BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G07120.1
Length=1294
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470733 jgi|Araly1|470733|fgenesh2_kg.1__687__AT1G07120.1 1945 0.0
> Ahg470733 jgi|Araly1|470733|fgenesh2_kg.1__687__AT1G07120.1
Length=1310
Score = 1945 bits (1053), Expect = 0.0
Identities = 1230/1313 (94%), Gaps = 22/1313 (2%)
Strand=Plus/Plus
Query 1 ATGTTACCTAATGGAGAAGATGATTCAGATCTCCTGCGTCTGGTGAAGGAGCTTCAAGCC 60
|||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct 1 ATGTTACCTAATGGAGAAGATGATTCGGATCTCATGCGTCTGGTGAAGGAGCTTCAAGCC 60
Query 61 TATCTAGTGAGGAACGATAAGCTGGAGAAGGAAAATCATGAGCTGCGTCAAGAAGTTGCC 120
| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCTCTAGTGAGGAACGATAAGTTGGAGAAGGAAAATCATGAGCTGCGTCAAGAAGTTGCC 120
Query 121 CGTCTAAGAGCACAAGTAAGCAATCTTAAATCACATGAAAATGAGAGGAAATCAATGCTA 180
|||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| ||
Sbjct 121 CGTCTAAGAGCACAAGTAAGCAATCTTAAAGCACATGACAATGAGAGGAAATCAATGTTA 180
Query 181 TGGAAGAAGTTGCAGAGCTCATATGATGGCAGCAACACAGACGGATCTAACCTGAAAGCG 240
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 181 TGGAAGAAGTTGCAGAGCTCATATGATGGCAGCAACACAGACGGATCTAATCTGAAAGCG 240
Query 241 CCAGAGAGTGTCAAATCCAACACAAAGGGTCAAGAGGTCAGAAATCCAAATCCCAAGCCA 300
|||||||||||||||||||||||||||||||||||| | || |||||||| |||||||||
Sbjct 241 CCAGAGAGTGTCAAATCCAACACAAAGGGTCAAGAGATAAGGAATCCAAACCCCAAGCCA 300
Query 301 ACGATCCAAGGTCAGTCTACAGCAACAAAGCCGCCACCACCTCCACCACTTCCATCAAAG 360
| | |||||| ||| ||||||| | ||||||||| ||||||||||||||||||||||||
Sbjct 301 ATGGTCCAAGAACAGCCTACAGCGATAAAGCCGCCGCCACCTCCACCACTTCCATCAAAG 360
Query 361 AGAACACTTGGAAAAAGATCTGTGCGGCGTGCTCCAGAAGTCGTAGAGTTTTATCGTGCC 420
| ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 361 ACAACACTTGGAAAAAGATCTGTGCGGCGTGCTCCTGAAGTTGTAGAGTTTTATCGTGCC 420
Query 421 CTGACGAAGAGAGAGTCTCATATGGGGAACAAGATCAATCAGAATGGAGTTTTGTCGCCT 480
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 421 CTGACGAAGAGAGAGTCTCATATGGGGAACAAGATCAATCAAAATGGAGTTTTGTCACCT 480
Query 481 GCATTCAACAGAAACATGATTGGTGAAATCGAGAATCGCTCCAAATATCTTTCAGATATT 540
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GCATTCAGCAGAAACATGATTGGTGAAATCGAGAATCGCTCCAAATATCTTTCAGATATT 540
Query 541 AAATCTGACACTGACAGACACAGAGATCATATCCATATCTTGATTAGTAAAGTGGAAGCT 600
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |
Sbjct 541 AAATCTGACACTGACAGACACAGAGATCATATCCATATCTTGATTAGTAAGGTGGAGGGT 600
Query 601 GCAACATTTACAGACATATCAGAAGTGGAGACATTTGTGAAATGGATAGACGAAGAACTA 660
