BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G07040.1
Length=1676
Score E
Sequences producing significant alignments: (Bits) Value
Ahg919426 jgi|Araly1|919426|scaffold_100707.1 1700 0.0
> Ahg919426 jgi|Araly1|919426|scaffold_100707.1
Length=1159
Score = 1700 bits (920), Expect = 0.0
Identities = 1078/1156 (93%), Gaps = 4/1156 (0%)
Strand=Plus/Plus
Query 259 CTCCTTATCTCCACCATGATCTCACTCCACTCATCAGCCATTAAAGCCTCTCTCTACGGC 318
||||| ||||| |||||||| |||||||| || || |||||||||||||||||| || ||
Sbjct 6 CTCCTCATCTCTACCATGATGTCACTCCAGTCCTCCGCCATTAAAGCCTCTCTCCACCGC 65
Query 319 TC-TTTCCCTTCTTCGTTACGATCAACACTCTCTGTTTCCTTCTCTGCTGGATCTCTTAT 377
|| ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 66 TCGTTT-CCTTCGTCGTTACGATCAACACTCTCTGTTTCCTTCTCTGCTGGATCTCTTAT 124
Query 378 TCGGCTTCCTTCCGTC-GGCAAGCGCAATCTCTCCGTCGTCGTTTCCTCTGGAAGAGACT 436
||||||||| ||| | || || ||| ||||||||| |||| | |||||||||||||||
Sbjct 125 TCGGCTTCCCGCCG-CTGGAAACCGCGTTCTCTCCGTAGTCGCTACCTCTGGAAGAGACT 183
Query 437 CCTCGATGTCATCAAACAATGTTTCTCGCGGATCGTCTTCAAAGGTTGCTGCTGAATCTT 496
|||| |||||||||| ||||| |||||||||||| |||||||||||||||||||||||||
Sbjct 184 CCTCCATGTCATCAATCAATGATTCTCGCGGATCATCTTCAAAGGTTGCTGCTGAATCTT 243
Query 497 TCTTCAGGAGTGTCTTAGGGCAGATGGAAACTGTTTACCTAAATCGAAACCCGACGCCTA 556
||||||||||||| |||||||||||||||||||||||||||||| ||||||| || ||||
Sbjct 244 TCTTCAGGAGTGTGTTAGGGCAGATGGAAACTGTTTACCTAAATAGAAACCCAACTCCTA 303
Query 557 AATCCGTCTTGGAGCTTGTTCGATCTGTTGATGACCAGCAACTTTGCTATGATCATCTCG 616
||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 304 AATCCGTCTTGGAACTTGTTCGATCCGTTGATGATGAGCAACTTTGCTATGATCATCTCG 363
Query 617 CTTTCAGAACGTTTGGGATTGGTGGTTATGGGATTGACTCGCTTGCAAGCTTTTTCCTTG 676
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 364 CTTTCAGAACGTTTGGAATTGGTGGTTATGGGATTGACTCGCTTGCAAGCTTTTTCCTTG 423
Query 677 ACTATGGATATACACCGATGGATGAGCTAAAATTTCCGGCCAAAAAGCTTAGAGCTTTGT 736
||||||| ||||| || |||||||| || || ||||||||||||||||||||||||||||
Sbjct 424 ACTATGGGTATACTCCAATGGATGAACTGAAGTTTCCGGCCAAAAAGCTTAGAGCTTTGT 483
Query 737 GGTTTGCACCTCCTAATGCTTCTGCTGTTCCTGGTGGCAGCGGCGTTAACGGTCCTTTAC 796
|||||||||||||| ||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct 484 GGTTTGCACCTCCTGATGTTTCTGCTGTTCCTGGTGGAAGCGGCGTTAACGGTCCTTTAC 543
Query 797 CGAGAGTTTTTATCTCAGAGCTCCTGGTGGACCAGATGAGTTCACAGACTCAGGATGTAA 856
| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 544 CAAGAGTTTTTATCTCAGAGCTCCTTGTGGACCAGATGAGTTCACAGACTCAGGATGTGA 603
Query 857 TCAGAAAATACACGGAAGCATCACCTAATGGGAAAAAGTATGCTGGACTTTCTAGTGCTT 916
| ||||||||||||| |||||| || ||||||||||| ||||||| |||||| |||||||
Sbjct 604 TTAGAAAATACACGGGAGCATCGCCCAATGGGAAAAACTATGCTGCACTTTCAAGTGCTT 663
Query 917 TGGGTACTTTAACTTGGGAAAAGCCTCTATCTTCTGAGTTTGAGCAATTGGCTAGGGAAA 976
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 664 TGGGTACTTTAACTTGGGAAAAGCCTCTGTCTTCTGAGTTTGAGCAATTGGCTAGGGAAA 723
Query 977 GTGAATACGCAGCATGGACCCTTGTCAATGGATATGCACTTAACCACGTCACGATTTCTG 1036
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 724 GTGAATACGCAGCATGGACCCTTGTCAATGGCTATGCACTTAACCACGTCACGATTTCTG 783
Query 1037 TTCATCGGCTTAAATCTCATCTAAACAAAATCAAGAAGCTCAATCAGTTCCTCGAAGAAA 1096
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 784 TCCATCGGCTTAAATCTCATCTAAACAAAATCAAGAAGCTCAATCAGTTCCTTGAAGAAA 843
Query 1097 AAGGTATCAAATTGAACTCAGAAGGAGGAGTCCTTAAAGTTAGCCCTGATGGTGGTTTGC 1156
||||| | |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 844 AAGGTTTTAAATTGAACTCAGAAGGAGGAGTCCTCAAAGTTAGCCCTGATGGTGGTTTGC 903
Query 1157 AGCAAAGCTCAACTGTAGCAGATTCGATATCTTTCAAGTTCGCTGATGGTGTTACCAAAT 1216
|||||||||||||||| |||||||| || |||||||||||| |||||||||| |||||||
Sbjct 904 AGCAAAGCTCAACTGTGGCAGATTCAATTTCTTTCAAGTTCTCTGATGGTGTCACCAAAT 963
Query 1217 CTATCCCTTGTTCATACATTGAGTTTGCTGAACGCCTTGTACTTCCGCAGTACCAAAATA 1276
|||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 964 CTATCCCTTGTTCATACATTGAGTTTGCTGAACGCCTTGTGCTTCCCCAGTACCAAAATG 1023
Query 1277 TACCCGAAAGCGAGATACAAGAGTCTCATCGACGTGATGGATTTGAGGTCGGAAATGCTG 1336
| |||||||||||||||| ||||||||||||||| ||||| |||||||| ||||||||||
Sbjct 1024 TCCCCGAAAGCGAGATACGAGAGTCTCATCGACGCGATGGCTTTGAGGTTGGAAATGCTG 1083
Query 1337 ACAAGATCTTCGAGAGCACATTTCAGGAGCAGCTTTCCCGACGAACCGGGTGATAGCAAA 1396
||||||||||||||||||||||||||||||||||||| ||||| |||||||||| ||| |
Sbjct 1084 ACAAGATCTTCGAGAGCACATTTCAGGAGCAGCTTTCTCGACGTACCGGGTGATGGCACA 1143
Query 1397 TAGTAGCCACGGCTTT 1412
||||||||||||||||
Sbjct 1144 TAGTAGCCACGGCTTT 1159
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62848904250
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5