 113
Query 126 CACCAAATTCCCCCTTCACCGTCTCTCTTCGTCGGTGATTCACATTCCGATTTGGTGTCT 185
|| ||||||||||| ||||||||||||||||||||||||| ||||||||| || || |
Sbjct 114 CATCAAATTCCCCCATCACCGTCTCTCTTCGTCGGTGATTAACATTCCGA-TT--TG-C- 168
Query 186 TTTTTACTCTTAACAAGTCCTCAAAAACCCTACTTTTACTCGAGATTTTGTCTCCGCCGC 245
| | | | | | |||||||||||||||||||||||| |||||||||| |||||||
Sbjct 169 ----T-C-C--ACCCATTCCTCAAAAACCCTACTTTTACTCAAGATTTTGTCCCCGCCGC 220
Query 246 CGAGTACCAAGTGCCTCCCGATCTACGCCCCAATCCCTAAATGGCTACGGAGGCTACAAC 305
||||| || ||||||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct 221 CGAGTGCCTAGTGCCTCCCGATCTACTCCCCAATCCCTAGATGGCTACGGAGGCTACAAC 280
Query 306 CGTACCCAAATTCCAGGAACCTGATCTCCGGCAGGTTTCTCAGACACCGGATTTCAAACC 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 281 CGTACCCAAATTCCAGGAACCTGATCTCCGGCAGGTTTCTCAGACACCGGATTTCAAACC 340
Query 366 GGAAATCGCTCACGATGGTCTTAAGTTCTGGCAATTTATGATTGCTGGTTCGATTGCTGG 425
|||||||||||| || |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 341 GGAAATCGCTCATGACGGTCTTAAGTTCTGGCAATTCATGATTGCTGGTTCGATTGCTGG 400
Query 426 CTCCGTCGAACACATGGCGATGTTTCCCGTCGATACCATCAAGACCCATATGCAAGCGCT 485
||||||||||||||||||||||||||| || |||||| | ||||||||||||||||| ||
Sbjct 401 CTCCGTCGAACACATGGCGATGTTTCCTGTTGATACCGTGAAGACCCATATGCAAGCACT 460
Query 486 TCGACCATGTCCCTTAAAACCCGTCGGAATCCGGGAAGCTTTCCGTTCGATTATCCAAAA 545
|||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 461 TCGACCATGTCCGTTAAAACCCGTCGGAATCCGGCAAGCTTTCCGTTCGATTATCCAAAA 520
Query 546 GGAAGGACCTTCAGCTCTGTATCGCGGGATCTGGGCTATGGGTCTCGGCGCTGGACCTGC 605
|||||||||||||||| ||||||| ||||| ||||||||||||||||| |||||||||||
Sbjct 521 GGAAGGACCTTCAGCTTTGTATCGAGGGATTTGGGCTATGGGTCTCGGAGCTGGACCTGC 580
Query 606 TCACGCCGTTTACTTCTCATTCTATGAAGTATCGAAGAAGTATTTATCCGCCGGGGATCA 665
|||||||||||||||||| || || || ||||||||||||||||||||||||||| ||||
Sbjct 581 TCACGCCGTTTACTTCTCCTTTTACGAGGTATCGAAGAAGTATTTATCCGCCGGGAATCA 640
Query 666 GAACAATTCCGTCGCGCATGCGATGTCCGGCGTATTCGCTACTATATCAAGCGATGCTGT 725
|||||||||||||||||||||| | || || |||||||||||||||||||||||||||||
Sbjct 641 GAACAATTCCGTCGCGCATGCGGTCTCAGGTGTATTCGCTACTATATCAAGCGATGCTGT 700
Query 726 TTTCACTCCCATGGATATGGTGAAGCAGAGGTTGCAGATGGGTGAAGGGACTTATAAAGG 785
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 701 TTTTACTCCCATGGATATGGTGAAGCAGAGGTTGCAGATGGGTGAAGGGACTTATAAAGG 760
Query 786 AGTCTGGGATTGTGTTAAGAGGGTTTTGCGTGAGGAAGGGATTGGTGCGTTTTATGCTTC 845
