BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G07150.1
Length=1518
Score E
Sequences producing significant alignments: (Bits) Value
Ahg334013 jgi|Araly1|334013|fgenesh1_pg.C_scaffold_1000578 1801 0.0
Ahg344762 jgi|Araly1|344762|fgenesh1_pg.C_scaffold_4001104 453 2e-126
> Ahg334013 jgi|Araly1|334013|fgenesh1_pg.C_scaffold_1000578
Length=2118
Score = 1801 bits (975), Expect = 0.0
Identities = 1267/1401 (90%), Gaps = 48/1401 (3%)
Strand=Plus/Plus
Query 19 ATGGAGAAACAGAGCATCAGAAACACTTGTTCTTCTTCTTTAATGTTATCCTCACCATCT 78
|||||||||||||| |||||||||| |||||||||||| || | || | | |||||
Sbjct 1 ATGGAGAAACAGAGTATCAGAAACATTTGTTCTTCTTC-TTCTTCTT-TAAT-GTCATCT 57
Query 79 TCTTTTTGGGTTCGTGGTGCGTGTATCGGCAGAGGTTGTTTCGGTGCAGTTAGTACGGCG 138
|||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 58 TCTTCTTGGGTTCGTGGTGCGTGTATCGGAAGAGGTTGTTTCGGTGCAGTTAGTACGGCG 117
Query 139 ATCAGCAAAACCAACGGTGAAGTTTTCGCCGTGAAATCCGTGGATCTCGCCACGAGTCTC 198
|||||||||||||||||||||||||| ||||||||||||||||||||| |||| |||||
Sbjct 118 ATCAGCAAAACCAACGGTGAAGTTTTTGCCGTGAAATCCGTGGATCTCACCACTTGTCTC 177
Query 199 CCCACTCAATCAGAGTCTCTCGAGAACGAAATATCTGTCTTCCGCTCGCTAAAGCCTCAC 258
||||| |||||||||||||||||||||||||| |||||| || | ||||| |||||||||
Sbjct 178 CCCACCCAATCAGAGTCTCTCGAGAACGAAATCTCTGTCCTCTGTTCGCTCAAGCCTCAC 237
Query 259 CCTTACATCGTGAAGTTTCTCGGCGACGGAGTCTCGAAAGAAGGAACGACGACGTTTAGG 318
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 CCTCACATCGTGAAGTTTCTCGGCGACGGAGTCTCGAAAGAAGGAACGACGACGTTTAGG 297
Query 319 AATCTCTACTTAGAGTATCTCCCA-AACGGTGACGTGGCTAGTCACAGAGCCGGAGGAAA 377
||||||||||| |||||||| ||| || ||||||||||||| | ||| | |||||||
Sbjct 298 AATCTCTACTTGGAGTATCTACCAGAA-GGTGACGTGGCTAATTACACTGTTGGAGGAAT 356
Query 378 -AATCGAAGACGAGACTCTGCTCCAGCGTTACACGGCGTGTCTTGTCTCTGCTCTCCGCC 436
|| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 TAA-CGA---CGAGACTCTGCTCCAGCGTTACACGGCGTGTCTTGTCTCTGCTCTCCGCC 412
Query 437 ACGTACACTCTCAAGGATTCGTTCACTGCGACGTCAAGGCGAGGAACATCCTCGTCAGCC 496
|||| |||||||| ||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 413 ACGTCCACTCTCATGGATTCGTTCACTGCGACGTCAAGGCGAGAAACGTCCTCGTCAGCC 472
Query 497 AAAGCTCCATGGTCAAGTTAGCCGATTTTGGGTCGGCGTTCAGAATCCACACACCGAGGG 556
||||||||||| ||||| |||||||||| |||||||||||||||||||| ||||| | |
Sbjct 473 AAAGCTCCATGATCAAGCTAGCCGATTTCGGGTCGGCGTTCAGAATCCATACACCAACAG 532
Query 557 CTCTGATCACGCCACGTGGAAGTCCGCTTTGGATGGCTCCGGAGGTGATCAGACGAGAGT 616
