BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G07160.1 Length=1460 Score E Sequences producing significant alignments: (Bits) Value Ahg470736 jgi|Araly1|470736|fgenesh2_kg.1__690__AT1G07160.1 1766 0.0 Ahg481911 jgi|Araly1|481911|fgenesh2_kg.4__971__AT2G30020.1 516 2e-145 > Ahg470736 jgi|Araly1|470736|fgenesh2_kg.1__690__AT1G07160.1 Length=1304 Score = 1766 bits (956), Expect = 0.0 Identities = 1162/1259 (92%), Gaps = 24/1259 (2%) Strand=Plus/Plus Query 39 AAAAAGGAAACTTTTAAGTTTTCTACGAAACGATGTCGTCTTCAGTTGCCGTTTGCAACT 98 |||||| ||||||||||||||| |||||||||||||||| |||||||||||||||||||| Sbjct 1 AAAAAGTAAACTTTTAAGTTTTATACGAAACGATGTCGTTTTCAGTTGCCGTTTGCAACT 60 Query 99 CACCGGTGTTCTCTCCGTCTTCGTCTCTTTTCTGCAACAAACCGTTGAACACTTCTCCGG 158 | ||||||||||||||||| ||||| |||||||||||||||||||||| || |||||| | Sbjct 61 CGCCGGTGTTCTCTCCGTCCTCGTCACTTTTCTGCAACAAACCGTTGATCATTTCTCCTG 120 Query 159 CACATGAAACCCTAACCCTGTCTCTTTCCCATCTCAATCCTCCCGTTTCTTCTACTTCTC 218 | ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 121 CGCATGAAACCCTAACCCTGTCTCTTTCCCATCTCAATCCTCCCGTTTCTTCTCCTTCTA 180 Query 219 CTT-C-C-GCCGCGTCTCCCACATCTCCGTTCTGCCTCCGTCTCCTGAAACCGCCGGCTA 275 ||| | | || |||||||||||||||||||||||||||||||||| |||||| | ||||| Sbjct 181 CTTCCTCTGCTGCGTCTCCCACATCTCCGTTCTGCCTCCGTCTCCCGAAACCACAGGCTA 240 Query 276 AACTAGGGTTTGGATCGGACTCTGGTCCGGGAAGCATTCTGAAGAGGAAACGACCGACGA 335 ||| |||||||||||| ||| ||||||| ||| || |||| |||||||||||||||| || Sbjct 241 AACAAGGGTTTGGATCCGACCCTGGTCCCGGAGGCGTTCTTAAGAGGAAACGACCGATGA 300 Query 336 CGCTTGATATACCGGTGGCTCCGGTTGGTATTGCAGCTCC--TAT-----A--TC---GA 383 ||||||||||||||||||||||||||| ||||||||||| ||| | | || Sbjct 301 GGCTTGATATACCGGTGGCTCCGGTTGGCATTGCAGCTCCGATATCGGAAACGGCGGTGA 360 Query 384 ATGCAGATACGCCGAGGGAGGAGAGTAGAGCA-GTGGAGAGGGAAGGTGATGGTTACTCT 442 ||||| | ||||||||||||||||| |||| | |||||||||||||||||||||||||| Sbjct 361 ATGCACAGACGCCGAGGGAGGAGAGCAGAG-AGGTGGAGAGGGAAGGTGATGGTTACTCG 419 Query 443 GTTTATTGCAAGAGAGGTAAAAGAGAAGCTATGGAGGATCGTTTCTCTGCCATCACTAAT 502 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| Sbjct 420 GTTTATTGCAAGAGAGGTAAAAGAGCAGCTATGGAGGATCGTTTCTCTGCCATCACAAAT 479 Query 503 CTTCAAGGAGATCCCAAACAGGCAATATTCGGAGTCTATGATGGTCACGGAGGACCAACA 562 |||||||||| |||||| |||||||||||||||||||||||||||| |||||||||| | Sbjct 480 ATTCAAGGAGAACCCAAAAAGGCAATATTCGGAGTCTATGATGGTCATGGAGGACCAATA 539 Query 563 GCGGCTGAGTTTGCGGCTAAGAACTTGTGTAGTAACATTCTTGGCGAGATAGTTGGTGGG 622 ||||||||||||||||||||||||||||||| ||||||||| || ||||||||||||||| Sbjct 540 GCGGCTGAGTTTGCGGCTAAGAACTTGTGTAATAACATTCTAGGAGAGATAGTTGGTGGG 599 Query 623 AGGAACGAGTCAAAGATTGAAGAAGCTGTAAAACGTGGTTATCTAGCGACTGATTCTGAG 682 |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| Sbjct 