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GCAACATTTACAGATATATCAGAAGTGGAGACATTTGTGAAATGGATAGACGAAGAACTA 660
Query 661 TCTTCCTTGGTAGATGAAAGGGCAGTCCTAAAGCATTTCCCTAAATGGCCAGAACGCAAA 720
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 TCTTCCTTGGTTGATGAAAGGGCAGTCCTAAAGCATTTCCCTAAATGGCCAGAACGCAAA 720
Query 721 GTAGATTCAC-TAAGAGAGGCTGCTTGCAATTACAAAAGGCCAAAGAACCTTGGAAAT-G 778
| ||||| || |||||||||||||||||||||||||||||| ||||||||||| |||| |
Sbjct 721 GCAGATT-ACCTAAGAGAGGCTGCTTGCAATTACAAAAGGCTAAAGAACCTTG-AAATTG 778
Query 779 AGATTTTGTCATTCAAGGACAATCCAAAAGATTCTCTGACGCAGGCCTTGCAAAGGATTC 838
|||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||
Sbjct 779 AGATTTTGTCATTCAAGGACAATCCAAAGGAATCTCTGACGCAAGCCTTGCAAAGGATTC 838
Query 839 AATCGTTGCAAGACAGGTTAGAGGAAAGTGTTAACAACACAGAGAAGATGAGAGACAGTA 898
||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 839 AATCGCTGCAAGACAGGTTAGAGGAAAATGTTAACAACACAGAGAAGATGAGAGACAGTA 898
Query 899 CAGGGAAAAGATACAAGGATTTTCAGATACCTTGGGAGTGGATGCTCGACACAGGACTGA 958
||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 899 CAGGGAAGAGATACAAGGACTTTCAGATACCGTGGGAGTGGATGCTCGACACAGGACTGA 958
Query 959 TTGGACAGCTAAAATACAGCTCGCTGAGGCTAGCTCAGGAGTATATGAAGCGAATA-GCG 1017
||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| ||
Sbjct 959 TTGGACAGCTAAAATACAGGTCGCTGAGGCTAGCTCAGGAGTACATGAAGCGAATAAGC- 1017
Query 1018 AAGGAGCTGGAATCAAATGGAAGTGGTAAAGAAGGAAATCTTATGCTTCAAGGGGTTCGA 1077
|| |||||||||||||||||| | | ||||||||||||||||||||||||||||||||||
Sbjct 1018 AACGAGCTGGAATCAAATGGAGGCGCTAAAGAAGGAAATCTTATGCTTCAAGGGGTTCGA 1077
Query 1078 TTTGCCTACACAATACACCAGTTTGCTGGCGGTTTTGATGGAGAAACATTAAGCATATTT 1137
|||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct 1078 TTTGCCTACACAATACACCAGTTTGCTGGCGGTTTTGACGGAGAAACATTAGGCATATTT 1137
Query 1138 CACGAGCTAAAGAAGATCACTACAGGTGAAACCAGAGGATAAGGATGTAACTGTT----T 1193
|||||||||||||| |||| |||| ||||||||||| ||||||||||||| |||| |
Sbjct 1138 CACGAGCTAAAGAATATCAGTACAAGTGAAACCAGATGATAAGGATGTAATTGTTGACAT 1197
Query 1194 G---A-GTGTCAACGACTTGTGAAATTATGACGCAGTA-A---G-AA-A--CTAGAGGAC 1241
| || |||| |||||||||||||||||||||||| | | || | || ||||||
Sbjct 1198 CTTTAAGTATCAAAGACTTGTGAAATTATGACGCAGTAGACATGTAAGAAACTGGAGGAC 1257
Query 1242 TAAATTATTGTACTATTGAAGCCTTGGTTGCTTTAGCAAATATTTTAATGTCT 1294
|||||||||||||||||||||||||| ||||||||||| |||||||| |||||
Sbjct 1258 TAAATTATTGTACTATTGAAGCCTTGTTTGCTTTAGCAGATATTTTATTGTCT 1310
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48377981673
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5