BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G07070.1

Length=575
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg470729 jgi|Araly1|470729|fgenesh2_kg.1__683__AT1G07070.1          725    0.0  


> Ahg470729 jgi|Araly1|470729|fgenesh2_kg.1__683__AT1G07070.1
Length=481

 Score =  725 bits (392),  Expect = 0.0
 Identities = 430/448 (96%), Gaps = 3/448 (1%)
 Strand=Plus/Plus

Query  1    AAGGATTCGCTTATTAGGtttttttGAGTTTTCGTCTCCGTTTTCTGAAGGCAA--CTGC  58
            |||||| |||||||||||  ||| |||| ||||||||||||||| |||||||||  ||||
Sbjct  1    AAGGATACGCTTATTAGG-GTTTGTGAGCTTTCGTCTCCGTTTTTTGAAGGCAACGCTGC  59

Query  59   TAATTTCTTCCACCGGACGATTCGACAAAAATGGTGAAAGGACGCCAAGGAGAACGTGTC  118
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  60   TAATTTCTTCCACCGGACGATTCGACAAAAATGGTGAAAGGACGCCAAGGAGAACGTGTC  119

Query  119  AGACTCTATGTCAGGGGAACCATACTTGGCTACAAAAGGTCGAAGTCAAACCAGTATCCC  178
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  120  AGACTCTATGTCAGGGGAACCATACTTGGCTACAAAAGGTCGAAGTCAAACCAGTATCCG  179

Query  179  AACACGTCACTAGTCCAAGTCGAGGGAGTTAACACCACTGAGGAAGTGTCATGGTACAAA  238
            || ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  180  AATACGTCCCTAGTCCAAGTCGAAGGAGTTAACACCACTGAGGAAGTGTCATGGTACAAA  239

Query  239  GGTAAAAGGATGGCTTACATCTACAAAGCCAAGACCAAGAAGAACGGTAGTCACTACCGA  298
            |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  240  GGTAAACGAATGGCTTACATCTACAAAGCCAAGACCAAGAAGAACGGTAGTCACTACCGA  299

Query  299  TGCATTTGGGGCAAAGTCACAAGGCCTCACGGTAACAGTGGCGTTGTTCGAGCCAAATTC  358
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  300  TGCATTTGGGGCAAAGTCACTAGGCCTCACGGTAACAGTGGCGTTGTTCGAGCCAAATTC  359

Query  359  ACATCAAACTTGCCTCCTAAATCAATGGGATCTCGAGTTCGAGTGTTTATGTATCCGAGT  418
            ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  360  ACATCAAACTTGCCTCCTAAATCAATGGGATCTCGAGTTCGAGTGTTCATGTATCCGAGT  419

Query  419  AACATTTAAAGCAGTGTGTACTCGTCAT  446
            ||||||||||||  ||||||||||||||
Sbjct  420  AACATTTAAAGCTCTGTGTACTCGTCAT  447



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21023729539


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5