BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G07160.1
Length=1460
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470736 jgi|Araly1|470736|fgenesh2_kg.1__690__AT1G07160.1 1766 0.0
Ahg481911 jgi|Araly1|481911|fgenesh2_kg.4__971__AT2G30020.1 516 2e-145
> Ahg470736 jgi|Araly1|470736|fgenesh2_kg.1__690__AT1G07160.1
Length=1304
Score = 1766 bits (956), Expect = 0.0
Identities = 1162/1259 (92%), Gaps = 24/1259 (2%)
Strand=Plus/Plus
Query 39 AAAAAGGAAACTTTTAAGTTTTCTACGAAACGATGTCGTCTTCAGTTGCCGTTTGCAACT 98
|||||| ||||||||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 1 AAAAAGTAAACTTTTAAGTTTTATACGAAACGATGTCGTTTTCAGTTGCCGTTTGCAACT 60
Query 99 CACCGGTGTTCTCTCCGTCTTCGTCTCTTTTCTGCAACAAACCGTTGAACACTTCTCCGG 158
| ||||||||||||||||| ||||| |||||||||||||||||||||| || |||||| |
Sbjct 61 CGCCGGTGTTCTCTCCGTCCTCGTCACTTTTCTGCAACAAACCGTTGATCATTTCTCCTG 120
Query 159 CACATGAAACCCTAACCCTGTCTCTTTCCCATCTCAATCCTCCCGTTTCTTCTACTTCTC 218
| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 121 CGCATGAAACCCTAACCCTGTCTCTTTCCCATCTCAATCCTCCCGTTTCTTCTCCTTCTA 180
Query 219 CTT-C-C-GCCGCGTCTCCCACATCTCCGTTCTGCCTCCGTCTCCTGAAACCGCCGGCTA 275
||| | | || |||||||||||||||||||||||||||||||||| |||||| | |||||
Sbjct 181 CTTCCTCTGCTGCGTCTCCCACATCTCCGTTCTGCCTCCGTCTCCCGAAACCACAGGCTA 240
Query 276 AACTAGGGTTTGGATCGGACTCTGGTCCGGGAAGCATTCTGAAGAGGAAACGACCGACGA 335
||| |||||||||||| ||| ||||||| ||| || |||| |||||||||||||||| ||
Sbjct 241 AACAAGGGTTTGGATCCGACCCTGGTCCCGGAGGCGTTCTTAAGAGGAAACGACCGATGA 300
Query 336 CGCTTGATATACCGGTGGCTCCGGTTGGTATTGCAGCTCC--TAT-----A--TC---GA 383
||||||||||||||||||||||||||| ||||||||||| ||| | | ||
Sbjct 301 GGCTTGATATACCGGTGGCTCCGGTTGGCATTGCAGCTCCGATATCGGAAACGGCGGTGA 360
Query 384 ATGCAGATACGCCGAGGGAGGAGAGTAGAGCA-GTGGAGAGGGAAGGTGATGGTTACTCT 442
||||| | ||||||||||||||||| |||| | ||||||||||||||||||||||||||
Sbjct 361 ATGCACAGACGCCGAGGGAGGAGAGCAGAG-AGGTGGAGAGGGAAGGTGATGGTTACTCG 419
Query 443 GTTTATTGCAAGAGAGGTAAAAGAGAAGCTATGGAGGATCGTTTCTCTGCCATCACTAAT 502
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct 420 GTTTATTGCAAGAGAGGTAAAAGAGCAGCTATGGAGGATCGTTTCTCTGCCATCACAAAT 479
Query 503 CTTCAAGGAGATCCCAAACAGGCAATATTCGGAGTCTATGATGGTCACGGAGGACCAACA 562
|||||||||| |||||| |||||||||||||||||||||||||||| |||||||||| |
Sbjct 480 ATTCAAGGAGAACCCAAAAAGGCAATATTCGGAGTCTATGATGGTCATGGAGGACCAATA 539
Query 563 GCGGCTGAGTTTGCGGCTAAGAACTTGTGTAGTAACATTCTTGGCGAGATAGTTGGTGGG 622
||||||||||||||||||||||||||||||| ||||||||| || |||||||||||||||
Sbjct 540 GCGGCTGAGTTTGCGGCTAAGAACTTGTGTAATAACATTCTAGGAGAGATAGTTGGTGGG 599
Query 623 AGGAACGAGTCAAAGATTGAAGAAGCTGTAAAACGTGGTTATCTAGCGACTGATTCTGAG 682