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 761 GGTTTGGGATTGTGTTAAGAGGGTTTTGCGTGAGGAAGGGATTGGTGCGTTTTATGCTTC 820
Query 846 TTATAGGACGACGGTTCTGATGAACGCGCCGTTTACGGCTGTTCACTTTGCCACTTACGA 905
|||||||||||||||||||||||||||||| |||||||||||||| ||||| || || ||
Sbjct 821 TTATAGGACGACGGTTCTGATGAACGCGCCTTTTACGGCTGTTCATTTTGCGACGTATGA 880
Query 906 GGCTGCTAAGAAGGGATTGATGGAGTTTTCGCCGGATAGAATTAGTGATGAGGAAGGTTG 965
|||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 881 GGCTGCTAAGAAGGGATTGATGGAGTTTTCGCCGGAAAGAGTTAGTGATGAGGAAGGTTG 940
Query 966 GTTGGTTCACGCTACCGCTGGAGCTGCTGCTGGTGGATTGGCAGCTGCTGTGACTACGCC 1025
||||||||| || || |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 941 GTTGGTTCATGCCACTGCTGGAGCTGCTGCTGGTGGATTGGCAGCTGCTGTGACGACGCC 1000
Query 1026 GCTTGATGTTGTCAAGACGCAGTTGCAATGTCAGGGTGTGTGTGGATGTGACCGCTTCAC 1085
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1001 GCTTGATGTTGTCAAGACGCAGTTGCAATGTCAGGGTGTGTGTGGATGCGACCGCTTCAC 1060
Query 1086 TAGTAGTTCTATTAGCCATGTACTTAGAACGATAGTGAAAAAAGATGGATACAGAGGACT 1145
|||| |||| ||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1061 TAGTGGTTCGATTAGTCATGTACTGAGAACGATAGTGAAAAAAGATGGATACAGAGGACT 1120
Query 1146 TCTAAGGGGATGGCTCCCGAGAATGCTCTTCCATGCTCCTGCAGCAGCAATCTGTTGGTC 1205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1121 TCTAAGGGGATGGCTCCCGAGAATGCTCTTCCATGCTCCTGCAGCAGCAATCTGTTGGTC 1180
Query 1206 CACTTATGAAGGAGTTAAATCTTTCTTTCAAGACTTCAATGTCGATTCAAACACTGCCTG 1265
|||||||||||| |||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 1181 CACTTATGAAGGGGTTAAATCTTTCTTTCAAGACTTCAATGGCGATTCAAGCACTGCCTG 1240
Query 1266 aaaaaaaGACAAAAGGGTTAGGCTATTTCACACTCTTGAGGATCCTGCTTTTCTTATTTG 1325
|||||| |||||| || |||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1241 AAAAAA-GACAAATGG-TTAGGCTATT-CACACTCTTGAGGATCCTGCTTTTCTTATTTG 1297
Query 1326 TTTGTAACATAGTTTTCTCAGGTTTTCTATGAAGTCATTTTTAGATTATATATTTTCCAG 1385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1298 TTTGTAACATAGTTTTCTCAGGTTTTCTATGAAGTCATTTTTAGATTATATATTTTCCAG 1357
Query 1386 GTTTGTGTTGATGATAATGTCGTCGAGAAATTTTGATTAGAGTTGTACAAAACTATGTTC 1445
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1358 GTTTGTGTTGATGATGCTGTCGTCGAGAAATTTTGATTAGAGTTGTACAAAACTATGTTC 1417
Query 1446 CTTCCAAATTTCTAATAA 1463
||||||||||||||||||
Sbjct 1418 CTTCCAAATTTCTAATAA 1435
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55268945495
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5