BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G07170.1
Length=595
Score E
Sequences producing significant alignments: (Bits) Value
Ahg334015 jgi|Araly1|334015|fgenesh1_pg.C_scaffold_1000580 492 1e-138
> Ahg334015 jgi|Araly1|334015|fgenesh1_pg.C_scaffold_1000580
Length=465
Score = 492 bits (266), Expect = 1e-138
Identities = 290/302 (96%), Gaps = 0/302 (0%)
Strand=Plus/Plus
Query 135 ATGGCCAAGCATCATCCTGATTTGATCATGTGCCGGAAACAACCTGGCATTGCTATTGGG 194
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1 ATGGCCAAGCATCATCCTGATTTGATCATGTGCCGCAAACAACCTGGCATTGCTATTGGG 60
Query 195 CGACTGTGCGAGAAGTGTGATGGAAAATGCGTCATATGTGATTCCTATGTCCGCCCGTGT 254
|| | |||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CGGTTATGCGAGAAATGCGATGGAAAATGCGTCATATGTGATTCCTATGTCCGCCCGTGT 120
Query 255 ACTCTGGTTAGGATTTGCGATGAATGCAACTATGGTTCGTTCCAAGGGCGGTGTGTCATA 314
||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 121 ACTCTGGTTCGGATTTGCGATGAATGCAACTATGGTTCGTTCCAAGGACGGTGTGTCATA 180
Query 315 TGCGGAGGAGTTGGAATCTCGGATGCTTACTACTGCAAAGAGTGTACACAACAGGAGAAA 374
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 181 TGCGGAGGAGTTGGAATCTCAGATGCTTACTACTGCAAAGAGTGTACACAACAGGAGAAA 240
Query 375 GATAGAGATGGTTGTCCTAAGATAGTCAATCTTGGCAGTGCCAAAACTGATCTGTTCTAT 434
||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 241 GATAGAGATGGCTGTCCTAAGATTGTCAATCTTGGCAGTGCGAAAACTGATCTGTTCTAT 300
Query 435 GA 436
||
Sbjct 301 GA 302
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21786841319
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5