| | |||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 533 CACAGATCACGCCACGTGGAAGCCCGCTTTGGATGGCTCCGGAGGTGATCAGACGAGAGT 592
Query 617 ACCAAGGTCCGGAGAGTGACGTCTGGTCTCTCGGCTGCACGATCATCGAGATGTTCACTG 676
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 593 ACCAAGGTCCGGAGAGCGACGTCTGGTCTCTCGGCTGCACGATCATCGAGATGTTTACTG 652
Query 677 GGAAACCCGCTTGGGAAGACCACGGAATT---GACTCGCTGAGTCGAATCAGTTTCTCTG 733
||||||||||||||||||||||||| ||| |||||||||||||||||| ||||||| |
Sbjct 653 GGAAACCCGCTTGGGAAGACCACGGGATTATAGACTCGCTGAGTCGAATCGGTTTCTCCG 712
Query 734 ACGAGTTACCGGTTTTCCCCTCGAAGTTGTCGGAAATCGGCCGTGATTTCCTAGAAAAGT 793
|||||||||||||||||||||||||| |||||||||||||| |||| |||||||||||||
Sbjct 713 ACGAGTTACCGGTTTTCCCCTCGAAGCTGTCGGAAATCGGCTGTGACTTCCTAGAAAAGT 772
Query 794 GTCTGAAGCGAGACCCGAATCAGAGGTGGAGTTGCGATCAGCTTTTGCAGCATCCATTTC 853
|||| ||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 773 GTCTAAAGAGAGACCCGAATCAGAGATGGAGTTGCGATCAGCTTTTGCAGCATCCTTTTC 832
Query 854 TCTCTCAGTGTCACAACTCATCTCCGACTGAGTCATCTCCGCGTTGCGTACTTGACTGGG 913
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 833 TGTCTCAGTGTCACAACTCGTCTCCGACTGAGTCATCTCCGCGTTGCGTACTTGACTGGG 892
Query 914 TCAACTCGGGGTTTGACTTAGAAGAAGAAGAAGAGGAAGTAGGGAGATCAGAATTCGAAG 973
||||||| || |||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 893 TCAACTCCGGATTTGACTTAGAAGAAGAAGAGGAGGAAGTAGGAAGATCAGAATTCGAAG 952
Query 974 ACGCGGCGAAGGCAATAATTTGTAATTTGGCGACGACCGGAGGAGTAATTTGGGAGTCAG 1033
||||||||| ||||| ||||||||||||||||||||||||||| | ||||||||| ||||
Sbjct 953 ACGCGGCGATGGCAAGAATTTGTAATTTGGCGACGACCGGAGGGGCAATTTGGGAATCAG 1012
Query 1034 ATGGTTGGGTGGAAGTTAGATGCCACGCTTCGGAAGAGGAAGGGACAACAATGGAATATT 1093
|||||||||||||||| ||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 1013 ATGGTTGGGTGGAAGTCAGATGCCACTCTTCGGAAGAGGAAGGGACAAGAATGGAATATT 1072
Query 1094 CGGGATCCACAAGGGTAGAATCGGAATATAACACATCATCGGATCCAAACGATGACGTGG 1153
|||||||||||||||||| ||||| ||||||||||||||||||||| |||||||||||
Sbjct 1073 CGGGATCCACAAGGGTAGTATCGGCATATAACACATCATCGGATCCGTACGATGACGTG- 1131
Query 1154 CTGGTGACTCGGCGATAATTGACGTTTCTATGTCTCAGAATTTACCGCCTGGAAACGGGG 1213
| | | ||||||||||||| |||| | ||| ||||| ||||||||||
Sbjct 1132 C------C--G---ATAATTGACGTTT--ATGT----G--TTT-CCGCCGGGAAACGGGG 1171
Query 1214 GATCGGCGGCGGCGCTGC--C-ATATGAATTTGTGGTGGTTTTACATTTATTAATGGAAA 1270
|||||||||||||||||| | ||||||||| ||| ||||||||||||||||||||||||
