BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G07180.1
Length=1788
Score E
Sequences producing significant alignments: (Bits) Value
Ahg919443 jgi|Araly1|919443|scaffold_100724.1 2492 0.0
Ahg481908 jgi|Araly1|481908|fgenesh2_kg.4__968__AT2G29990.1 1280 0.0
> Ahg919443 jgi|Araly1|919443|scaffold_100724.1
Length=1571
Score = 2492 bits (1349), Expect = 0.0
Identities = 1496/1567 (95%), Gaps = 10/1567 (1%)
Strand=Plus/Plus
Query 85 CTAAAG-AATCATGT-TGTGGATCAAAAACCTAGCAAGAATCTCGCAGACCACTTCTTCG 142
|||| | |||||||| | |||||||||||||| | |||||||||||||||||||||||||
Sbjct 11 CTAACGAAATCATGTCT-TGGATCAAAAACCTCGTAAGAATCTCGCAGACCACTTCTTCG 69
Query 143 TCTGTCGGAAACGTGTTCAGAAACCCCGAATCCTACACTCTCTCGTCCCGTTTCTGCACC 202
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 70 TCGGTCGGAAACGTGTTCAGAAACCCCGAATCCTACACTCTCTCGTCCCGTTTCTGCACC 129
Query 203 GCTCTGCAAAAGCAACAAGTA-ACCGACACGGTTCAAGCAAAGGAGGATGTAGTTAATGC 261
||||| |||||||||| || | ||||| ||||||||||| || |||||||||||||||
Sbjct 130 GCTCTCCAAAAGCAACCAG-ACACCGAGACGGTTCAAGC-AA--AGGATGTAGTTAATGG 185
Query 262 GTTGGAGCCACAACGTTACGACGGTTTGGCTCCGACGAAAGAGGGAGAGAAGCCGAGAGT 321
||||||| |||| ||||||||||||||||||||||| ||||| || ||||||||||| ||
Sbjct 186 GTTGGAGTCACAGCGTTACGACGGTTTGGCTCCGACTAAAGAAGGTGAGAAGCCGAGGGT 245
Query 322 TTTGGTTCTCGGGTCGGGTTGGGCGGGTTGTCGG-GTATTAAAAGGGATCGATACTAGTA 380
| |||||||||||||||||||||||||||||||| || | |||||||||||||| ||||
Sbjct 246 TCTGGTTCTCGGGTCGGGTTGGGCGGGTTGTCGGCTTA-TGAAAGGGATCGATACGAGTA 304
Query 381 TTTACGACGTCGTTTGTGTCTCTCCTAGGAACCACATGGTCTTCACTCCTCTCTTGGCTT 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 305 TTTACGACGTCGTTTGTGTCTCTCCTAGGAACCACATGGTCTTCACTCCTCTCTTGGCTT 364
Query 441 CTACTTGCGTTGGTACGCTTGAGTTTAGGTCTGTTGCTGAACCAATCTCTCGTATCCAAC 500
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 365 CTACTTGCGTTGGTACCCTTGAGTTTAGGTCCGTTGCTGAACCAATCTCTCGTATCCAAC 424
Query 501 CGGCGATTTCACGAGAACCCGGTTCTTATTACTTCCTTGCTAATTGCTCCAAACTTGATG 560
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 425 CGGCGATTTCACGAGAACCCGGTTCTTATTACTTCCTCGCTAATTGCTCTAAACTTGATG 484
Query 561 CTGATAATCATGAGGTGCATTGTGAGACTGTAACTGAGGGGTCTAGCACATTGAAGCCAT 620
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 485 CTGATAATCATGAGGTGCATTGTGAGACTGTAACTGAAGGCTCTAGCACATTGAAGCCAT 544
Query 621 GGAAGTTCAAGATAGCTTATGACAAACTGGTACTAGCTTGTGGTGCAGAAGCATCCACAT 680
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 545 GGAAGTTCAAGATAGCTTACGACAAACTGGTACTAGCTTGTGGTGCAGAAGCATCCACAT 604
Query 681 TTGGAATTAATGGCGTCTTAGAAAACGCCATTTTCCTCCGTGAGGTTCACCACGCTCAGG 740
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 605 TTGGAATTAATGGCGTCTTAGAAAACGCCATCTTCCTCCGTGAGGTTCACCACGCTCAAG 664
Query 741 AGATCCGTAGGAAGCTTCTTCTTAACCTCATGCTCTCTGAAGTTCCAGGCATAGGTGAAG 800
| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 665 AAATCCGTAGGAAGCTTCTTCTTAACCTCATGCTCTCTGAAGTTCCAGGCATATCCGAAG 724
Query 801 ATGAGAAGAAGAGGCTGTTGCATTGCGTTGTGGTTGGAGGTGGGCCAACTGGTGTTGAGT 860
|||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 725 ATGAGAAGAAGAGGTTGTTGCATTGTGTTGTGGTTGGAGGTGGGCCAACTGGTGTTGAGT 784
Query 861 TTAGTGGTGAATTGAGTGATTTCATCATGAAAGATGTTCGTCAGAGATATTCTCATGTGA 920
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 785 TTAGTGGTGAATTGAGTGATTTCATCATGAAAGATGTTCGTCAGAGATATTCTCATGTGA 844
Query 921 AAGACGACATTCGTGTTACTCTGATTGAGGCAAGGGATATACTTTCTTCTTTTGACGATC 980
|||| |||||||| |||||| |||||||||||||||||||||||||||| || || ||||
Sbjct 845 AAGATGACATTCGCGTTACTTTGATTGAGGCAAGGGATATACTTTCTTCGTTCGATGATC 904
Query 981 GGCTAAGGCACTATGCAATCAAGCAGTTAAACAAGTCTGGAGTGAAGCTTGTGCGTGGGA 1040
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 905 GGCTAAGGCACTATGCAATCAAGCAGTTAAACAAGTCTGGAGTGAAGCTTGTGCGAGGGA 964
Query 1041 TTGTGAAAGAAGTGAAGCCTCAGAAGCTAATCCTTGATGATGGCACTGAAGTTCCTTACG 1100
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 965 TTGTGAAAGAAGTGAAGCCTCAGAAGCTAATCCTTGATGATGGTACTGAAGTTCCTTACG 1024
Query 1101 GTCCCTTAGTCTGGTCAACTGGTGTTGGTCCATCTTCATTTGTGAGGTCTCTTGATTTTC 1160
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1025 GTCTCTTAGTCTGGTCAACTGGTGTTGGTCCATCTTCATTTGTGAGGTCTCTTGATTTTC 1084
Query 1161 CTAAAGATCCAGGTGGAAGGATTGGTATTGATGAGTGGATGCGTGTACCTTCTGTACAAG 1220
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1085 CAAAAGATCCAGGTGGAAGGATTGGTATTGATGAGTGGATGCGTGTACCTTCTGTACAAG 1144
Query 1221 ACGTGTTTGCAATTGGTGACTGTAGCGGTTATCTCGAGAGCACAGGGAAATCAACACTTC 1280
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1145 ACGTGTTTGCAATTGGTGACTGTAGCGGATATCTCGAGAGCACAGGGAAATCAACACTTC 1204
Query 1281 CTGCACTTGCACAGGTGGCTGAGAGAGAAGGCAAATACTTGGCGAATCTGTTTAACGTGA 1340
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1205 CTGCTCTTGCACAGGTGGCTGAGAGAGAAGGCAAATACTTGGCAAATCTGTTTAACGTGA 1264
Query 1341 TGGGAAAAGCTGGAGGAGGACGGGCCAATAGCGCAAAGGAAATGGAGCTTGGGGAACCAT 1400
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 1265 TGGGAAAAGCTGGAGGAGGACGAGCCAATAGCGCAAAGGAAATGGAGCTTGGAGAACCAT 1324
Query 1401 TTGTGTATAAACATCTCGGAAGTATGGCTACTATTGGGAGATACAAAGCTCTCGTTGATC 1460
|||||||||||||| | |||||||||||||||||||| |||||||||||||| |||||||
Sbjct 1325 TTGTGTATAAACATTTGGGAAGTATGGCTACTATTGGAAGATACAAAGCTCTTGTTGATC 1384
Query 1461 TCCGTGAGAGCAAGGAAGGGAAAGGAATATCAATGGCAGGTTTTCTGAGCTGGTTCATAT 1520
|||||||||| |||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct 1385 TCCGTGAGAGTAAGGAAGGAAAAGGAATATCAATGGCAGGTTTTGTGAGCTGGTTCATAT 1444
Query 1521 GGAGGTCTGCTTATCTGACTCGAGTCGTCAGCTGGAGAAACCGTTTCTACGTTGCTATCA 1580
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1445 GGAGGTCTGCTTATCTGACTCGAGTCGTCAGCTGGAGAAACCGTTTCTATGTTGCTATCA 1504
