BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G07050.1
Length=833
Score E
Sequences producing significant alignments: (Bits) Value
Ahg910393 jgi|Araly1|910393|Al_scaffold_0001_647 933 0.0
> Ahg910393 jgi|Araly1|910393|Al_scaffold_0001_647
Length=585
Score = 933 bits (505), Expect = 0.0
Identities = 561/588 (95%), Gaps = 3/588 (1%)
Strand=Plus/Plus
Query 107 atggatacacaaaggttgccgaagaaagaagaagaagaagaagaagaTCATCTACTTTCT 166
||||||| ||| |||||||||||| ||| ||||||||||||||||||||||||||| ||
Sbjct 1 ATGGATAAACAGAGGTTGCCGAAG-AAG--GAAGAAGAAGAAGAAGATCATCTACTTACT 57
Query 167 TCAACCTTCGAGTCCATCAATGGTCACTCTCGAGACCAACACAATCATTCTATAGATGAT 226
||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct 58 TCAACCTTCGAGTCCATCAATGGTCTCTCTCGAGACCAACACAACCATTCTATAGATGAT 117
Query 227 TTCGAGAGCATTTTCGACATCACCATTGACAATTTAAGCTGCTCTAACGAACTCACGTGG 286
||||| ||||||||||||||||||||||| ||||||||||||||| |||||||||| |||
Sbjct 118 TTCGACAGCATTTTCGACATCACCATTGATAATTTAAGCTGCTCTCACGAACTCACATGG 177
Query 287 GATTTCTGGGAAGAAGACGAAGATGAAGATGTAGGGGAAGAAGAAAAAAGATCGAGTACT 346
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 178 GATTTCTGGGAAGAAGACGAAGATGAAGATGTAGGGGAAGAAGAAAAAAGATTGAGTACT 237
Query 347 GATCAAGAAGGCTCAAGTTTTGGGTTTTGGGAGAATAAGCCGACGGATTATGAAGACAAA 406
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 238 GATCAAGAAGGCTCAAGTTTCGGGTTTTGGGAGAATAAGCCGACGGATTATGAAGACAAA 297
Query 407 GACTTGGGTCTGAAGCTGAATCTGAACCATCAAGAAGTTATCGATGCTTGGTCTGATCAC 466
|||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 298 GACTTGGGCCTGAAGCTAAATCTGAACCATCAAGAAGTTATTGATGCTTGGTCTGATCAC 357
Query 467 CAGAAACCTCTGTGGACAGATACTTCAACTCTGGACAATTCCGTTTATAGGGGAGAAGTG 526
|||||||||||||||||||||| | ||||| ||| ||||||| |||||| |||||||||
Sbjct 358 CAGAAACCTCTGTGGACAGATAATACAACTGTGGCCAATTCCCTTTATAAGGGAGAAGTT 417
Query 527 CCAGTGATAGAGGAGAAGAGAAACATGCGAAGAGAAGCAAGTGTGTTAAGGTACAAAGAG 586
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 CCAGTGATAGAGGAGGAGAGAAACATGCGAAGAGAAGCAAGTGTGTTAAGGTACAAAGAG 477
Query 587 AAAAGACAGAGTAGGCTCTTCTCTAAGAAGATAAGGTACCAAGTCCGAAAACTCAACGCA 646
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 AAAAGACAGAGTAGGCTCTTCTCTAAGAAGATAAGGTACCAAGTCCGAAAACTCAACGCT 537
Query 647 GATAAACGACCTCGTTTTAAGGGTCGGTTCGTGAAAAGAGAGACTTAA 694
|||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 538 GATAAACGACCTCGTTTTAAGGGTCGGTTCGTGAAAAGGGAGACTTAA 585
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30803316936
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5