BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G07060.1
Length=733
Score E
Sequences producing significant alignments: (Bits) Value
Ahg334007 jgi|Araly1|334007|fgenesh1_pg.C_scaffold_1000572 822 0.0
> Ahg334007 jgi|Araly1|334007|fgenesh1_pg.C_scaffold_1000572
Length=756
Score = 822 bits (445), Expect = 0.0
Identities = 522/559 (93%), Gaps = 5/559 (1%)
Strand=Plus/Plus
Query 78 ATGTTCAGATTCGATGATCGCTGATCAGACTTATCTCTTTATCAATCGGGTCCAAGACAG 137
||| ||||| ||||||||| |||||||||||||||||||| |||||||||||||||| ||
Sbjct 1 ATG-TCAGAGTCGATGATCACTGATCAGACTTATCTCTTTCTCAATCGGGTCCAAGATAG 59
Query 138 AAGGTTCGATGAAGAATCTCTTCGGATTCTCGAGTTGTCTCTGGTTGCAATGAATGTGAA 197
|||||| ||||||||||||||||| |||||||| |||||||||||||||||||||| |||
Sbjct 60 AAGGTTTGATGAAGAATCTCTTCGAATTCTCGAATTGTCTCTGGTTGCAATGAATGCGAA 119
Query 198 ATCGTTTTTGGAAGTTAGATCTCGATTGAGAGATTTCATGAGATCTGAATCGGTTGTTAT 257
|||||||| ||||||||||| || |||||||||||| ||| ||| |||||||||| |||
Sbjct 120 ATCGTTTTACGAAGTTAGATCCCGCTTGAGAGATTTCCTGAAATCGGAATCGGTTGCTAT 179
Query 258 ATTCGGTGAGCTCACCGGAGAATCCATGGTCGCAAAACTCTCCGTACTTGAATTCTTCGC 317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 ATTCGGTGAGCTCACCGGAGAATCCATGGTCGCAAAACTCTCCGTACTTGAATTCTTCGC 239
Query 318 TCGTGCTTTTGCTCTTCTCGGTGATATGGAGAGTTGTTTGGCTATGAGGTATGAGGCATT 377
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 GCGTGCTTTTGCTCTTATCGGTGATATGGAGAGTTGTTTGGCTATGAGGTATGAGGCATT 299
Query 378 GAATTTGCGGCAGCTCAAGTCTCCTAGCTGTTTGTGGTTAGGGGTTTCACATTCAGAATG 437
||| |||||| ||||||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct 300 GAACTTGCGGGAGCTCAAGTCTCCAAGCTGTTTGTGGTTAAGGGTTTCACATTCAGAATG 359
Query 438 GACCAAATTTGCAGTCCAATCTATGGAAAATGGATTCCCTTCCATTGCAGGAAAGGCGTC 497
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 360 GACCAAATTTGCAGTCCAATCTATGGAAAATGGATTCCCTTCTATTGCAGGAAAGGCGTC 419
Query 498 TGAAAATGCCCTGTTGAGCCTTAAGAAGGATAGTCTT-ATTGAACCAAAATCAGAAGA-T 555
||||||||| |||||||| |||||||||||||||||| || || ||||||| |||||| |
Sbjct 420 TGAAAATGCACTGTTGAGTCTTAAGAAGGATAGTCTTGAT-GAGCCAAAATTAGAAGACT 478
Query 556 AATTCTGACATTTTGGATGCTGCTGAGAAAGTAAGGAGACTAAGGGATTCAGCTGCCTCG 615
| ||| || |||||| |||||||||||||||||||||||||| ||||||| |||||||||
Sbjct 479 A-TTCAGAAATTTTGAATGCTGCTGAGAAAGTAAGGAGACTACGGGATTCGGCTGCCTCG 537
Query 616 TTAACATCTTCACATTCAG 634
|||||||||||||||||||
Sbjct 538 TTAACATCTTCACATTCAG 556
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26991025236
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5