Sbjct 1172 GATCGGCGGCGGCGCTGCTGCCATATGAATTAGTGATGGTTTTACATTTATTAATGGAAA 1231
Query 1271 TTATGGTTTATACTACATGTATCTTTAGGGAAATTGTTCTCACTATGTATT-T-GTT--- 1325
||| |||||||||||||||| ||||||| ||||||| |||| |||| ||| | |||
Sbjct 1232 TTACGGTTTATACTACATGTGTCTTTAGCAAAATTGTCCTCATTATGAATTGTTGTTATC 1291
Query 1326 -GTATCA--GT-ATAATCA-AAGCAATAAACTCGAAACGTTGTCTTTTAATCACAGCCTC 1380
|||||| || ||||| | || |||||||||||||||||||||||||||||||||||||
Sbjct 1292 AGTATCATCGTGATAATAATAA-CAATAAACTCGAAACGTTGTCTTTTAATCACAGCCTC 1350
Query 1381 AAGTTTTGTTTGTTTGCACAT 1401
|||||||||||||||||||||
Sbjct 1351 AAGTTTTGTTTGTTTGCACAT 1371
> Ahg344762 jgi|Araly1|344762|fgenesh1_pg.C_scaffold_4001104
Length=1239
Score = 453 bits (245), Expect = 2e-126
Identities = 828/1098 (75%), Gaps = 86/1098 (8%)
Strand=Plus/Plus
Query 76 TCTTCTTTTTGGGTTCGTGGTGCGTGTATCGGCA-GAGGTTGTTTCGGTGCAGTTAGTAC 134
||||||| |||| |||||||| | ||||| || | |||||||||| ||| | ||||| |
Sbjct 31 TCTTCTTCTTGGATTCGTGGTTCTTGTATTGG-ACGAGGTTGTTTTGGTTCCGTTAGCAA 89
Query 135 GGCGATCAGCAAAACCAACGGTGAAGTTTTCGCCGTGAAATCCGTGGATCTCGCCACGAG 194
|| | || |||| | |||||| ||||||||||||||| || | || ||| ||||| |
Sbjct 90 AGCTTTGAGTAAAATCGACGGTGGAGTTTTCGCCGTGAAGTCTATAGACCTCTCCACGTG 149
Query 195 TCTCCCCACTCAATCAGAGTC-TCTCGAGAACGAAAT--ATCTGTCTTCCGCTCGCTAAA 251
||| || ||||| | ||||| | | ||||||||||| | | || |||| ||| | ||
Sbjct 150 TCTTCCTTCTCAAGCCGAGTCGT-TAGAGAACGAAATCGTTAT-TC-TCCGGTCGATGAA 206
Query 252 GCCTCACCCTTACATCGTGAAGTTTCTCGGCGACGGA-GTCTCGAAAGAAGGAACGACGA 310
| |||| || |||| |||| |||||||||||| || || || |||||||||||||||
Sbjct 207 GTCTCATCCAAACATAGTGAGGTTTCTCGGCGA-TGACGTTTCTAAAGAAGGAACGACGT 265
Query 311 CGTTTAGGAATC-TCTACTTAGAGTA-TCTCCCAAACGGTGACGTGGCTAGTCACAGAGC 368
||||| | |||| || | |||||||| || || || |||||||| | | || | |
Sbjct 266 CGTTTCGTAATCTTC-ATTTAGAGTATTCACCGGAA-GGTGACGT-G---G-CA-A-A-- 314
Query 369 CGGAGGAAAAATCGAAGACGAGACTCTGCTCCAGCGTTACACG-GCGTGTCTTGTCTCTG 427
||| |||| || | |||| || || |||| ||||||| | | ||||||||||||||
Sbjct 315 CGGTGGAATTGTC--A-ACGAAACGCTTCTCCGGCGTTACGTGTG-GTGTCTTGTCTCTG 370
Query 428 CTCTCCGCCACGTACACT-CTCAA-GG-ATTCGTTCACTGCGACGTCAAGGCGAGGAAC- 483
|||| | ||||| || | || || || ||| |||||||||||||| || | | ||||
Sbjct 371 CTCTGAGTCACGTTCA-TGCT-AACGGAATT-GTTCACTGCGACGTTAAATCTAAGAACG 427
Query 484 ATCCT-CG--TCA-GCCA-AAGCTCCATGGTCAAGTTAGCCGATTTTGGGTCGGC-GTTC 537
|| | | | | | | |||||| || ||| | || |||||||| ||||| |||