|||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct 600 GGGAACGAGTCAAAGTTTGAAGAAGCAGTAAAACGTGGTTATCTAGCGACTGATTCTGAG 659
Query 683 TTTCTCAAGGaaaaaaaCGTTAAGGGCGGCTCGTGCTGTGTCACGGCTCTGATCAGCGAC 742
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 TTTCTCAAGGAAAAAGACGTTAAGGGCGGCTCGTGCTGTGTCACGGCTCTGATCAGCGAC 719
Query 743 GGAAATCTTGTGGTGGCCAATGCTGGTGACTGCCGTGCTGTTTTGAGCGTTGGAGGATTC 802
|| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 720 GGGAATCTTGTGGTTGCCAATGCTGGTGACTGCCGTGCTGTTTTGAGCGTTGGAGGATAC 779
Query 803 GCGGAGGCCTTGACTTCTGACCACCGCCCTTCCAGAGATGATGAACGAAACAGAATTGAG 862
||||| ||| |||||||||||||||| ||||| || || |||||||||||||||||||||
Sbjct 780 GCGGAAGCCCTGACTTCTGACCACCGACCTTCGAGGGACGATGAACGAAACAGAATTGAG 839
Query 863 AGCTCGGGCGGTTATGTGGATACATTCAATAGTGTTTGGAGAATTCAAGGATCATTAGCG 922
||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||
Sbjct 840 AGCTCGGGCGGTTATGTCGATACATTCAATAGTGTTTGGAGAATCCAAGGATCTTTAGCG 899
Query 923 GTATCTAGAGGAATAGGAGATGCTCATCTCAAACAATGGATAATATCTGAACCAGAGATA 982
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 900 GTATCTAGAGGAATAGGAGATGCTCATCTCAAACAATGGATAATATCTGAACCAGAGACA 959
Query 983 AATATTCTCCGAATCAATCCCCAACACGAGTTCTTGATCTTAGCATCAGATGGTCTATGG 1042
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 960 AAGATTCTCCGAATCAATCCCCAACACGAGTTCTTGATCTTAGCATCAGACGGTCTATGG 1019
Query 1043 GACAAGGTTAGTAATCAGGAGGCAGTAGACATAGCTCGACCATTTTGCAAAGGGACCGAT 1102
||||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||
Sbjct 1020 GACAAGGTTAGTAATCAGGAGGCAGTAGACATAGCTCGACCATTTTGCATAGGAATCGAT 1079
Query 1103 CAGAAACGGAAGCCATTGCTGGCTTGCAAGAAGCTCGTTGACCTCTCTGTATCACGAGGC 1162
|| ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 1080 CAAAAACGGAAGCCATTGTTAGCTTGCAAGAAGCTCGTTGACCTCTCTGTATCACGAGGC 1139
Query 1163 TCCTTGGACGATATTAGTGTGATGTTGATTCAGTTGTGCCACCTCTTCTGACCATAGGAG 1222
||||||||||||||||||||||||||| ||| |||||||| | |||||||||||||||||
Sbjct 1140 TCCTTGGACGATATTAGTGTGATGTTGGTTCCGTTGTGCCGCTTCTTCTGACCATAGGAG 1199
Query 1223 AAATGTAGAGACA-GA-AT-AA-C-A-ACGTTAGAGTCTGAAGTCATTCTTAATTTCTT 1275
||||||| ||||| || | || | | |||||||||| ||||||||||||||||| |||
Sbjct 1200 AAATGTACAGACAAGATAACAATCTAGACGTTAGAGTTTGAAGTCATTCTTAATT-CTT 1257
> Ahg481911 jgi|Araly1|481911|fgenesh2_kg.4__971__AT2G30020.1
Length=1405
Score = 516 bits (279), Expect = 2e-145
Identities = 642/815 (79%), Gaps = 33/815 (4%)
Strand=Plus/Plus
Query 392 ACGCCGAGGGAGGAGAGTAGAGCA-GTGGAGAGGGAAGGTGATGGTTACTCTGTTTATTG 450
|||||||||||||||||||||| | || ||||| ||||||||||||||||||||||||||
Sbjct 401 ACGCCGAGGGAGGAGAGTAGAG-AGGTTGAGAGAGAAGGTGATGGTTACTCTGTTTATTG 459
Query 451 CAAGAGAGGTAA-AAGAGAAGCTATGGAGGATCGTTTCTCTGCCATCACTAATCTTCAAG 509
|||||||| || |||||||||||||||||||||||||||||| ||||| |||||||| |
