BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G07135.1

Length=732
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg470734 jgi|Araly1|470734|fgenesh2_kg.1__688__AT1G07135.1          680    0.0  


> Ahg470734 jgi|Araly1|470734|fgenesh2_kg.1__688__AT1G07135.1
Length=552

 Score =  680 bits (368),  Expect = 0.0
 Identities = 507/567 (89%), Gaps = 37/567 (7%)
 Strand=Plus/Plus

Query  13   AAACAAGAGAAAAGATAAAGAAAATGGGTTTGAGAAGAACATGGTTGGTTTTGTACATTC  72
            |||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct  1    AAACAAAAGAAAAGATAAAGAAAATGGGTTTGAGAACAACATGGTTGGTTTTGTACATTC  60

Query  73   TCTTCATCTTTCATCTTCAGCACAATCTTCCTTCCGTGAGCTCACGACCTTCCTCAGTCG  132
            ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
Sbjct  61   TCTTCATCTTTCATCTTCAGCACAATCTTACTTCCGTGAGCTCACGACCTTCCTCAGTAG  120

Query  133  ATACAAACCACGAGACTCTCCCTTTTAGTGTTTCAAAGCCAGACGTTGTTGTGTTT-GAA  191
            |||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct  121  ATACAAACCACGAGGCTCTCCCTTTTAGTGTTTCAAAGCCAGACGTTGTTGT-TTTCGAA  179

Query  192  GGAAAGGCTCGGGAATTAGCTGTCGTTATCAAAAAaggaggaggtggaggaggtggagga  251
            ||||||||||||||||||||||||||||||||||  | ||||||   |||   |||||||
Sbjct  180  GGAAAGGCTCGGGAATTAGCTGTCGTTATCAAAA--G-AGGAGG---AGG---TGGAGGA  230

Query  252  cgcggaggcggtggagcacgaagcggcggtaggagcaggggaggaggaggtGGCAGCAGT  311
            |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct  231  CGCGGAGGCGGTGGAGCACGAAGCGGCGGTAGCAGCAGGAGAGGAGGAGGTGGCAGCAGT  290

Query  312  AGTAGCCGCAGCCGTGACTGGAAACGCGGCGGAGGGGTGGTTCCGATTCATACGGGTGGT  371
            || |||||||||||||||||| |||| || ||||| ||| ||||||||||||||||||||
Sbjct  291  AGCAGCCGCAGCCGTGACTGGCAACGTGGTGGAGGAGTGATTCCGATTCATACGGGTGGT  350

Query  372  GGTAATGGCAGTCTGGGTGGTGGATCGGCAGGATCACATAGATCAAGCGGCAGCATGAAT  431
            || | |  | |   |          |   |||||||||||||||||||||||||| ||||
Sbjct  351  GG-A-T--C-G---G----------C---AGGATCACATAGATCAAGCGGCAGCAGGAAT  389

Query  432  CTTCGAGGAACAATGTGTGCGGTCTGTTGGTTGGCTTTATCGGTTTTAGCCGGTTTAGTC  491
            |||||||||||| |||||||| || ||||||||||||||||||||||||| |||||||||
Sbjct  390  CTTCGAGGAACAGTGTGTGCGTTCGGTTGGTTGGCTTTATCGGTTTTAGCTGGTTTAGTC  449

Query  492  TTGGTTCAGTAGGGTTCAGAGTAATTATTGGCCATTTATTT-ATT---GGTTTTGTAACG  547
            |||||||||||||||||||||||||  |||||||||||||| |||   |||||| |||||
Sbjct  450  TTGGTTCAGTAGGGTTCAGAGTAATCGTTGGCCATTTATTTTATTTTTGGTTTTATAACG  509

Query  548  TTTATGTTTGTGGTCCGGTCTG-ATAT  573
             |||||||| |||||||||||| ||||
Sbjct  510  GTTATGTTTATGGTCCGGTCTGTATAT  536



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26952902319


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5