600 GGGAACGAGTCAAAGTTTGAAGAAGCAGTAAAACGTGGTTATCTAGCGACTGATTCTGAG 659 Query 683 TTTCTCAAGGaaaaaaaCGTTAAGGGCGGCTCGTGCTGTGTCACGGCTCTGATCAGCGAC 742 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 660 TTTCTCAAGGAAAAAGACGTTAAGGGCGGCTCGTGCTGTGTCACGGCTCTGATCAGCGAC 719 Query 743 GGAAATCTTGTGGTGGCCAATGCTGGTGACTGCCGTGCTGTTTTGAGCGTTGGAGGATTC 802 || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | Sbjct 720 GGGAATCTTGTGGTTGCCAATGCTGGTGACTGCCGTGCTGTTTTGAGCGTTGGAGGATAC 779 Query 803 GCGGAGGCCTTGACTTCTGACCACCGCCCTTCCAGAGATGATGAACGAAACAGAATTGAG 862 ||||| ||| |||||||||||||||| ||||| || || ||||||||||||||||||||| Sbjct 780 GCGGAAGCCCTGACTTCTGACCACCGACCTTCGAGGGACGATGAACGAAACAGAATTGAG 839 Query 863 AGCTCGGGCGGTTATGTGGATACATTCAATAGTGTTTGGAGAATTCAAGGATCATTAGCG 922 ||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||||| Sbjct 840 AGCTCGGGCGGTTATGTCGATACATTCAATAGTGTTTGGAGAATCCAAGGATCTTTAGCG 899 Query 923 GTATCTAGAGGAATAGGAGATGCTCATCTCAAACAATGGATAATATCTGAACCAGAGATA 982 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 900 GTATCTAGAGGAATAGGAGATGCTCATCTCAAACAATGGATAATATCTGAACCAGAGACA 959 Query 983 AATATTCTCCGAATCAATCCCCAACACGAGTTCTTGATCTTAGCATCAGATGGTCTATGG 1042 || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 960 AAGATTCTCCGAATCAATCCCCAACACGAGTTCTTGATCTTAGCATCAGACGGTCTATGG 1019 Query 1043 GACAAGGTTAGTAATCAGGAGGCAGTAGACATAGCTCGACCATTTTGCAAAGGGACCGAT 1102 ||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |||| Sbjct 1020 GACAAGGTTAGTAATCAGGAGGCAGTAGACATAGCTCGACCATTTTGCATAGGAATCGAT 1079 Query 1103 CAGAAACGGAAGCCATTGCTGGCTTGCAAGAAGCTCGTTGACCTCTCTGTATCACGAGGC 1162 || ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| Sbjct 1080 CAAAAACGGAAGCCATTGTTAGCTTGCAAGAAGCTCGTTGACCTCTCTGTATCACGAGGC 1139 Query 1163 TCCTTGGACGATATTAGTGTGATGTTGATTCAGTTGTGCCACCTCTTCTGACCATAGGAG 1222 ||||||||||||||||||||||||||| ||| |||||||| | ||||||||||||||||| Sbjct 1140 TCCTTGGACGATATTAGTGTGATGTTGGTTCCGTTGTGCCGCTTCTTCTGACCATAGGAG 1199 Query 1223 AAATGTAGAGACA-GA-AT-AA-C-A-ACGTTAGAGTCTGAAGTCATTCTTAATTTCTT 1275 ||||||| ||||| || | || | | |||||||||| ||||||||||||||||| ||| Sbjct 1200 AAATGTACAGACAAGATAACAATCTAGACGTTAGAGTTTGAAGTCATTCTTAATT-CTT 1257 > Ahg481911 jgi|Araly1|481911|fgenesh2_kg.4__971__AT2G30020.1 Length=1405 Score = 516 bits (279), Expect = 2e-145 Identities = 642/815 (79%), Gaps = 33/815 (4%) Strand=Plus/Plus Query 392 ACGCCGAGGGAGGAGAGTAGAGCA-GTGGAGAGGGAAGGTGATGGTTACTCTGTTTATTG 450 |||||||||||||||||||||| | || ||||| |||||||||||||||||||||||||| Sbjct 401 ACGCCGAGGGAGGAGAGTAGAG-AGGTTGAGAGAGAAGGTGATGGTTACTCTGTTTATTG 459 Query 451 CAAGAGAGGTAA-AAGAGAAGCTATGGAGGATCGTTTCTCTGCCATCACTAATCTTCAAG 509 |||||||| || |||||||||||||||||||||||||||||| ||||| |||||||| | Sbjct 