Sbjct 460 TAAGAGAGG-AAGAAGAGAAGCTATGGAGGATCGTTTCTCTGCTATCACCAATCTTCATG 518
Query 510 GAGATCCCAAACAGGCAATATTCGGAGTCTATGATGGTCACGGAGGACC-AACAGCGGCT 568
|||||| |||||||| ||||| ||||||||||||||||| |||||| || |||||||
Sbjct 519 GAGATCGTAAACAGGCGATATTTGGAGTCTATGATGGTCATGGAGGAGTTAA-AGCGGCT 577
Query 569 GAGTTTGCGGCTAAGAACTT-GTGTA-GTAACATTCTTGGCGAGATAGTTGGTGGGAG-G 625
|||||||||||||||||||| | || | |||||| | | || ||||||||| || |
Sbjct 578 GAGTTTGCGGCTAAGAACTTAGA-TAAG-AACATTGTAGAAGAAATAGTTGGTTTAAGAG 635
Query 626 AACGAGTCAAAGATTGAAGAAGCTGTAAAACGTGGTTATCTAG-CGACTGATTCTGAGTT 684
| |||||| || | | || || || ||||| ||||| || | | || || | | |||
Sbjct 636 A-CGAGTCTGAGGTAGCTGACGCGGTGAAACGCGGTTA-CTTGACAACAGACGCAGCGTT 693
Query 685 TCTCAAGGaaaaaaaCGTTAAGGGCGGCTCGTGCTGTGTCACGGCTCTGATCAGCGACGG 744
||| ||||| ||| | || ||||| || |||||||||||||||||| || | ||||| ||
Sbjct 694 TCTTAAGGAGAAAGATGTCAAGGGTGGTTCGTGCTGTGTCACGGCTTTGGTTAGCGAAGG 753
Query 745 AAATCTTGTGGTGGCCAATGCTGGTGACTGCCGTGCTGTTTTGAGCGTTGGAGGAT-TCG 803
|| ||||| ||| | ||||| |||||||| || |||||| |||| || ||||| | | |
Sbjct 754 GAACCTTGTTGTGTCTAATGCCGGTGACTGTCGCGCTGTTATGAGTGTAGGAGG-TGTGG 812
Query 804 CGGAGGC-CT-TGACTTCTGACCACCGCCCTTCCAGAGATGATGAACG-AAACAGAATTG 860
| |||| || | ||||||| ||||| || || ||||| || ||| | ||| |||||||
Sbjct 813 CTAAGGCTCTAT--CTTCTGATCACCGTCCGTCTAGAGACGACGAAAGGAAA-AGAATTG 869
Query 861 AGAGCTCGGGCGGTTATGTGGATACATT-CAATAGTGTTTGGAGAATTCAAGGATCATTA 919
| | | |||| || ||||| ||||| || || ||||||||||||| || ||||| |||
Sbjct 870 AAACCACGGGTGGATATGTTGATACGTTTCACG-GTGTTTGGAGAATCCAGGGATCTTTA 928
Query 920 GCGGTATCTAGAGGAATAGGAGATGCTCATCTCAA-ACAATGGATAATATCTGAACCAGA 978
|| || || ||||| || ||||||||||| || || | ||||| | ||| ||||||||||
Sbjct 929 GCTGTGTCGAGAGGGATCGGAGATGCTCAACTTAAGA-AATGGGTTATAGCTGAACCAGA 987
Query 979 GATAAATATTCTCC-GAATCAATCCCCAACACGAGTTCTTGATCTTAGCATCAGATGGTC 1037
|| ||| || ||| |||| | | | || |||||||||||||| || |||||||||
Sbjct 988 GACAAAGAT-CTCGAGAATTGAGCAGGACCATGAGTTCTTGATCTTGGCGTCAGATGGTT 1046
Query 1038 TATGGGACAAGGTTAGTAATCAGGAGGCAGTAGACATAGCTCGACCATTTTGCAAAGGGA 1097
||||||| ||||| ||||| || || ||||||||||| ||||| || || ||| ||| |
Sbjct 1047 TATGGGATAAGGTGAGTAACCAAGAAGCAGTAGACATTGCTCGTCCCTTATGCTTAGGAA 1106
Query 1098 CCGATCAGAAACGGAAGCCATTGCTGGCTTGCAAGAAGCTCGTTGACCTCTCTG-TATCA 1156
|||| || | | | | || | || | |||||||| || || ||||| | | |||
Sbjct 1107 CCGAGAAGCCATTGTTGTTA--GCAGCCT-GTAAGAAGCTTGTCGATCTCTCGGCT-TCA 1162
Query 1157 CGAGGCTCCTTGGACGATATTAGTGTGATGTTGAT 1191
|||||||| | ||| ||||| ||||||||||||||
Sbjct 1163 CGAGGCTCGTCGGATGATATCAGTGTGATGTTGAT 1197
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54621411330
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5