BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G07128.1
Length=797
Score E
Sequences producing significant alignments: (Bits) Value
Ahg919434 jgi|Araly1|919434|scaffold_100715.1 760 0.0
> Ahg919434 jgi|Araly1|919434|scaffold_100715.1
Length=517
Score = 760 bits (411), Expect = 0.0
Identities = 464/490 (95%), Gaps = 2/490 (0%)
Strand=Plus/Minus
Query 22 GAACACGATAACAACTTTGACCAAGCTTTAAACACTCCAACCAGTGCAAGATCTCCGCGT 81
||| |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 489 GAATACGATAACAACTTTGACCGAGCCTTAAACACTCCAACCAGTGCAAGATCTCCGCGT 430
Query 82 TCGGGTCTCTCTCGGCCACCGCCACA-TTAGCCGTGATCTGCATCACTCCTCTGTACGAG 140
|||||||||||||| ||||| ||||| || ||||||||||||||||||||||||||||||
Sbjct 429 TCGGGTCTCTCTCGACCACCACCACAGTT-GCCGTGATCTGCATCACTCCTCTGTACGAG 371
Query 141 CCGACGCGGCCGCGAACGCGAGCCACGGCTCCGATTCTGATTTGTGCGGCTTGTTTCCGC 200
||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 370 CCGACGCGGCCGCGAACGCGAGCCACGGCTCCGATTCTGATCTCTGCGGCTTGTTTCCGC 311
Query 201 GCGGCACTTGCGAGCAGCAGAATCGTGGCTGGATCCCACCGGGAGAAGTAAGAAGACGTG 260
|||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct 310 GCGGCACTAGCGAGCAGCAGAATCGTGTCTGGATGCCACCGGGAGAAGTAAGAAGACGTG 251
Query 261 AGTTGGTTGAGCCACATGACGCACGTGACGCAGCCGGTGCCATCGTCGACGCCGAACTTG 320
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 250 AGTTGGTTGAGCCACAGGACGCACGTGACGCAGCCGGTGCCATCGTCGACGCCGAACTTG 191
Query 321 AGAAACTTTGGGGTCAGATCACGAGAGACGATTGTGCCTACTATCTCTACGCGTGAAACG 380
|| ||||| |||||||| |||||||||||||||||||||||| ||||||||||||| |||
Sbjct 190 AGGAACTTAGGGGTCAGGTCACGAGAGACGATTGTGCCTACTGTCTCTACGCGTGAGACG 131
Query 381 CACGCTCCGCCAAGCAGAGAGAAAGAGTTGGATTCTGTAGGTGACTGTGTCAGGCGTTGG 440
||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 130 CACGCGCCGCCAAGTAGGGAGAAAGAGTTGGATTCTGTAGGTGACTGTGTCAGGCGTTGG 71
Query 441 ATGTCACGCGCCACGAGTTTTGCGTGTGTGCTTTGGAGGGATCGATCCATGGCTGGGACT 500
|||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||| |||
Sbjct 70 ATGTCACGCGCCACTAGTTTCGCGTGTGTGTTTTGGAGGGATCGATCCATGGCTGGAACT 11
Query 501 GGAGAGAAGA 510
|| |||||||
Sbjct 10 GGTGAGAAGA 1
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29430891924
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5