460 TAAGAGAGG-AAGAAGAGAAGCTATGGAGGATCGTTTCTCTGCTATCACCAATCTTCATG 518 Query 510 GAGATCCCAAACAGGCAATATTCGGAGTCTATGATGGTCACGGAGGACC-AACAGCGGCT 568 |||||| |||||||| ||||| ||||||||||||||||| |||||| || ||||||| Sbjct 519 GAGATCGTAAACAGGCGATATTTGGAGTCTATGATGGTCATGGAGGAGTTAA-AGCGGCT 577 Query 569 GAGTTTGCGGCTAAGAACTT-GTGTA-GTAACATTCTTGGCGAGATAGTTGGTGGGAG-G 625 |||||||||||||||||||| | || | |||||| | | || ||||||||| || | Sbjct 578 GAGTTTGCGGCTAAGAACTTAGA-TAAG-AACATTGTAGAAGAAATAGTTGGTTTAAGAG 635 Query 626 AACGAGTCAAAGATTGAAGAAGCTGTAAAACGTGGTTATCTAG-CGACTGATTCTGAGTT 684 | |||||| || | | || || || ||||| ||||| || | | || || | | ||| Sbjct 636 A-CGAGTCTGAGGTAGCTGACGCGGTGAAACGCGGTTA-CTTGACAACAGACGCAGCGTT 693 Query 685 TCTCAAGGaaaaaaaCGTTAAGGGCGGCTCGTGCTGTGTCACGGCTCTGATCAGCGACGG 744 ||| ||||| ||| | || ||||| || |||||||||||||||||| || | ||||| || Sbjct 694 TCTTAAGGAGAAAGATGTCAAGGGTGGTTCGTGCTGTGTCACGGCTTTGGTTAGCGAAGG 753 Query 745 AAATCTTGTGGTGGCCAATGCTGGTGACTGCCGTGCTGTTTTGAGCGTTGGAGGAT-TCG 803 || ||||| ||| | ||||| |||||||| || |||||| |||| || ||||| | | | Sbjct 754 GAACCTTGTTGTGTCTAATGCCGGTGACTGTCGCGCTGTTATGAGTGTAGGAGG-TGTGG 812 Query 804 CGGAGGC-CT-TGACTTCTGACCACCGCCCTTCCAGAGATGATGAACG-AAACAGAATTG 860 | |||| || | ||||||| ||||| || || ||||| || ||| | ||| ||||||| Sbjct 813 CTAAGGCTCTAT--CTTCTGATCACCGTCCGTCTAGAGACGACGAAAGGAAA-AGAATTG 869 Query 861 AGAGCTCGGGCGGTTATGTGGATACATT-CAATAGTGTTTGGAGAATTCAAGGATCATTA 919 | | | |||| || ||||| ||||| || || ||||||||||||| || ||||| ||| Sbjct 870 AAACCACGGGTGGATATGTTGATACGTTTCACG-GTGTTTGGAGAATCCAGGGATCTTTA 928 Query 920 GCGGTATCTAGAGGAATAGGAGATGCTCATCTCAA-ACAATGGATAATATCTGAACCAGA 978 || || || ||||| || ||||||||||| || || | ||||| | ||| |||||||||| Sbjct 929 GCTGTGTCGAGAGGGATCGGAGATGCTCAACTTAAGA-AATGGGTTATAGCTGAACCAGA 987 Query 979 GATAAATATTCTCC-GAATCAATCCCCAACACGAGTTCTTGATCTTAGCATCAGATGGTC 1037 || ||| || ||| |||| | | | || |||||||||||||| || ||||||||| Sbjct 988 GACAAAGAT-CTCGAGAATTGAGCAGGACCATGAGTTCTTGATCTTGGCGTCAGATGGTT 1046 Query 1038 TATGGGACAAGGTTAGTAATCAGGAGGCAGTAGACATAGCTCGACCATTTTGCAAAGGGA 1097 ||||||| ||||| ||||| || || ||||||||||| ||||| || || ||| ||| | Sbjct 1047 TATGGGATAAGGTGAGTAACCAAGAAGCAGTAGACATTGCTCGTCCCTTATGCTTAGGAA 1106 Query 1098 CCGATCAGAAACGGAAGCCATTGCTGGCTTGCAAGAAGCTCGTTGACCTCTCTG-TATCA 1156 |||| || | | | | || | || | |||||||| || || ||||| | | ||| Sbjct 1107 CCGAGAAGCCATTGTTGTTA--GCAGCCT-GTAAGAAGCTTGTCGATCTCTCGGCT-TCA 1162 Query 1157 CGAGGCTCCTTGGACGATATTAGTGTGATGTTGAT 1191 |||||||| | ||| ||||| |||||||||||||| Sbjct 1163 CGAGGCTCGTCGGATGATATCAGTGTGATGTTGAT 1197 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 54621411330 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5