Query 1581 ATTGGCTCACTACCTTTGTCTTTGGTCGGGACATTAGCCGAATCTGATCCATATCCCCTC 1640
||||||||||||| |||||||||||||| |||||||||||||||||||||| ||| | ||
Sbjct 1505 ATTGGCTCACTACTTTTGTCTTTGGTCGTGACATTAGCCGAATCTGATCCAAATCTCTTC 1564
Query 1641 CACTTCG 1647
|||||||
Sbjct 1565 CACTTCG 1571
> Ahg481908 jgi|Araly1|481908|fgenesh2_kg.4__968__AT2G29990.1
Length=1515
Score = 1280 bits (693), Expect = 0.0
Identities = 1144/1361 (84%), Gaps = 34/1361 (2%)
Strand=Plus/Plus
Query 284 GGTTTGGCTCCGACGAAAGAGGGAGAGAAGCCGAGAGTTTTGGTTCTCGGGTCGGGTTGG 343
||||| || ||||||| ||| |||||||| |||||||| ||||||||||||||||||||
Sbjct 172 GGTTTAGCACCGACGAGAGAAGGAGAGAAACCGAGAGTGGTGGTTCTCGGGTCGGGTTGG 231
Query 344 GCGGGTTGTCGGGT-ATTAAAAGGGATCGATACTAGTATTTACGACGTCGTTTGTGTCTC 402
||||||||||| | | | |||||||||||||| | | | ||||||||||||||||| ||
Sbjct 232 GCGGGTTGTCGATTGA-TGAAAGGGATCGATACGAATCTCTACGACGTCGTTTGTGTTTC 290
Query 403 TCCTAGGAACCACATGGTCTTCACTCCTC-TCTTGGCTTCTACTTGCGTTGGTACGCTTG 461
||| || ||||| ||||| |||||||||| |||| ||||||||||| |||||||| || |
Sbjct 291 TCCGAGAAACCATATGGTTTTCACTCCTCTTCTT-GCTTCTACTTGTGTTGGTACTCTCG 349
Query 462 AGTTTAGGTCTGTTGCTGAACCAATCTCTCGTATCCAACCGGCGATTTC-ACGAGAACCC 520
| ||||||||||| ||||| || ||||| || || ||||| |||||||| | |||| ||
Sbjct 350 AATTTAGGTCTGTCGCTGAGCCTATCTCACGGATTCAACCTGCGATTTCTA-GAGAGCCT 408
Query 521 GGTTCTTATTACTTCCTTGCTAATTGCTC-CAAACTTGATGCTGATAATCATGAGGTGCA 579
|||||||||| |||||| ||||||||||| | ||||||||||| ||||||||| ||
Sbjct 409 GGTTCTTATTTCTTCCTCGCTAATTGCTCTC-GTCTTGATGCTGAGGCTCATGAGGTTCA 467
Query 580 TTGTGAGACTGTAACTGAGGGGTCT-AGCACATTGAAGCCATGGAAGTTCAAGATAGCTT 638
||||||||| ||||||| || | | | ||||| |||||||||||||||||||| ||||
Sbjct 468 CTGTGAGACTTTAACTGATGGCT-TGAATACATTAAAGCCATGGAAGTTCAAGATTGCTT 526
Query 639 ATGACAAACTGGTACTAGCTTGTGGTGCAGAAGCATCCACATTTGGAATTAATGGCGTCT 698
|||| || || || ||||| | |||||||| || || || |||||||| |||| |||
Sbjct 527 ATGATAAGCTTGTGGTAGCTAGCGGTGCAGAGGCGTCAACGTTTGGAATCCATGGTGTCA 586
Query 699 TAGAAAACGCCATTTTCCTCCGTGAGGTTCACCACGCTCAGGAGATCCGTAGGAAGCTTC 758
| |||||||| || ||||| ||||| |||||||| ||||||||||| ||||||||||| |
Sbjct 587 TGGAAAACGCGATCTTCCTTCGTGAAGTTCACCATGCTCAGGAGATTCGTAGGAAGCTAC 646
Query 759 TTCTT-AACCTCATGCTCTCTGA-AGTTCCAGGCATAGGT-G-AAGATGAGAAGAAGAGG 814
|| || || || ||||||||||| | ||| |||||| | | |||| ||||| ||||||
Sbjct 647 TT-TTAAATCTGATGCTCTCTGATA-CTCCTGGCATA--TCGAAAGAGGAGAAAAAGAGG 702
Query 815 CTGTTGCATTGCGTTGTGGTTGGAGGTGGGCCAACTGGTGTTGAGTTTAGTGGTGAATTG 874
||||| ||||||||||||||||| ||||| |||||||||||||||||||| |||||| ||
Sbjct 703 CTGTTACATTGCGTTGTGGTTGGTGGTGGACCAACTGGTGTTGAGTTTAGCGGTGAACTG 762
Query 875 AGTGA-TTTCATCATGAAAGATGTTCGTCAGA-GATATTCTCATGTGAAAGACGACATTC 932
||||| ||| |||||||||||||||||||| | ||||||| |||||||| ||||||||||