Sbjct 428 TTCTTGTGTTTAACGGTAGTAGCTCC---GTTAAGCTGGCGGATTTTGGATCGGCGGTTG 484
Query 538 AGAATCCACACACCGAGGGCTC-TGATCACGCCACGTGGAAGTCCGCTTTGGATGGCTCC 596
| | | | | ||| || || | | |||||||||||||||||||||||||||||||
Sbjct 485 TG-TTTGAGAAATCGACGGTTCAGGCT-TCGCCACGTGGAAGTCCGCTTTGGATGGCTCC 542
Query 597 GGAGGTGATCAGACGAGAGTACCAAGGTCCGGAGAGTGACGTCTGGTCTCTCGGCTGCAC 656
||||||||| ||||| ||||||||||| |||||||||||||| |||||| | || || ||
Sbjct 543 GGAGGTGATTAGACGTGAGTACCAAGGACCGGAGAGTGACGTGTGGTCTTTAGGATGTAC 602
Query 657 GATCATCGAGATGTTCACTGGGAAACCCGCTTGGGAAGACCACGGAATT-GACTCGCTGA 715
| |||| |||||| |||| || ||||| || |||||||| ||||| || ||||||||||
Sbjct 603 GGTCATAGAGATGCTCACCGGAAAACCAGCCTGGGAAGATCACGGT-TTCGACTCGCTGA 661
Query 716 GTCGAATCAG-TTTCTCTGACGAGTTACCGGTT-TTCCC-CTCGAAGTTGTCGGAAATCG 772
|||| ||| | ||| ||| ||||||| || || |||| | || || |||||| |||
Sbjct 662 GTCGGATCGGGTTT-TCTAACGAGTTGCCATTTATTCCGGCGGGA--TTATCGGAACTCG 718
Query 773 GCCGTGATTTCCTAGA-AAAGTGTCT-GAAGCGAGACCCGAATCAGAGGTGGAGTTGCGA 830
| | |||||| | || ||| || || ||| || || | || |||| |||||||||| ||
Sbjct 719 GGAGAGATTTCTTGGAGAAA-TG-CTTGAAACGTGATCGGAGTCAGCGGTGGAGTTGTGA 776
Query 831 TCAGCTTTTGCAGCATCCATTTCTCTCTCA-GTGTCA-CA--ACTCAT-CTCCGACTGAG 885
|||||||||||||||||| ||||| | ||| | ||| || |||| | || ||| |||
Sbjct 777 TCAGCTTTTGCAGCATCCGTTTCTGTTTCAAGA-TCATCATGACTCGTTCTT-GACCGAG 834
Query 886 TCATCTCCGCGTTGCGTACTTGACTGGGTCAACTCGGGGTTTGACTTAGAAGAAGAAGAA 945
|| |||||||||||||| ||||||||||||||||||| ||| ||| |||||||||||
Sbjct 835 TCGTCTCCGCGTTGCGTTCTTGACTGGGTCAACTCGGAGTTCGAC---GAAGAAGAAGA- 890
Query 946 GAGGAA-GTAG-GGAGATCAGAATTCGAAGACG-CGGCGAA-GGCAATAATTTGTAATTT 1001
||| || | || ||||| |||||| | | | | || || ||||| || |||| ||
Sbjct 891 GAGCAACG-AGTGGAGACCAGAATCC-ATGGTTTCAGC-AATGGCAAGGATAAGTAAATT 947
Query 1002 GGCGACGACCGGAGGAGTAATTTGGGAGTC-AGATGGTTGGG-TGGAAGTTAGATGCCAC 1059
|||| |||||||| | || |||||| || | |||||||| || | |||||| | |||
Sbjct 948 AGCGATAACCGGAGGGGCAAATTGGGAATCTA-ATGGTTGGACTG-AGGTTAGA-GACAC 1004
Query 1060 GCTTCGGAAGAGGAAGGGACAACAATGGAATATTCGGGATCCA-CAAGGGTAGAATCGGA 1118
||| |||||| |||| ||| || |||| ||| | | || |||||||||||| ||
Sbjct 1005 --TTCCGAAGAGTCAGGGGCAATAAAGGAAG-TTCCTGTTTCAACAAGGGTAGAATTGGG 1061
Query 1119 ATATAACACATCATCGGA 1136
|| |||||||||||||||
Sbjct 1062 ATTTAACACATCATCGGA 1079
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56830645540
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5