Sbjct 763 AGTGACTTT-ATCATGAAAGATGTTCGTCA-ACGATATTCCCATGTGAAGGACGACATTC 820
Query 933 GTGTTACTCTGATTGAGGCAAGGGATATACTTTCTTCTTTTGACGATCGGCTAAGGCACT 992
||||||| |||| ||||| |||||||||||||| ||||| || ||||| || || | |
Sbjct 821 ATGTTACTTTGATAGAGGCCAGGGATATACTTTCATCTTTCGATGATCGTCTCAGACGTT 880
Query 993 ATGCAATCAAGCAGTTAAACAAGTCTGGAGTGAAGCTTGTGCGTGGGATTGTGAAAGAAG 1052
|||| || |||||||| ||||||||||||||| | |||||||||| ||||||||||| |
Sbjct 881 ATGCTATAAAGCAGTTGAACAAGTCTGGAGTGCGGTTTGTGCGTGGCATTGTGAAAGATG 940
Query 1053 TGAAGCCTCAGAAGCTAATCCTTGATGATGGCACTGAAGTTCCTTACGGTCCCTTAGTCT 1112
|| || ||||||||||||| ||||| |||||||| |||||||| ||||| | |||||| |
Sbjct 941 TGCAGTCTCAGAAGCTAATACTTGACGATGGCACAGAAGTTCCCTACGGACTCTTAGTGT 1000
Query 1113 GGTCAACTGGTGTTGGTCCATCTTCATTT-GTGAGGTCTCTTGATTTTCCTAAAGATCC- 1170
|||| |||||||||||||| || || ||| || |||||||||| | |||| ||||||||
Sbjct 1001 GGTCCACTGGTGTTGGTCCTTCCTC-TTTCGTTAGGTCTCTTGGTCTTCCAAAAGATCCT 1059
Query 1171 AGGTGGAAGGATTGGTATTGATGAGTGGATGCGTGTACCTTCTGTACAAGACGTGTTTGC 1230
| |||||||||||| ||||| || |||||||||||||||||||||||||||||||||||
Sbjct 1060 A-CTGGAAGGATTGGCATTGACGAATGGATGCGTGTACCTTCTGTACAAGACGTGTTTGC 1118
Query 1231 AATTGGTGACTGTAGCGGTTATCTCGAGAGCACAGGGAAATCAACACTTCCTGCACTTGC 1290
||||||||||| ||||| ||||| |||| ||| || ||| |||| |||||||| || ||
Sbjct 1119 CATTGGTGACTGCAGCGGATATCTGGAGACCACCGGAAAACCAACCCTTCCTGCTCTCGC 1178
Query 1291 ACAGGTGGCTGAGAGAGAAGGCAAATACTTGGCGAATCTGTTTAACGTGAT-GGGAAAAG 1349
||||| |||||||||||||||||||||||||||||||| | || | ||| |||||| |
Sbjct 1179 TCAGGTAGCTGAGAGAGAAGGCAAATACTTGGCGAATCTACTAAATGAGATTGGGAAA-G 1237
Query 1350 CTGGA-GGAGGACGGGCCAATAGCGCAAAGGAAATGGAGCTTGGGGAACCATTTGTGTAT 1408
| | |||||||||||||| ||||||||||| || || ||||| | ||||||||||||
Sbjct 1238 CCA-ATGGAGGACGGGCCAACAGCGCAAAGGAGATAGAACTTGGAGCTCCATTTGTGTAT 1296
Query 1409 AAACATCTCGGAAGTATGGCTACTATTGGGAGATACAAAGCTCTCGTTGATCTCCGTGAG 1468
|| || || ||||| |||||||| || || ||||||||||| || || || || || |||
Sbjct 1297 AAGCACCTTGGAAGCATGGCTACGATCGGTAGATACAAAGCACTAGTCGACCTTCGCGAG 1356
Query 1469 AGCAAGGAAGGGAAAGGAATATCAATGGCAGGTTTTC-TGAGCTGGTTCATATGGAGGTC 1527
|||||||| | ||||| ||||||||| | ||||| | ||||||||||||||||||||||
Sbjct 1357 AGCAAGGACGCAAAAGGGATATCAATGACTGGTTT-CGTGAGCTGGTTCATATGGAGGTC 1415
Query 1528 TGCTTATCTGACTCGAGTCGTCAGCTGGAGAAACCGTTTCTACGTTGCTATCAATTGGCT 1587
|| ||||||||||||||||| |||||||||||||| ||||| || || ||||| ||| |
Sbjct 1416 GGCGTATCTGACTCGAGTCGTAAGCTGGAGAAACCGATTCTATGTCGCCATCAACTGGTT 1475
Query 1588 CACTACCTTT-GTCTTTGGTCGGGACATTAGCCGAATCTGA 1627
||| || ||| ||||| ||||| ||||||||||| ||||||
Sbjct 1476 CACCAC-TTTCGTCTTCGGTCGTGACATTAGCCGTATCTGA 1515
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67115011690
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5